V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Single Cell RNA Sequencing with Hybrid Pipeline

Analysis of the origin of SARS-COV 2, how could this pandemic have started?

Covid19 UI | Local Data Tracker & Compare the number of deaths in Countries

Trabalho de conclusão de curso, com o objetivo de desenvolver um pipeline que auxilie decisões de estudos epidemiológicos, além de possíveis análises e diagnósticos laboratoriais.

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

Covid-19 Sentimental Analysis of Twitter Dataset using Python and Tweepy Library

Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)

Vacunacion COVID19 España

A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.

COVID-19 Turkey API

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)

SARS-CoV-2 data from Greece | GR | EN

COVID-19 Turkey API and Telegram Bot

Automatic RNA extraction protocol in OT-2 system (Opentrons)