A standalone and free application to explore genetics variations from VCF file

A utility to merge a large number of VCF files incrementally

Classes and functions for use with bioinformatics.

A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.

Your VCF converted to XLS from now. VCF stands for Variant Call Format and it is used by bioinformatics projects to encode structural genetic variants.

High-throughput Tabular Data Processor (HTDP)

SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda

Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".

A simple python implementation of Variant Call Format intersection and complements for identifying genetic mutations

Converts XLSX documents into VCF (Variant Call Format) - remastered for JDK1.8 2023

Convert an standard VCF to JSON format

A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

A WDL-based workflow for extraction of variants and their associated info from large VCF files

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning