NAMESPACE

# Generated by roxygen2: do not edit by hand

export(GeomPointFixed)
export(GeomSegmentFixed)
export(GeomTextFixed)
export(HistoImage)
export(HistoImaging)
export(HistologyImage)
export(HistologyImaging)
export(ImageAnnotation)
export(MERFISH)
export(MolecularAssay)
export(SPATA2)
export(SlideSeqV1)
export(SpatialAnnotationScreening)
export(SpatialData)
export(SpatialGradientScreening)
export(SpatialMethod)
export(SpatialTrajectory)
export(SpatialTrajectoryScreening)
export(Trajectory)
export(VisiumHD)
export(VisiumLarge)
export(VisiumSmall)
export(Xenium)
export(activateAssay)
export(activateImage)
export(activateImageInt)
export(activateMatrix)
export(activeAssay)
export(activeImage)
export(activeMatrix)
export(addExpressionMatrix)
export(addFeatures)
export(addGeneSet)
export(addImageAnnotation)
export(addInnerBorder)
export(addMetaDataMol)
export(addMetaDataObs)
export(addMetaboliteSet)
export(addMoleculeCoordinates)
export(addProcessedMatrix)
export(addProteinSet)
export(addSignature)
export(addSpatialAnnotation)
export(addSpatialTrajectory)
export(add_dbscan_variable)
export(add_edge_variable)
export(add_grid_variable)
export(add_models)
export(add_models_to_shifted_projection_df)
export(add_tissue_section_variable)
export(adjustDefaultInstructions)
export(alignImage)
export(alignImageInteractive)
export(allColorpalettes)
export(allColorspectra)
export(all_color_palettes)
export(all_color_spectra)
export(are_all_area_or_dist)
export(are_all_dist)
export(asGiotto)
export(asMolecularAssay)
export(asSPATA2)
export(asSeurat)
export(asSingleCellExperiment)
export(asSummarizedExperiment)
export(as_SPATA2_dist)
export(as_centimeter)
export(as_centimeter2)
export(as_decimeter)
export(as_decimeter2)
export(as_meter)
export(as_meter2)
export(as_micrometer)
export(as_micrometer2)
export(as_millimeter)
export(as_millimeter2)
export(as_nanometer)
export(as_nanometer2)
export(as_pixel)
export(as_unit)
export(barcodesToSpatialAnnotation)
export(bin_projection_df)
export(buffer_area)
export(centerSpatialAnnotation)
export(check_image_annotation_ids)
export(check_image_annotation_tags)
export(check_method)
export(check_object)
export(check_sas_input)
export(check_to)
export(check_variables)
export(close_area_df)
export(color_vector)
export(computeCnvByChrArm)
export(computeCountPercentage)
export(computeMetaFeatures)
export(computePixelScaleFactor)
export(compute_angle_between_two_points)
export(compute_correction_factor_sas)
export(compute_correction_factor_sts)
export(compute_img_scale_fct)
export(containsAssay)
export(containsCCD)
export(containsCNV)
export(containsCells)
export(containsHistoImages)
export(containsHistologyImaging)
export(containsImage)
export(containsInnerBorders)
export(containsMethod)
export(containsModality)
export(containsMoleculeCoordinates)
export(containsPixelContent)
export(containsScaleFactor)
export(containsSpatialAnnotations)
export(containsSpatialData)
export(containsSpatialOutliers)
export(containsSpots)
export(containsTissueOutline)
export(createGroupAnnotations)
export(createHistoImage)
export(createImageAnnotations)
export(createMolecularAssay)
export(createNumericAnnotations)
export(createSegmentation)
export(createSpatialData)
export(createSpatialDataMERFISH)
export(createSpatialDataSlideSeqV1)
export(createSpatialDataVisium)
export(createSpatialDataVisiumHD)
export(createSpatialDataXenium)
export(createSpatialMethod)
export(createSpatialSegmentation)
export(createSpatialTrajectories)
export(createTrajectories)
export(createTrajectoryManually)
export(create_model_df)
export(cropSpataObject)
export(currentSpata2Version)
export(current_spata2_version)
export(data_counts)
export(default_image_transformations)
export(default_instructions)
export(depr_info)
export(deprecatedInfo)
export(dim_red)
export(discardExpressionMatrix)
export(dissolveGroups)
export(distToEdge)
export(downloadSpataObject)
export(downloadSpataObjects)
export(exchangeImage)
export(expandSpatialAnnotation)
export(extract_unit)
export(extract_value)
export(filterDeaDf)
export(filterSpataObject)
export(find_elbow_point)
export(flipAll)
export(flipCoordinates)
export(flipCoords)
export(flipCoordsDf)
export(flipImage)
export(flipSpatialAnnotations)
export(flipSpatialTrajectories)
export(flip_coords_df)
export(geom_point_fixed)
export(geom_segment_fixed)
export(geom_text_fixed)
export(getActive)
export(getActiveExpressionMatrixName)
export(getActiveMatrixName)
export(getAssay)
export(getAssayModalities)
export(getAssayNames)
export(getAutoencoderAssessment)
export(getAutoencoderSetUp)
export(getBackgroundColor)
export(getBarcodeSpotDistance)
export(getBarcodes)
export(getBarcodesInPolygon)
export(getBarcodesInPolygonList)
export(getCCD)
export(getCaptureArea)
export(getChrRegionsDf)
export(getCnvFeatureNames)
export(getCnvGenesDf)
export(getCnvResults)
export(getCoordsCenter)
export(getCoordsDf)
export(getCoordsDfSA)
export(getCoordsDfST)
export(getCoordsMtr)
export(getCoordsRange)
export(getCountMatrix)
export(getDeaGenes)
export(getDeaLfcName)
export(getDeaOverview)
export(getDeaResultsDf)
export(getDefault)
export(getDefaultGrouping)
export(getDefaultInstructions)
export(getDefaultUnit)
export(getExpressionMatrix)
export(getExpressionMatrixNames)
export(getFeatureDf)
export(getFeatureNames)
export(getGeneMetaData)
export(getGeneMetaDf)
export(getGenePosDf)
export(getGeneSet)
export(getGeneSetDf)
export(getGeneSetList)
export(getGeneSetOverview)
export(getGeneSets)
export(getGenes)
export(getGridVisiumHD)
export(getGroupNames)
export(getGroupingOptions)
export(getGseaDf)
export(getGseaResults)
export(getHistoImage)
export(getHistoImageRef)
export(getImage)
export(getImageAnnotationAreaDf)
export(getImageAnnotationCenter)
export(getImageAnnotationIds)
export(getImageAnnotationTags)
export(getImageCenter)
export(getImageDf)
export(getImageDims)
export(getImageDir)
export(getImageDirDefault)
export(getImageDirHighres)
export(getImageDirLowres)
export(getImageDirectories)
export(getImageNames)
export(getImageRange)
export(getImageRaster)
export(getImageRasterInfo)
export(getImageSectionsByBarcode)
export(getImageTransformations)
export(getImgAnnArea)
export(getImgAnnBorderDf)
export(getImgAnnCenter)
export(getImgAnnCenters)
export(getImgAnnIds)
export(getImgAnnOutlineDf)
export(getImgAnnRange)
export(getImgAnnTags)
export(getLogfileDf)
export(getMatrices)
export(getMatrix)
export(getMatrixNames)
export(getMetaDf)
export(getMetaVarDf)
export(getMetaboliteOverview)
export(getMetaboliteSet)
export(getMetaboliteSetList)
export(getMetaboliteSets)
export(getMetabolites)
export(getMethodSpecifics)
export(getModality)
export(getMoleculeCoordinates)
export(getMoleculeTypeList)
export(getMolecules)
export(getPcaDf)
export(getPcaMtr)
export(getPixelDf)
export(getPixelScaleFactor)
export(getPlatform)
export(getProcessedMatrix)
export(getProcessedMatrixNames)
export(getProjectionDf)
export(getProteinSet)
export(getProteinSetList)
export(getProteinSetOverview)
export(getProteinSets)
export(getProteins)
export(getResultsDf)
export(getResultsVec)
export(getSampleAreaSize)
export(getSampleName)
export(getSasDf)
export(getScaleFactor)
export(getSegmentationNames)
export(getSgsResultsDf)
export(getSgsResultsVec)
export(getSignature)
export(getSignatureList)
export(getSignatureNames)
export(getSignatureOverview)
export(getSignatureTypeList)
export(getSmrdResultsDf)
export(getSparkxGeneDf)
export(getSparkxGenes)
export(getSparkxResults)
export(getSpatAnnArea)
export(getSpatAnnBarcodes)
export(getSpatAnnCenter)
export(getSpatAnnCenterBcsp)
export(getSpatAnnCenters)
export(getSpatAnnIds)
export(getSpatAnnOutlineDf)
export(getSpatAnnRange)
export(getSpatAnnSf)
export(getSpatAnnTags)
export(getSpatSegmVarNames)
export(getSpataDf)
export(getSpataDir)
export(getSpatialAnnotation)
export(getSpatialAnnotations)
export(getSpatialData)
export(getSpatialMethod)
export(getSpatialTrajectories)
export(getSpatialTrajectory)
export(getSpatialTrajectoryIds)
export(getSpotSize)
export(getStsDf)
export(getTissueArea)
export(getTissueOutlineCentroid)
export(getTissueOutlineDf)
export(getTissueSections)
export(getTrajectory)
export(getTrajectoryDf)
export(getTrajectoryIds)
export(getTrajectoryLength)
export(getTrajectoryNames)
export(getTrajectoryObject)
export(getTrajectoryScreeningDf)
export(getTrajectorySegmentDf)
export(getTrajectoryWidth)
export(getTsneDf)
export(getUmapDf)
export(getVarTypeList)
export(getVariableMolecules)
export(getVariableNames)
export(ggpInit)
export(ggpLayerAxesClean)
export(ggpLayerAxesSI)
export(ggpLayerCaptureArea)
export(ggpLayerColorGroupScale)
export(ggpLayerEncirclingGroups)
export(ggpLayerEncirclingSAS)
export(ggpLayerExprEstimatesSAS)
export(ggpLayerFixFrame)
export(ggpLayerFrame)
export(ggpLayerFrameByCoords)
export(ggpLayerFrameByImage)
export(ggpLayerGridVisiumHD)
export(ggpLayerGroupOutline)
export(ggpLayerHorizonSAS)
export(ggpLayerImage)
export(ggpLayerImageAnnotation)
export(ggpLayerImgAnnBorder)
export(ggpLayerPoints)
export(ggpLayerRect)
export(ggpLayerSampleMask)
export(ggpLayerScaleBarSI)
export(ggpLayerScreeningDirectionSAS)
export(ggpLayerSpatAnnOutline)
export(ggpLayerSpatAnnPointer)
export(ggpLayerSpatAnnRect)
export(ggpLayerSpatialTrajectories)
export(ggpLayerThemeCoords)
export(ggpLayerTissueOutline)
export(ggpLayerTrajectories)
export(ggpLayerTrajectoryFrame)
export(ggpLayerZoom)
export(hlpr_adjust_legend_size)
export(hlpr_assign_arguments)
export(hlpr_breaks)
export(hlpr_dist_mtr_to_df)
export(hlpr_drop_all_na)
export(hlpr_gene_set_name)
export(hlpr_image_add_on)
export(hlpr_image_add_on2)
export(hlpr_image_to_df)
export(hlpr_join_with_aes)
export(hlpr_join_with_color_by)
export(hlpr_labs_add_on)
