Metagenomic binning based on Hi-C data

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

MGKit: Metagenomics Framework

MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards

A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.

🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean

Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

🐴 CLinically Okay Metagenomic Pipeline 🐴

A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline

KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

quantify-virome: identify and quantify viruses from metagenomic shotgun sequences

A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.

Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"

iMAGine - In silico Metagenomics Pipeline

宏基因组预测

Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP

MAPle provides three different modules for the analysis of paired-end short read metagenomic data

Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur