Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

The Trypanosoma cruzi Antigen and Epitope Atlas: deep characterization of individual antibody specificities in human Chagas Disease patients across the Americas

My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).

Source code and description of GCSscore Package

GEO microarray data analysis

plant microarrya analysis from expression datasets

Nextcast: a software suite to analyse and model toxicogenomics data