export(hlpr_normalize_imap)
export(hlpr_normalize_vctr)
export(hlpr_one_distinct)
export(hlpr_save_spata_object)
export(hlpr_scatterplot)
export(hlpr_smooth)
export(hlpr_smooth_shiny)
export(hlpr_subset_across)
export(hlpr_transfer_slot_content)
export(hlpr_vector_projection)
export(hlpr_widen_trajectory_df)
export(idSA)
export(idST)
export(identifyBackgroundColor)
export(identifySpatialOutliers)
export(identifyTissueOutline)
export(identifyTissueSections)
export(identifyVariableMolecules)
export(identify_obs_in_polygon)
export(identify_obs_in_spat_ann)
export(initiateSpataObject)
export(initiateSpataObjectMERFISH)
export(initiateSpataObjectSlideSeqV1)
export(initiateSpataObjectVisium)
export(initiateSpataObjectVisiumHD)
export(initiateSpataObjectXenium)
export(isDirVisium)
export(isFeature)
export(isGene)
export(isGeneSet)
export(isNumericVariable)
export(isSpatialTrajectory)
export(isTrajectory)
export(is_area)
export(is_area_pixel)
export(is_area_si)
export(is_dist)
export(is_dist_pixel)
export(is_dist_si)
export(is_outlier)
export(is_unit_area)
export(is_unit_dist)
export(joinWith)
export(joinWithFeatures)
export(joinWithGeneSets)
export(joinWithGenes)
export(joinWithPca)
export(joinWithTsne)
export(joinWithUmap)
export(joinWithVariables)
export(labsNone)
export(lastImageAnnotation)
export(legendBottom)
export(legendColor)
export(legendLeft)
export(legendNone)
export(legendRight)
export(legendTop)
export(loadExampleObject)
export(loadImage)
export(loadImageDefault)
export(loadImageHighres)
export(loadImageLowres)
export(loadImages)
export(loadSpataObject)
export(make_binary_image)
export(make_bins)
export(make_orthogonal_segment)
export(mapSpatialAnnotationTags)
export(map_to_tissue_section)
export(mergeGroups)
export(mergeSpatialAnnotations)
export(mergeTissueSections)
export(mergeWithTissueOutline)
export(merge_intersecting_polygons)
export(model_ascending)
export(model_descending)
export(model_formulas)
export(model_formulas_R2_est)
export(model_formulas_old)
export(model_peak)
export(model_trough)
export(nCounts)
export(nGenes)
export(nImageDims)
export(nImages)
export(nMetabolites)
export(nMolecules)
export(nObs)
export(nProteins)
export(nSpatialAnnotations)
export(nSpatialTrajectories)
export(nTrajectories)
export(normalizeCounts)
export(obsUnit)
export(plotAutoencoderAssessment)
export(plotAutoencoderResults)
export(plotBarchart)
export(plotBoxplot)
export(plotCnvHeatmap)
export(plotCnvLineplot)
export(plotCnvResults)
export(plotDeaDotPlot)
export(plotDeaHeatmap)
export(plotDeaVolcano)
export(plotDeaVolcano1v1)
export(plotDensityplot)
export(plotExprVsDistSA)
export(plotExprVsDistST)
export(plotGseaDotPlot)
export(plotHistogram)
export(plotImage)
export(plotImageAnnotations)
export(plotImageMask)
export(plotImages)
export(plotLoglik)
export(plotMolecules2D)
export(plotMosaicplot)
export(plotOverview)
export(plotPCA)
export(plotPca)
export(plotPcaElbow)
export(plotPcaVariation)
export(plotPixelContent)
export(plotRidgeplot)
export(plotRiverplot)
export(plotSasBarplot)
export(plotSasHeatmap)
export(plotSasLineplot)
export(plotSasRidgeplot)
export(plotScatterplot)
export(plotSpatialAnnotations)
export(plotSpatialTrajectories)
export(plotStatisticsInteractive)
