Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

🐳 Apollo 2.X Docker Image

LLM-driven curation assist tool

Curation of Neurodegeneration in Biological Expression Language (CONIB)

The Curation of Neurodegeneration Supporting Ontology (CONSO)

Text mining for pharmacogenomic associations for PharmGKB

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

My personal website, served at https://cthoyt.com

Guidelines and procedures for curation (manual and semi-automated)

An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)

📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

Code, notebooks, and resources for exploring and analyzing mechanistic knowledge graphs about 'rona

🗄️ Conversion of biomedical nomenclatures like HGNC to OBO

Git and continuous integration tools for PyBEL to assist in curating BEL

PomBase curation

Results from semi-automated curation with INDRA/PyBEL

Proyecto de manejo de información digital sobre pruebas de función respiratoria mediante anotación semántica con Hypothes.is

Next-generation Biocuration App for annotating cases and PhenoPackets