Calculating AA frequencies from codon design, and vice versa

Codon decoder, taking a input from user, then the program will display the type protein created by the codon

Taxonomic Identity PREdiction: homework for Machine Learning Course 2021 (MSc Bioinformatics for Computational Genomics)

It is simple codon optimiser by using codon bias and usage

Program in R for calculating RSCU.

Research on position-dependent hydrogen bonds per codon

Predicting Taxonomic Identity and Genetic Composition of Codon Usage Bias Levels Using Deep Learning Models

Analysis of codon usage in oncogene families.

Calculate CUB indices and optimize the gene sequence to enhance expression

A tool for dynamically calculating the codon usage bias in bacterial genomes and querying of a database for Codon Bias statistical analysis

Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs

A script for codon harmonization.

Retrieving nucleotide sequences for PDB and Uniprot structure on a large scale. Analysis of synonymous codons and codon usage on protein structure and evolution.

CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

A Novel Approach to Codon Optimization Based on Machine Learning and Genetic Algorithm

A tool with nice GUI to visualize the codon usage frequencies in whole genomes

A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.

Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)

Analysis of codon positional dependency