export(plotStsBarplot)
export(plotStsHeatmap)
export(plotStsLineplot)
export(plotStsRidgeplot)
export(plotSurface)
export(plotSurfaceBase)
export(plotSurfaceComparison)
export(plotSurfaceInteractive)
export(plotSurfaceQuantiles)
export(plotSurfaceSAS)
export(plotSurfaceSC)
export(plotTSNE)
export(plotTrajectoryBarplot)
export(plotTrajectoryHeatmap)
export(plotTrajectoryLineplot)
export(plotTrajectoryRidgeplot)
export(plotTsne)
export(plotTsneComparison)
export(plotUMAP)
export(plotUmap)
export(plotUmapComparison)
export(plotVioBoxplot)
export(plotViolinplot)
export(prepare_coords_df_visium_hd)
export(printAutoencoderSummary)
export(printDefaultInstructions)
export(printGeneSetOverview)
export(processImage)
export(process_expand_input)
export(project_on_trajectory)
export(project_on_vector)
export(protected_spatial_method_info_slots)
export(protected_variable_names)
export(read_coords)
export(read_coords_merfish)
export(read_coords_slide_seq_v1)
export(read_coords_visium)
export(read_coords_xenium)
export(read_matrix_from_folder)
export(recDbscanEps)
export(recDbscanMinPts)
export(recSgsRes)
export(reduceResolutionVisiumHD)
export(reduceSpataObject)
export(reduce_coords_df_visium_hd)
export(refImage)
export(regexes)
export(registerImage)
export(relateToSpatialAnnotation)
export(relevelGroups)
export(removeGenes)
export(removeGenesMitochondrial)
export(removeGenesRibosomal)
export(removeGenesStress)
export(removeGenesZeroCounts)
export(removeImage)
export(removeMetaFeatures)
export(removeMolecules)
export(removeObs)
export(removeObsZeroCounts)
export(removeProcessedMatrix)
export(removeSpatialAnnotations)
export(removeSpatialOutliers)
export(removeSpatialTrajectories)
export(removeTissueFragments)
export(renameGroups)
export(renameImage)
export(renameMetaFeatures)
export(renameMolecularAssay)
export(renameSpataObject)
export(renameSpatialAnnotation)
export(renameSpatialTrajectory)
export(renameTissueSection)
export(resetImageJustification)
export(resetImageTransformations)
export(rotateAll)
export(rotateCoordinates)
export(rotateCoordsDf)
export(rotateImage)
export(rotateSpatialAnnotation)
export(rotateSpatialAnnotations)
export(rotateSpatialTrajectories)
export(rotateTissueOutlineDf)
export(rotate_coords_df)
export(runAutoencoderDenoising)
export(runBayesSpaceClustering)
export(runCNV)
export(runCnvAnalysis)
export(runDEA)
export(runDeAnalysis)
export(runGSEA)
export(runKmeansClustering)
export(runPCA)
export(runSPARKX)
export(runSeuratClustering)
export(runSparkx)
export(runTSNE)
export(runTsne)
export(runUMAP)
export(runUmap)
export(saveSpataObject)
export(scale_color_add_on)
export(scale_coords_df)
export(setActiveExpressionMatrix)
export(setActiveMatrix)
export(setAssay)
export(setCCD)
export(setCaptureArea)
export(setCnvResults)
export(setCoordsDf)
export(setCountMatrix)
export(setDeaResultsDf)
export(setDefault)
export(setDefaultInstructions)
export(setDenoisedMatrix)
export(setDirectoryInstructions)
export(setHistoImage)
export(setImage)
export(setImageAnnotation)
export(setImageAnnotations)
export(setImageDir)
export(setImageTransformations)
export(setLogfileDf)
export(setMetaDf)
export(setMetaVarDf)
export(setPcaDf)
export(setProcessedMatrix)
export(setScaleFactor)
