diff --git a/dependencies/lib/perl/JavaRun.pm b/dependencies/lib/perl/JavaRun.pm
index 5492adf..7156d36 100755
--- a/dependencies/lib/perl/JavaRun.pm
+++ b/dependencies/lib/perl/JavaRun.pm
@@ -25,7 +25,7 @@ sub new {
 #  $self->jvm("/h1/edmonsom/local/Linux_x86_64/jre1.6.0_15/bin/java");
 #  $self->jvm("/usr/bin/env java");
   $self->ram(512);
-  $self->jvm("/bin/env java");
+  $self->jvm("/usr/bin/env java");
 #  $self->classpath("/home/medmonso/lib/bambino.jar");
   $self->configure(%options);
   return $self;
diff --git a/src/main/scripts/junction_annotate.pl b/src/main/scripts/junction_annotate.pl
index d68cd2c..bb9cc62 100755
--- a/src/main/scripts/junction_annotate.pl
+++ b/src/main/scripts/junction_annotate.pl
@@ -1,4 +1,4 @@
-#!/bin/env perl
+#!/usr/bin/env perl
 # add annotations to a junction file from a GTF file (e.g. GenCode)
 #
 # MNE 2/2015