A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
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Updated
Jan 20, 2022 - Python
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Use R snippets as python functions. Manage R dependencies separately.
A complete python interface to Racmacs via rpy2
Graphical user interface allows easy access to the multiscale model-free idealization methods in the R-package clampSeg (https://cran.r-project.org/package=clampSeg). It supports the model-free segmentation methods JSMURF (https://ieeexplore.ieee.org/document/6655999), JULES (https://ieeexplore.ieee.org/document/8374882) and HILDE (https://arxiv…
Python and R scripts written to perform some cleaning work on a dataset of Smithsonian Trinomials taken from American Antiquity issues ranging from 2004 to 2013.
COVID 19 state wise + India + International prediction with data visualization and live curve prediction
PROFILE RNA-seq binarization technique.
This repository contains all codes necessary to reproduce figures and results reported in Stein, Barbosa et al. (Nature Communications, 2020) from the raw data acquired in human behavioral experiments (data included in the repository), and from the relevant model simulations.
Share Apache Arrow datasets between Python and R.
Convert between AnnData and SingleCellExperiment
Python Channel Attribution (pychattr) - A Python implementation of the excellent R ChannelAttribution library
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