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Could anybody enlighten me as to how to figure out which genome is which in the pangenome matrix plot after using roary_plots?
I have built a tree from the core_gene_alignment.aln file using fasttree, which was then used as the input for roary_plots analysis. However, the phylogenetic tree in the pangenome matrix does not look anything like the tree used as the input (?)!
Many thanks,
Claudia
The text was updated successfully, but these errors were encountered:
Could anybody enlighten me as to how to figure out which genome is which in the pangenome matrix plot after using roary_plots?
I have built a tree from the core_gene_alignment.aln file using fasttree, which was then used as the input for roary_plots analysis. However, the phylogenetic tree in the pangenome matrix does not look anything like the tree used as the input (?)!
Many thanks,
Claudia
The text was updated successfully, but these errors were encountered: