A unified framework for tabular probabilistic regression, time-to-event prediction, and probability distributions in python

Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.

Attention-based Deep MIL implementation and application

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

A Random Survival Forest implementation for python inspired by Ishwaran et al. - Easily understandable, adaptable and extendable.

DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep learning

Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021

Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models

DeepMTS: Deep Multi-Task Survival model for joint survival prediction and tumor segmentation

Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data

Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis

ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data

Survival Prediction for Gastric Cancer via Multimodal Learning of Whole Slide Images and Gene Expression -- BIBM 2022

GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -- CMPB 2023

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

We provide a method to extract the tractographic features from structural MR images for patients with brain tumor

AdaMSS: Adaptive Multi-Modality Segmentation-to-Survival Learning for Survival Outcome Prediction

[ACM-BCB 2023 Oral Presentation] Official repository of "Deep learning-based survival prediction using DNA methylation-derived 3D genomic information"

[MICCAI2023] XSurv: Merging-Diverging Hybrid Transformer Networks for Survival Prediction

Code for a paper on estimation and evaluation of penalized survival models with high dimensional left-truncated and right-censored (LTRC) survival data