build_netcdf.sh not completing?

[ghost]

Hi,

Apologies for this issue, I don't fully understand why this is happening though, I am getting a few errors after running the build_netcdf, it reads the data files for a while and then:

creating netcdf variable targetPatterns (6765601, 3) /Users/Andrew/Desktop/rnnlib/examples/online_prediction/../../utils/normalise_netcdf.sh: line 65: ncks: command not found online_validation.nc online_validation.nc_ADJ {'outputArrayName': 'targetPatterns', 'maxArraySize': 8000000, 'stdMeanFilename': 'online.nc', 'booleanColomn': -1, 'bigFile': False, 'inputArrayName': 'targetPatterns'} inputFilename online_validation.nc loading in input array reading std deviations and means from online.nc Traceback (most recent call last): File "/Users/Andrew/Desktop/rnnlib/examples/online_prediction/../../utils/normalise_netcdf.py", line 64, in <module> inputStds = array(stdMeanFile.variables[options.inputArrayName+'Stds'].getValue()) KeyError: 'targetPatternsStds' /Users/Andrew/Desktop/rnnlib/examples/online_prediction/../../utils/normalise_netcdf.sh: line 79: ncks: command not found rm: online_validation.nc_ADJ: No such file or directory

Any help is appreciated,

Andy

[TonyWangX]

The NCO tool ncks is not found. You may install the NCO tools from http://nco.sourceforge.net.