[23:59:33] This is prokka 1.11
[23:59:33] Written by Torsten Seemann <torsten.seemann@monash.edu>
[23:59:33] Victorian Bioinformatics Consortium - http://www.vicbioinformatics.com
[23:59:33] Local time is Wed Oct 26 23:59:33 2016
[23:59:33] You are regelka
[23:59:33] Operating system is linux
[23:59:33] You have BioPerl 1.006923
[23:59:33] System has 48 cores.
[23:59:33] Will use maximum of 8 cores.
[23:59:33] Annotating as >>> Bacteria <<<
[23:59:33] Creating new output folder: REGE2
[23:59:33] Running: mkdir -p REGE2
[23:59:33] Using filename prefix: prefix.XXX
[23:59:33] Setting HMMER_NCPU=1
[23:59:33] Writing log to: REGE2/prefix.log
[23:59:33] Command: --force --outdir REGE2 --prefix prefix --locustag locustag --increment 10 --addgenes --centre goettingen --metagenome --cpus 8 --mincontiglen 200 --rfam --rnammer sorted_for_prokka.fasta
[23:59:33] Looking for 'aragorn' - found /opt/bin/aragorn
[23:59:33] Determined aragorn version is 1.2
[23:59:33] Looking for 'blastp' - found /usr/bin/blastp
[23:59:33] Determined blastp version is 2.2
[23:59:33] Looking for 'cmpress' - found /usr/local/bin/cmpress
[23:59:33] Determined cmpress version is 1.1
[23:59:33] Looking for 'cmscan' - found /usr/local/bin/cmscan
[23:59:33] Determined cmscan version is 1.1
[23:59:33] Looking for 'egrep' - found /usr/bin/egrep
[23:59:33] Looking for 'find' - found /usr/bin/find
[23:59:33] Looking for 'grep' - found /usr/bin/grep
[23:59:33] Looking for 'hmmpress' - found /usr/local/bin/hmmpress
[23:59:33] Determined hmmpress version is 3.1
[23:59:33] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
[23:59:33] Determined hmmscan version is 3.1
[23:59:33] Looking for 'less' - found /usr/bin/less
[23:59:33] Looking for 'makeblastdb' - found /usr/bin/makeblastdb
[23:59:33] Determined makeblastdb version is 2.2
[23:59:33] Looking for 'minced' - found /opt/tools/prokka/bin/../binaries/linux/../common/minced
[23:59:33] Determined minced version is 1.6
[23:59:33] Looking for 'parallel' - found /usr/local/bin/parallel
[23:59:34] Determined parallel version is 20150522
[23:59:34] Looking for 'prodigal' - found /opt/bin/prodigal
[23:59:34] Determined prodigal version is 2.60
[23:59:34] Looking for 'prokka-genbank_to_fasta_db' - found /opt/tools/prokka/bin/prokka-genbank_to_fasta_db
[23:59:34] Looking for 'rnammer' - found /opt/bin/rnammer
[23:59:34] Determined rnammer version is 1.2
[23:59:34] Looking for 'sed' - found /usr/bin/sed
[23:59:34] Looking for 'signalp' - found /opt/tools/signalp
[23:59:34] Determined signalp version is 4.1
[23:59:34] Looking for 'tbl2asn' - found /opt/bin/tbl2asn
[23:59:34] Determined tbl2asn version is 24.9
[23:59:34] Will use RNAmmer instead of Barrnap for rRNA prediction
[23:59:34] Using genetic code table 11.
[23:59:34] Loading and checking input file: sorted_for_prokka.fasta
[00:01:22] Wrote 391555 contigs
[00:01:22] Predicting tRNAs and tmRNAs
[00:01:22] Running: aragorn -gc11  -w REGE2\/prefix\.fna
[00:01:22] 1 tRNA-Met c[516,590] 35 (cat)
[00:01:22] 1 tRNA-Gly [760,837] 38 (gcc)
[00:01:22] 1 tRNA-Gln c[804,878] 33 (ttg)
[00:01:22] 1 tRNA-Trp c[476,551] 34 (cca)
[00:01:23] 1 tRNA-Ser [643,732] 35 (tga)
[00:01:23] 1 tRNA-Leu c[331,417] 35 (gag)
[00:01:23] 1 tRNA-Asn [506,581] 34 (gtt)
[00:01:24] 1 tRNA-Leu c[125,211] 35 (caa)
[00:01:24] 1 tRNA-Ser [545,5] 36 (cag)
[00:01:24] tRNA [545,5] has start(545) > end (5) - skipping.
