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make warning #27

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xieduo7 opened this issue Aug 22, 2022 · 0 comments
Open

make warning #27

xieduo7 opened this issue Aug 22, 2022 · 0 comments

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@xieduo7
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xieduo7 commented Aug 22, 2022

Hi @shiquan ,

I came across a warning when I make this software:

$ make
make: Warning: File 'Makefile' has modification time 585 s in the future
rm -fr gmon.out *.o a.out *.exe *.dSYM  bamdst *~ *.a target.dep *.plot *.report *.tsv.gz uncover.bed
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. bgzf.c -o bgzf.o
bgzf.c: In function ‘bgzf_close’:
bgzf.c:435:11: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
  int ret, count, block_length;
           ^
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. kstring.c -o kstring.o
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. samlib/bam_aux.c -o bam_aux.o
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. samlib/bam.c -o bam.o
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. samlib/bam_import.c -o bam_import.o
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. samlib/bam_index.c -o bam_index.o
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. samlib/sam_header.c -o sam_header.o
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. bedutil.c -o bedutil.o
bedutil.c: In function ‘regcore_uniq’:
bedutil.c:256:12: warning: variable ‘lastbeg’ set but not used [-Wunused-but-set-variable]
   uint32_t lastbeg = 0;
            ^
bedutil.c: At top level:
bedutil.c:180:13: warning: ‘reg_destroy’ defined but not used [-Wunused-function]
 static void reg_destroy(bedreglist_t *reg, bedvoid_destroy func)
             ^
bedutil.c:589:13: warning: ‘bed_view’ defined but not used [-Wunused-function]
 static void bed_view(regHash_t *reghash, char *reg)
             ^
gcc -c -g -Wall -O2  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DBGZF_CACHE -Isamlib/ -I. commons.c -o commons.o
commons.c:3:13: warning: ‘stderr_print’ defined but not used [-Wunused-function]
 static void stderr_print(char *format, ...)
             ^
/data/xieduo/WES_pipe/pipeline/bin/Miniconda3/envs/gatk_4.2.6.1/bin/x86_64-conda-linux-gnu-ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o bam_index.o sam_header.o bedutil.o commons.o
gcc -g -Wall -O2  -o bamdst  -L/home/xieduo/lib/curl-7.28.0/lib -L/home/xieduo/lib/pcre2-10.39/lib -L/home/xieduo/lib/xz-5.2.5/lib -L/home/xieduo/lib/bzip2-1.0.6/lib -L/home/xieduo/lib/zlib-1.2.11/lib -L/home/xieduo/lib/libpng-1.6.37/lib -L/home/xieduo/lib/openssl-1.1.1n/lib  bamdst.c -L.  -Isamlib/ -I. -lm -lbam -lz
make: warning:  Clock skew detected.  Your build may be incomplete.

How to solve this issue? Thank you.

Best,
Duo

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