ABRA2

✂️ Deep learning-based splice site predictor that improves spliced alignments

Splice junction analysis and filtering from BAM files

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

Toolkit and pipeline for processing short- and long-read RNA sequencing data.

Deep neural network for splice sites prediction

Splicing assembly for non-model organisms using RNAseq data

This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.

Classification of Splice Junction sites using Neural Networks with Python and Keras

A tool to create sequences for primers targeting exon-exon splice junctions

Comparing translation of open reading frames within individual transcripts

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".