A React component to sketch / search for network motifs.

Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.

Automatic Motif Detection wrapper for dotmotif

Intro to Bioinformatics course contents

This application searches inside a text sequence for words that resemble those inside a list of similar words.

Deep Unfolded Convolutional Dictionary Learning for motif discovery.

Bioinformatics- High-throughput data Analysis project

Motif Finding using Gibbs Sampler

Motif Finding through Gibbs Sampling

Scans TF binding sites based on motifs.

This is a scanner designed to recognise DNA motifs within a long stretch of DNA. It uses two models for discrimination, one model representing the target and the second model representing the background.

R script for finding and scoring motifs in small genomes using position-frequency tables

Perl script to find sequences on multi fasta files that match a determined protein motif. The motifs are coded as a regular expression RegEx. Originally designed to search for fungal chitin synthase proteins.

Example implementation of "Mueen's Algorithm for Similarity Search" (aka MASS) for ESP32

Finding Network Motifs Using MCMC Sampling

Finding motifs in proteins by uniprot accession number

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Coding problems from course 1 of the Bioinformatics specialization