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1. gb2fasta gb2fasta Public

   Perl script to convert GenBank records to FASTA format

   Perl 4

2. mask_fastq mask_fastq Public

   Perl/Python scripts that masks bases as "N"s given a PHRED quality score threshold

   Perl

3. rBt rBt Public

   Handy functions for dealing with BEAST trees in R

   R 4 3

4. vcf2fasta vcf2fasta Public

   Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file

   Python 46 7

5. ConcatFasta ConcatFasta Public

   Concatenates FASTA files, imputes dummy sequences, and prints a partition table

   Python 4 1

6. PolyFastA PolyFastA Public

   Fast diversity estimator for FASTA sequences in Python

   Python 3