Python module that provide an alternative view of the outputs produced by the software pyani
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Updated
Jan 29, 2020 - Python
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average-nucleotide-identity
Here are 7 public repositories matching this topic...
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
taxonomy
mlst
virulence-factor
average-nucleotide-identity
multi-locus-sequence-typing
bacillus
bacillus-cereus
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May 8, 2024 - Python
skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequences using average nucleotide identity (ANI)
bioinformatics
metagenomics
average-nucleotide-identity
mobile-genetic-elements
whole-genome-assembly
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May 29, 2024 - Python
Application and Python module for average nucleotide identity analyses of microbes.
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Oct 16, 2024 - Python
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
clustering
viruses
taxonomic-classification
dereplication
average-nucleotide-identity
sequence-similarity
genome-sequence
bacteriophages
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Oct 22, 2024 - Python
skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
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Updated
Oct 29, 2024 - Python
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
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Updated
Nov 7, 2024 - Python
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