docker-compose.yml

version: '3.5'

services:
  etcd:
    container_name: milvus-etcd
    image: quay.io/coreos/etcd:v3.5.5
    environment:
      - ETCD_AUTO_COMPACTION_MODE=revision
      - ETCD_AUTO_COMPACTION_RETENTION=1000
      - ETCD_QUOTA_BACKEND_BYTES=4294967296
      - ETCD_SNAPSHOT_COUNT=50000
    volumes:
      - ${DOCKER_VOLUME_DIRECTORY:-.}/volumes/etcd:/etcd
    command: etcd -advertise-client-urls=http://127.0.0.1:2379 -listen-client-urls http://0.0.0.0:2379 --data-dir /etcd

  minio:
    container_name: milvus-minio
    image: minio/minio:RELEASE.2022-03-17T06-34-49Z
    environment:
      MINIO_ACCESS_KEY: minioadmin
      MINIO_SECRET_KEY: minioadmin
    volumes:
      - ${DOCKER_VOLUME_DIRECTORY:-.}/volumes/minio:/minio_data
    command: minio server /minio_data
    healthcheck:
      test:
        [
          "CMD",
          "curl",
          "-f",
          "http://localhost:9000/minio/health/live"
        ]
      interval: 30s
      timeout: 20s
      retries: 3

  standalone:
    container_name: milvus-standalone
    image: milvusdb/milvus:v2.2.8
    command: [ "milvus", "run", "standalone" ]
    environment:
      ETCD_ENDPOINTS: etcd:2379
      MINIO_ADDRESS: minio:9000
    volumes:
      - ${DOCKER_VOLUME_DIRECTORY:-.}/volumes/milvus:/var/lib/milvus
    ports:
      - "19530:19530"
      - "9091:9091"
    depends_on:
      - "etcd"
      - "minio"

  neo4j:
    container_name: milvus-neo4j
    image: neo4j:4.4-enterprise
    environment:
      NEO4J_dbms_security_auth__enabled: "false"
      NEO4J_dbms_databases_default__to__read__only: "false"
      NEO4J_ACCEPT_LICENSE_AGREEMENT: "yes"
    volumes:
      - biocypher_neo4j_volume:/data 
      - ./scripts/import.sh:/scripts/import.sh
      - ./biocypher-out:/biocypher-out
    command:
      - /bin/bash
      - /scripts/import.sh
    networks:
      - default

  neo4j-deploy:
    container_name: neo4j-deploy
    image: neo4j:4.4-enterprise
    environment:
      NEO4J_dbms_security_auth__enabled: "false"
      NEO4J_dbms_databases_default__to__read__only: "false"
      NEO4J_ACCEPT_LICENSE_AGREEMENT: "yes"
    ports:
      - "7474:7474"
      - "7687:7687"
    volumes:
      - biocypher_neo4j_volume:/data 
    networks:
      - default

    
  app:
    image: biocypher/chatgse:0.2.35
    container_name: app
    ports:
      - "8501:8501"
    networks:
      - default
    depends_on:
      standalone:
        condition: service_completed_successfully
    environment:
      - OPENAI_API_KEY=${OPENAI_API_KEY}

networks:
  default:
    name: milvus

volumes:
  biocypher_neo4j_volume: