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setup.py
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setup.py
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import os
import shutil
import re
import sys
import platform
import subprocess
import time
import setuptools
from setuptools import find_packages
from setuptools import Extension, setup
from setuptools.command.build_ext import build_ext
from distutils.version import LooseVersion
import setuptools.command.build_ext
import setuptools.command.install
import setuptools.command.develop
import setuptools.command.build_py
setup_py_dir = os.path.dirname(os.path.realpath(__file__))
version = "0.2.9" # ANTsPy version
if "--weekly" in sys.argv:
sys.argv.remove("--weekly")
version = "%sa0" % version
class CMakeExtension(Extension):
def __init__(self, name, sourcedir=""):
Extension.__init__(self, name, sources=[])
self.sourcedir = os.path.abspath(sourcedir)
class install(setuptools.command.install.install):
def run(self):
setuptools.command.install.install.run(self)
class build_py(setuptools.command.build_py.build_py):
def run(self):
self.run_command("build_ext")
self.create_version_file()
setuptools.command.build_py.build_py.run(self)
@staticmethod
def create_version_file():
global version, setup_py_dir
print("-- Building version " + version)
version_path = os.path.join(setup_py_dir, "ants", "version.py")
with open(version_path, "w") as f:
f.write("__version__ = '{}'\n".format(version))
class BuildExtFirst(setuptools.command.install.install):
def run(self):
self.run_command("build_py")
return setuptools.command.install.install.run(self)
class CMakeBuild(build_ext):
def run(self):
## Find or Configure VTK ##
# print('Configuring VTK')
# if os.getenv('VTK_DIR'):
# print('Using Local VTK Installation at:\n %s' % os.getenv('VTK_DIR'))
# elif os.path.exists(os.path.join(setup_py_dir, 'vtkbuild')):
# print('Using local VTK already built for this package')
# os.environ['VTK_DIR'] = os.path.join(setup_py_dir, 'vtkbuild')
# else:
# print('No local VTK installation found... Building VTK now...')
# subprocess.check_call(['./scripts/configure_VTK.sh'], cwd=setup_py_dir)
# os.environ['VTK_DIR'] = os.path.join(setup_py_dir, 'vtkbuild')
## Find or Configure ITK ##
print("Configuring ITK")
if os.getenv("ITK_DIR"):
print("Using Local ITK Installation at:\n %s" % os.getenv("ITK_DIR"))
elif os.path.exists(os.path.join(setup_py_dir, "itkbuild/ITKConfig.cmake")):
print("Using local ITK already built for this package")
os.environ["ITK_DIR"] = os.path.join(setup_py_dir, "itkbuild")
else:
print("No local ITK installation found... Building ITK now...")
subprocess.check_call(["./scripts/configure_ITK.sh"], cwd=setup_py_dir)
os.environ["ITK_DIR"] = os.path.join(setup_py_dir, "itkbuild")
## Find or Configure ANTs ##
print("Configuring ANTs core")
subprocess.check_call(["./scripts/configure_ANTsPy.sh"], cwd=setup_py_dir)
## Configure ANTsPy library ##
print("Configuring ANTsPy library")
try:
out = subprocess.check_output(["cmake", "--version"])
except OSError:
raise RuntimeError(
"CMake must be installed to build the following extensions: "
+ ", ".join(e.name for e in self.extensions)
)
cmake_version = LooseVersion(
re.search(r"version\s*([\d.]+)", out.decode()).group(1)
)
if cmake_version < "3.10.0":
raise RuntimeError("CMake >= 3.10.0 is required")
for ext in self.extensions:
self.build_extension(ext)
def build_extension(self, ext):
setup_py_dir = os.path.dirname(os.path.realpath(__file__))
extdir = os.path.join(setup_py_dir, "ants/lib/")
cmake_args = [
"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=" + extdir,
"-DPYTHON_EXECUTABLE=" + sys.executable,
]
cfg = "Release"
build_args = ["--config", cfg]
if platform.system() == "Windows":
cmake_args += [
"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY_{}={}".format(cfg.upper(), extdir)
]
if sys.maxsize > 2 ** 32:
cmake_args += ["-A", "x64"]
build_args += ["--", "/m"]
else:
cmake_args += ["-DCMAKE_BUILD_TYPE=" + cfg]
build_args += ["--", "-j2"]
env = os.environ.copy()
env["CXXFLAGS"] = '{} {} -DVERSION_INFO=\\"{}\\"'.format(
"-Wno-inconsistent-missing-override",
env.get("CXXFLAGS", ""),
self.distribution.get_version(),
)
env["LINKFLAGS"] = "{}".format("-Wno-inconsistent-missing-override")
if not os.path.exists(self.build_temp):
os.makedirs(self.build_temp)
subprocess.check_call(
["cmake", ext.sourcedir] + cmake_args, cwd=self.build_temp, env=env
)
subprocess.check_call(
["cmake", "--build", "."] + build_args, cwd=self.build_temp
)
long_description = open("README.md").read()
setup(
name="antspyx",
version=version,
install_requires=[
"pandas",
"numpy",
"scipy",
"scikit-image",
"scikit-learn",
"statsmodels",
"webcolors",
"matplotlib",
"pyyaml",
"chart_studio",
"Pillow",
"nibabel",
],
author="Brian B. Avants and Nicholas Cullen",
author_email="stnava@gmail.com",
description="Advanced Normalization Tools in Python",
long_description=long_description,
long_description_content_type="text/markdown; charset=UTF-8; variant=GFM",
ext_modules=[
CMakeExtension("ants", sourcedir=os.path.join(setup_py_dir, "ants/lib/"))
],
cmdclass={"build_py": build_py, "build_ext": CMakeBuild, "install": BuildExtFirst},
zip_safe=False,
packages=find_packages(),
package_data={"ants": ["ants/lib/*.so*", "lib/*.so*", "ants/lib/*.so", "lib/*.so"]},
url="https://github.com/ANTsX/ANTsPy",
classifiers=["Programming Language :: Python :: 3.6"],
)