FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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Updated
Nov 21, 2023 - Python
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Deep learning methods for feature selection in gene expression autism data.
Assign taxonomy with blast, can be used for qiime
Microarray Analysis Pipeline in Python
🌱 ➡️ 🌳 Add new taxa or taxonomic groups to the NCBI Taxdump files
Julia package to handle the NCBI Taxonomy database.
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree
An R code to convert NCBI data files into CSV
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format
Bio Python Project using getopt library in python and engaging with the command line prompt.
Find and retrieve biological data and its metadata from NCBI
Identifying viruses as an anomaly
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
NCBI Datasets is an experimental resource for finding and building datasets
Crawling NCBI Pubmed Data using HTML and jQuery
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
How to download genomes using the accession number
tair id to pubmed links for articls, genes, annotations, locus tag
Add a description, image, and links to the ncbi-database topic page so that developers can more easily learn about it.
To associate your repository with the ncbi-database topic, visit your repo's landing page and select "manage topics."