Visualizing transcript structure and annotation using ggplot2
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Aug 24, 2024 - R
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gene-annotation
Here are 43 public repositories matching this topic...
A minimal desktop app for easy and convenient gene annotation and lookup.
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Dec 7, 2022 - JavaScript
Annotate DNA sequences for Gene Ontology terms
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Jul 2, 2022 - Perl
Deep learning methods for feature selection in gene expression autism data.
data-mining deep-learning neural-network feature-detection numpy gene-expression python3 feature-selection feature-extraction gene-annotation autism microarray-data ncbi-database gene-expression-profiles ttest google-colab features-extraction autism-data fisher-score annotated-genes
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Jun 21, 2022 - Jupyter Notebook
An R framework for phylostratigraphy
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Dec 17, 2022 - R
Structural variant VCF annotation, duplicate removal and comparison
gene-annotation structural-variation vcf-comparison vcf-filtering delly sv-annotation sv-merging vcf-annotation
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Dec 8, 2024 - C++
Pipeline for the identification of (coding) gene structures in draft genomes.
workflow pipeline annotation nextflow assembly gene-annotation genome-annotation genome-assembly nf-core draft-genome
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May 9, 2024 - Nextflow
fastest GTF/GFF-to-BED converter chilling around
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Dec 11, 2024 - Rust
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
gene-annotation gene-ontology pathways kegg pathway-analysis reactome kegg-pathway real-time-analytics enrichment-analysis real-time-processing functional-analysis kegg-gene gene-set-clustering
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Oct 30, 2020 - Perl
high-performance BED-to-GTF converter written in Rust
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Nov 20, 2024 - Rust
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
methylation gene-annotation epigenome methylases methyltransferases dna-methlyase dna-methyltransferase
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Jun 13, 2024 - Shell
cool BED-to-GFF3 converter that runs in parallel
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Apr 13, 2024 - Rust
scripts associated with yam genome assembly
coverage assembly ngs dna gene-annotation genome-assembly phasing gene-prediction ngs-pipeline busco
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May 8, 2020 - Python
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation
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Mar 10, 2023 - Python
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
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Feb 22, 2023 - Shell
The post-TOGA processing pipeline
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Nov 26, 2024 - Python
Integrative systems analysis identifying the associations between genes and biological process or modules.
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Aug 25, 2023 - R
Co-occurrence of enzyme domains
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Sep 16, 2020 - Jupyter Notebook
GTF/GFF per gene non-overlapping exon length calculator
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Jan 2, 2024 - Rust
The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"
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Dec 5, 2021 - Python
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