export(setSpataDir)
export(setSpatialAnnotation)
export(setSpatialAnnotations)
export(setSpatialData)
export(setSpatialMethod)
export(setSpatialMethodInfo)
export(setSpatialMethodSlot)
export(setSpatialTrajectories)
export(setSpatialTrajectory)
export(setTrajectories)
export(setTrajectory)
export(setTsneDf)
export(setUmapDf)
export(setUpMetaVar)
export(sgs_loess_control)
export(shiftSpatialAnnotation)
export(shinyModuleZoomingServer)
export(showColorPalettes)
export(showColorSpectra)
export(showColors)
export(showModels)
export(simulate_complete_coords_sa)
export(simulate_complete_coords_st)
export(simulate_expression_pattern_sas)
export(simulate_expression_pattern_sts)
export(simulate_random_expression)
export(simulate_random_gradients)
export(smoothSpatialAnnotation)
export(spata2)
export(spatialAnnotationScreening)
export(spatialAnnotationToGrouping)
export(spatialTrajectoryScreening)
export(spatial_gradient_screening)
export(spatial_methods)
export(spatial_trajectory)
export(splitSpataObject)
export(subsetByBarcodes)
export(subsetSpataObject)
export(summarize_formulas)
export(tagSpatialAnnotations)
export(theme_lineplot_gradient)
export(theme_ridgeplot_gradient)
export(theme_trajectory_fit)
export(theme_transparent)
export(transform_area_si_to_pixel)
export(transform_area_si_to_pixels)
export(transform_coords)
export(transform_dist_si_to_pixel)
export(transform_dist_si_to_pixels)
export(transform_image)
export(transform_pixel_to_area_si)
export(transform_pixel_to_dist_si)
export(transform_pixels_to_area_si)
export(transform_pixels_to_dist_si)
export(unloadImage)
export(unloadImages)
export(updateS4)
export(updateSpataObject)
export(update_s4_architecture_of_spata2_object)
export(useVarForTissueOutline)
export(validActivationFunctions)
export(validAgglomerationMethods)
export(validAlluvialTypes)
export(validColorPalettes)
export(validColorSpectra)
export(validDeaMethods)
export(validDefaultInstructionSlots)
export(validDistanceMethods)
export(validHierarchicalClusterMethods)
export(validModelNames)
export(validPadjMethods)
export(validSpatialMethods)
export(validUnits)
export(validUnitsOfArea)
export(validUnitsOfAreaSI)
export(validUnitsOfLength)
export(visiumSpotDistances)
export(vselect)
export(whichTissueSection)
exportClasses(HistoImage)
exportClasses(HistoImaging)
exportClasses(HistologyImage)
exportClasses(HistologyImaging)
exportClasses(ImageAnnotation)
exportClasses(MolecularAssay)
exportClasses(SPATA2)
exportClasses(SpatialAnnotationScreening)
exportClasses(SpatialData)
exportClasses(SpatialGradientScreening)
exportClasses(SpatialMethod)
exportClasses(SpatialTrajectory)
exportClasses(SpatialTrajectoryScreening)
exportClasses(Trajectory)
exportClasses(data_counts)
exportClasses(default_instructions)
exportClasses(dim_red)
exportClasses(spata2)
exportClasses(spatial_trajectory)
exportMethods(activateImage)
exportMethods(activateImageInt)
exportMethods(activeImage)
exportMethods(addHistoImage)
exportMethods(addInnerBorder)
exportMethods(addSpatialAnnotation)
exportMethods(addTissueOutlineBase)
exportMethods(alignImage)
exportMethods(alignImageInteractive)
exportMethods(asMolecularAssay)
exportMethods(asSPATA2)
exportMethods(centerSpatialAnnotation)
exportMethods(centerTissueOutline)
