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Hello,
I am Anand, and I mostly develop academic open-source software tools for Genomics and Epi-genomics.
Some of the popular tools I developed are:
- maftools: A multi-functional, user-friendly software package for somatic variant analysis in cancer-related studies. It is also widely cited (>2000 times) and ranks among the top 100 most downloaded packages from Biocoductor repository.
- trackplot: A visualization tool to generate publication ready IGV style tracks from within R
- basegraphics: Data visualization using only base R graphics with complete code and the datasets. I also tweet at baseRgraphics
- methrix: A package for DNA methylation analysis from whole-genome bisulfite sequencing studies
- TCGAmutations: An R data package containing ready-to-use, pre-compiled somatic mutations along with the clinical annotations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
- somaticfreq: knowledge-based genotyping of cancer hotspots from the tumor BAM files
If you like what I do or find it useful, consider sponsoring me :)
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Featured work
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PoisonAlien/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
R 448 -
PoisonAlien/TCGAmutations
R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
R 88 -
CompEpigen/methrix
An R 📦 for fast and flexible DNA methylation analysis
R 28 -
PoisonAlien/trackplot
Generate IGV style locus tracks from bigWig files in R
R 140 -
PoisonAlien/somaticfreq
knowledge-based genotyping of cancer hotspots from the tumor BAM files
C 19 -
PoisonAlien/basegraphics
Pretty plots using pure base graphics in R
R 83