DESCRIPTION

Package: SeuratObject
Type: Package
Title: Data Structures for Single Cell Data
Version: 5.0.99.9001
Authors@R: c(
  person(given = 'Paul', family = 'Hoffman', email = 'hoff0792@alumni.umn.edu', role = 'aut', comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Rahul', family = 'Satija', email = 'seurat@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0001-9448-8833')),
  person(given = 'David', family = 'Collins', email = 'dcollins@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9243-7821')),
  person(given = "Yuhan", family = "Hao", email = 'yhao@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-1810-0822')),
  person(given = "Austin", family = "Hartman", email = 'ahartman@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-7278-1852')),
  person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-8628-5056')),
  person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
  person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897')),
  person(given = "Madeline", family = "Kowalski", email = "mkowalski@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-5655-7620")),
  person(given = "Saket", family = "Choudhary", email = "schoudhary@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-5202-7633")),
  person(given = "Skylar", family = "Li", email = "sli@nygenome.org", role = "ctb"),
  person(given = "Longda", family = "Jiang", email = "ljiang@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0003-4964-6497")),
  person(given = 'Jeff', family = 'Farrell', email = 'jfarrell@g.harvard.edu', role = 'ctb'),
  person(given = 'Shiwei', family = 'Zheng', email = 'szheng@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6682-6743')),
  person(given = 'Christoph', family = 'Hafemeister', email = 'chafemeister@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6365-8254')),
  person(given = 'Patrick', family = 'Roelli', email = 'proelli@nygenome.org', role = 'ctb')
  )
Description: Defines S4 classes for single-cell genomic data and associated
  information, such as dimensionality reduction embeddings, nearest-neighbor
  graphs, and spatially-resolved coordinates. Provides data access methods and
  R-native hooks to ensure the Seurat object is familiar to other R users. See
  Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
  Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
  and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
  Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
  Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
  more details.
URL: https://satijalab.github.io/seurat-object/,
    https://github.com/satijalab/seurat-object
BugReports: https://github.com/satijalab/seurat-object/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Additional_repositories:
    https://bnprks.r-universe.dev
Depends:
    R (>= 4.1.0),
    sp (>= 1.5.0)
Imports:
    future,
    future.apply,
    grDevices,
    grid,
    Matrix (>= 1.6.4),
    methods,
    progressr,
    Rcpp (>= 1.0.5),
    rlang (>= 0.4.7),
    stats,
    tools,
    utils,
    spam,
    lifecycle,
    generics
Suggests:
    DelayedArray,
    fs (>= 1.5.2),
    ggplot2,
    HDF5Array,
    rmarkdown,
    testthat,
    BPCells,
    sf (>= 1.0.0)
Collate:
    'RcppExports.R'
    'zzz.R'
    'generics.R'
    'keymixin.R'
    'graph.R'
    'default.R'
    'assay.R'
    'logmap.R'
    'layers.R'
    'assay5.R'
    'centroids.R'
    'command.R'
    'compliance.R'
    'data.R'
    'jackstraw.R'
    'dimreduc.R'
    'segmentation.R'
    'molecules.R'
    'spatial.R'
    'fov.R'
    'neighbor.R'
    'seurat.R'
    'sparse.R'
    'utils.R'
LinkingTo: Rcpp, RcppEigen
Enhances:
    Seurat
Config/Needs/website:
    pkgdown