Program in R for calculating RSCU.
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Updated
Sep 23, 2024 - R
Program in R for calculating RSCU.
A Go package for designing DNA.
Retrieving nucleotide sequences for PDB and Uniprot structure on a large scale. Analysis of synonymous codons and codon usage on protein structure and evolution.
R Package for Codon Usage Bias Analysis
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Calculate CUB indices and optimize the gene sequence to enhance expression
A python project for analysis of codon usage for gene or genome analysis
Python3 implementation of commonly used codon usage statistics
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)
Predicting Taxonomic Identity and Genetic Composition of Codon Usage Bias Levels Using Deep Learning Models
Python package of codon usage bias analysis tools
Comparative analysis pipeline of Population's Codon Usage
A slimmed down fork of CodonW with python bindings
A Novel Approach to Codon Optimization Based on Machine Learning and Genetic Algorithm
It is simple codon optimiser by using codon bias and usage
MATLAB package for codon usage bias and NGS analysis
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
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