Various functions for analysis of microbial community data
The is mostly a wrapper tool using phyloseq and microbiome R packages.
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Functions to manipulate and visualize microbial community data
Environmental metagenomics, Spring 2021, Physalia Courses
Environmental metagenomics, Spring 2022, Physalia Courses
3D Analysis of confocal images of microbial biofilms/communities
Chemical metrics for microbial communities
Data and code for LaMartina et al., 2021
BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data
Data and code for Kimbell et al., 2021
a versatile approach to integrate heterogeneous datasets
Structured Queries and analyses used with MetamapsDB
Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
This repository contains all code used to perform the analysis presented in "Changes in the microbial communities of a tree fern along an elevation gradient"
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