Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A fully automated gene annotator from RNA-Seq expression data

Frequently used commands in bioinformatics

A python package and a set of shell commands to handle GTF files

Life is short, *****.

Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.

A small library to work with ensembl and other annotations in python

Gexplora - user-interface to analyse genomic elements along chromosomes

Lift annotations from a GTF file to an adata object.

Convert gtf to gff3 for JBrowse

Management of References for Yourself

A Python script to filter and extract information from GTF files based on chromosome names, designed to be easily accessible for biologists without extensive programming experience.

Custom python scripts useful for working with genome assemblies and annotations

Gene Info Extractor: A Python script to extract gene information and annotations from CSV data