Merged pull requests:
- Now set up with bioconda #53 (ssjunnebo)
- Add PkgVersion #52 (ssjunnebo)
- Auto generate META.json using [MetaJSON]. #51 (manwar)
- Updated readme #50 (ssjunnebo)
- remove version nr, autoversion instead #49 (ssjunnebo)
v0.0.1 (2018-01-25)
Merged pull requests:
- Add version number #48 (ssjunnebo)
- infgen #47 (andrewjpage)
- change from 108 to 118 #46 (andrewjpage)
- fix hmmer url #45 (vaofford)
- output directory parameter #44 (andrewjpage)
- Removed cc21 #43 (aslett1)
- Add TravisCI support #42 (bewt85)
- typo #41 (andrewjpage)
- keep original order of contigs and sequence names #40 (andrewjpage)
- add paper to usage #39 (andrewjpage)
- expose the translation code option #38 (andrewjpage)
- Added AUTHORS file #37 (aslett1)
- Added README #36 (aslett1)
- Slight change to how products are searched #35 (carlacummins)
- specify version for Bio::SearchIO #34 (andrewjpage)
- output base name for genes #33 (andrewjpage)
- allow for multiple processors to be used in annotate bacteria #32 (andrewjpage)
- update usage text for annotate_bacteria #31 (andrewjpage)
- set default dbdir #30 (andrewjpage)
- Move IPRscan wrapper to separate repo #29 (andrewjpage)
- initial eukaryote annotation functionality #28 (andrewjpage)
- renamed LICENSE #27 (CraigPorter)
- GPL #26 (andrewjpage)
- Allow for kingdom to be passed in #25 (andrewjpage)
- sort the genes by number found #24 (andrewjpage)
- make script executable #23 (andrewjpage)
- script to output a spreadsheet of gene occurances #22 (andrewjpage)
- add script to extract genes from gffs #21 (andrewjpage)
- number of features in cmscan obj #20 (andrewjpage)
- calc files with and without hits #19 (andrewjpage)
- use cmobj #18 (andrewjpage)
- move cmscan to class and test #17 (andrewjpage)
- allow qualifiers to be chosen #16 (andrewjpage)
- fasta file of extracted genes #15 (andrewjpage)
- take sequence id from infernal results #14 (andrewjpage)
- fix infernal coord system #13 (andrewjpage)
- exclude aragorn end tag #12 (andrewjpage)
- enable rfam by default #11 (andrewjpage)
- limit to 1 cpu for pipeline #10 (andrewjpage)
- dont over write with blank gene name #9 (andrewjpage)
- dont overwrite gene name if its set #8 (andrewjpage)
- allow genus to be passed into cmd #7 (andrewjpage)
- Create seq files once #6 (andrewjpage)
- temp directory type #5 (andrewjpage)
- uniq temp directory #4 (andrewjpage)
- genus #3 (andrewjpage)
- use time as object not string #2 (andrewjpage)
- Basic wrappers #1 (andrewjpage)