Automatically link across pages in MkDocs.
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Nov 26, 2024 - Python
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cross-linking
Here are 27 public repositories matching this topic...
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
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Mar 28, 2022 - C++
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Oct 3, 2023 - Python
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
search-engine proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms
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Dec 2, 2024
Export MS Annika crosslink results to different formats.
visualization python proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms
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Jun 21, 2024 - Python
A fast and exhaustive cross-linked peptides identification tool.
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Dec 9, 2023 - Java
Extensions for better usability of the cross-linking tool MaXLinker.
python proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms
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Sep 4, 2023 - Python
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
python annotation proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 fragment-ions crosslinking xlms crosslinker tandem-ms doublet-ions
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Sep 4, 2023 - Python
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
electron-microscopy small-angle-xray-scattering x-ray-crystallography integrative-modeling cross-linking comparative-models
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Nov 10, 2024 - Python
Modeling of the SEA complex
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Jan 14, 2021 - HTML
Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"
lammps cross-linking metastability condensates langevin-dynamics polymer-physics llps phase-separation
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Nov 18, 2024 - Jupyter Notebook
List of all available extensions for our cross-linking search engine MS Annika.
search-engine extension proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms
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Jun 21, 2024
Modeling of the Nup84 subcomplex of the Nuclear Pore Complex
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Nov 8, 2024 - Python
A script to merge and optionally validate several MS Annika search results.
python merge join proteomics mass-spectrometry spectrometry combine mass cross-linking crosslinking xlms crosslinker tandem-ms
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Jan 24, 2024 - Python
Short talk presentation, poster and abstract for APMRS-CEEPC 2024
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Sep 20, 2024
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
search-engine mass-spectrometry spectrometry mass cross-linking ms3 crosslinking xlms crosslinker tandem-ms
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Oct 2, 2023 - Jupyter Notebook
Helper scripts for crosslink analysis.
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Sep 4, 2023 - Python
Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
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Nov 7, 2024 - Python
A script and functions to group and validate MS Annika results.
python validation discovery rate proteomics mass-spectrometry spectrometry false mass false-discovery-rate fdr cross-linking crosslinking xlms crosslinker tandem-ms
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Jun 19, 2024 - Python
My Z80 Tools - Credits to Piergiorgio Betti - https://www.z80cpu.eu/projects/78-data-articles/projects/76-mdz80
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Jul 24, 2020 - C
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