Base-conversion Sequencing Aligner

A bundle of HAMRtools for High-throughput RNA modification prediction and analysis

Guide for the Baccarelli Lab GitHub

Database of pairwise consensuses for miR-mRNA target interactions

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.

handful of tools that might be needed before or after HAMR

High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation

High-throughput Workflow for Processing and Analyzing RNA-Seq Data

Repository for the R package RNAModR

Ultrafast bisulfite

CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.

Magnipore: Differential single nucleotide changes of ONT signals

Online version of tool is live

🧪 Optimized protocol for m6A-SAC-seq

Analyse RNA feature distributions.

🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing