A fast whole-genome aligner based on de Bruijn graphs
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
Co-processor for whole genome alignment
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
A simple script to run an alignment with nucmer and visualise its results.
A package for handling whole genome alignments by Pádraic Corcoran and Henry Barton
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Draft workflow for pairwise genome comparison. We recommend you use the new nf-core version instead: https://nf-cor.e/pairgenomealign
Evolutionary genomics of chromosomal inversions in Atlantic herring
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