| title | subtitle | layout |
|---|---|---|
Portfolio |
Papers, posters and slides |
page |
- RECOMB 2018 and ISMB 2017 • Tigmint: Correcting Misassemblies Using Linked Reads From Large Molecules
- RECOMB 2018 • ABySS 2.0: Resource-efficient assembly of large genomes using a Bloom filter
- PAG 2017 • Organellar Genomes of Sitka Spruce (Picea sitchensis): Assembly and Annotation
- SMRT Informatics Developers Conference 2017 • Graphical Fragment Assembly (GFA) 2.0
- ISMB 2016 • Homebrewing Science with Linuxbrew and Homebrew
- STAT545 2015 • Automating Data-analysis Pipelines using R and Make • hands-on activity
- VanBUG 2014 • Open, reproducible science using Make, RMarkdown and Pandoc
- More slides on Speaker Deck and SlideShare
- ISMB 2019 • Physlr: Construct a Physical Map from Linked Reads
- RECOMB 2018 and ISMB 2017 • Tigmint: Correcting Misassemblies Using Linked Reads From Large Molecules
- PAG 2017, AGBT 2017 • Organellar Genomes of Sitka Spruce (Picea sitchensis): Assembly and Annotation
- ISMB 2016 BOSC • Linuxbrew and Homebrew for Cross-platform Package Management
- ISMB 2016 HiTSeq • Organellar Genomes of White spruce (Picea glauca): Assembly and annotation
- RECOMB 2015 • Scaling ABySS to Longer Reads Using Spaced k-mers and Bloom Filters
- ISMB 2014 • ABySS-Konnector: Connecting Paired-end Reads by Navigating a bloom Filter de Bruijn Graph
- PAG 2014 • Assembling the Genomes of the Plastid and Mitochondrion of White Spruce (Picea glauca)
- APBC 2013 • Scaffolding Large Genomes Using Mate-pair Sequencing and ABySS
- BCCDC 2013 • Outbreak Investigation of Salmonella enteritidis Using Genomic Epidemiology
- STAT540 2013 • Analysis of Gene Expression Omnibus Leukaemia Data from the Illumina HumanMethylation450 Array