Deduplication for cfDNA sequencing data
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Updated
Jul 5, 2017 - Python
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ctdna
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Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
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Jan 8, 2021 - Python
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
somatic-variants somatic-mutations snv ctdna snvs cfdna vardict mutect2 cell-free-dna snv-annotation indel lofreq sinvict
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Nov 8, 2022 - Python
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
bioinformatics feature-selection classification wgs ctdna deconvolution whole-genome-sequencing cfdna cell-free-dna fractional-phenotype-estimation
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Jun 6, 2024 - Python
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