exportMethods(computePixelScaleFactor)
exportMethods(containsCCD)
exportMethods(containsCells)
exportMethods(containsHistoImages)
exportMethods(containsImage)
exportMethods(containsInnerBorders)
exportMethods(containsMethod)
exportMethods(containsPixelContent)
exportMethods(containsScaleFactor)
exportMethods(containsSpatialAnnotations)
exportMethods(containsSpots)
exportMethods(containsTissueOutline)
exportMethods(getActive)
exportMethods(getBackgroundColor)
exportMethods(getCCD)
exportMethods(getCoordsDf)
exportMethods(getCountMatrix)
exportMethods(getHistoImage)
exportMethods(getHistoImageRef)
exportMethods(getImage)
exportMethods(getImageCenter)
exportMethods(getImageDf)
exportMethods(getImageDims)
exportMethods(getImageNames)
exportMethods(getImageRange)
exportMethods(getImageRaster)
exportMethods(getImageTransformations)
exportMethods(getMatrices)
exportMethods(getMatrix)
exportMethods(getMatrixNames)
exportMethods(getModality)
exportMethods(getPixelDf)
exportMethods(getPixelScaleFactor)
exportMethods(getPlatform)
exportMethods(getProcessedMatrix)
exportMethods(getProcessedMatrixNames)
exportMethods(getScaleFactor)
exportMethods(getSgsResultsDf)
exportMethods(getSgsResultsVec)
exportMethods(getSpatAnnArea)
exportMethods(getSpatAnnCenter)
exportMethods(getSpatAnnCenters)
exportMethods(getSpatAnnIds)
exportMethods(getSpatAnnOutlineDf)
exportMethods(getSpatAnnRange)
exportMethods(getSpatAnnTags)
exportMethods(getSpatialAnnotation)
exportMethods(getSpatialAnnotations)
exportMethods(getSpatialMethod)
exportMethods(getSpotSize)
exportMethods(getTissueOutlineCentroid)
exportMethods(getTissueOutlineDf)
exportMethods(getWindowSize)
exportMethods(ggpLayerImage)
exportMethods(ggpLayerPoints)
exportMethods(ggpLayerTissueOutline)
exportMethods(identifyBackgroundColor)
exportMethods(identifyPixelContent)
exportMethods(identifyTissueOutline)
exportMethods(loadImage)
exportMethods(loadImages)
exportMethods(nSpatialAnnotations)
exportMethods(obsUnit)
exportMethods(plotImage)
exportMethods(plotImageBase)
exportMethods(plotImageMask)
exportMethods(plotImages)
exportMethods(plotOverview)
exportMethods(plotPixelContent)
exportMethods(plotSpatialAnnotations)
exportMethods(plotSurface)
exportMethods(plotSurfaceComparison)
exportMethods(plotSurfaceSAS)
exportMethods(plotVolcano)
exportMethods(refImage)
exportMethods(registerImage)
exportMethods(removeImage)
exportMethods(renameImage)
exportMethods(resetImageTransformations)
exportMethods(rotateSpatialAnnotation)
exportMethods(setCoordsDf)
exportMethods(setHistoImage)
exportMethods(setImageDir)
exportMethods(setImageTransformations)
exportMethods(setScaleFactor)
exportMethods(setSpatialAnnotation)
exportMethods(setSpatialAnnotations)
exportMethods(setSpatialMethod)
exportMethods(setUpMetaVar)
exportMethods(show)
exportMethods(tagSpatialAnnotations)
exportMethods(unloadImage)
exportMethods(unloadImages)
exportMethods(updateS4)
import(SingleCellExperiment)
import(SummarizedExperiment)
import(grid)
import(units)
importFrom(Matrix,readMM)
importFrom(SPATAData,downloadSpataObject)
importFrom(SPATAData,downloadSpataObjects)
importFrom(Seurat,ScaleData)
importFrom(magrittr,"%>%")
importFrom(readr,read_tsv)
importFrom(stringr,str_subset)