[00:01:24] 1 tRNA-Ser [82,171] 35 (cga)
[00:01:24] 1 tRNA-Thr [114,189] 34 (tgt)
[00:01:25] 1 tRNA-Ser [257,340] 35 (tga)
[00:01:25] 1 tRNA-Gly [120,194] 33 (tcc)
[00:01:25] 2 tRNA-Thr [355,430] 34 (ggt)
[00:01:25] 1 tRNA-Gly [141,215] 33 (gcc)
[00:01:25] 2 tRNA-Cys [361,434] 33 (gca)
[00:01:25] 1 tRNA-Arg c[524,54] 35 (acg)
[00:01:25] tRNA c[524,54] has start(524) > end (54) - skipping.
[00:01:25] 2 tRNA-Val c[81,154] 35 (gac)
[00:01:25] 3 tRNA-Gly c[221,294] 34 (gcc)
[00:01:25] 4 tRNA-Ala c[375,447] 34 (ggc)
[00:01:25] 1 tRNA-Val c[368,444] 35 (gac)
[00:01:25] 1 tRNA-Val c[113,187] 33 (cac)
[00:01:25] 1 tRNA-Arg [231,306] 34 (tct)
[00:01:25] 2 tRNA-His [323,397] 33 (gtg)
[00:01:25] 1 tRNA-Ile [329,402] 35 (gat)
[00:01:25] 1 tRNA-Arg [179,256] 37 (tcg)
[00:01:25] 1 tRNA-Ser [354,443] 35 (tga)
[00:01:26] 1 tRNA-Gly c[326,399] 33 (ccc)
[00:01:26] 1 tRNA-Glu c[201,276] 35 (ttc)
[00:01:26] 2 tRNA-Ala c[304,379] 34 (ggc)
[00:01:26] 1 tRNA-His c[202,276] 33 (gtg)
[00:01:26] 2 tRNA-Arg c[307,383] 35 (tct)
[00:01:26] 1 tRNA-Thr c[61,136] 33 (cgt)
[00:01:26] 1 tRNA-Met [139,213] 34 (cat)
[00:01:27] 1 tRNA-seC c[92,188] 37 (tca)
[00:01:27] 1 tRNA-Pro c[165,241] 35 (cgg)
[00:01:28] 1 tRNA-Leu [253,339] 35 (gag)
[00:01:28] 1 tRNA-Cys c[91,164] 33 (gca)
[00:01:28] 2 tRNA-Gly c[238,313] 34 (gcc)
[00:01:28] 1 tRNA-Thr c[109,182] 34 (tgt)
[00:01:28] 1 tRNA-Val [168,244] 35 (gac)
[00:01:28] 1 tRNA-Ser [152,241] 35 (tga)
[00:01:29] 1 tRNA-Ser [132,225] 35 (gct)
[00:01:29] 1 tRNA-Leu [174,258] 35 (tag)
[00:01:29] 1 tRNA-Asp c[335,427] 34 (gtc)
[00:01:29] 1 tRNA-Arg c[10,85] 34 (tct)
[00:01:30] 1 tRNA-Gln [209,287] 36 (ttg)
[00:01:30] 1 tRNA-Ser c[139,233] 35 (gct)
[00:01:30] 1 tRNA-Ser [77,166] 35 (tga)
[00:01:30] 1 tRNA-Ile [269,345] 35 (gat)
[00:01:30] 1 tRNA-Arg c[72,148] 35 (ccg)
[00:01:30] 1 tRNA-Gln [16,88] 33 (ttg)
[00:01:31] 1 tRNA-Ala [245,320] 34 (cgc)
[00:01:31] 1 tRNA-Pro [130,206] 35 (cgg)
[00:01:32] 1 tRNA-Met c[166,242] 35 (cat)
[00:01:32] 1 tRNA-Lys c[320,393] 34 (ttt)
[00:01:32] 1 tRNA-Phe c[226,301] 34 (gaa)
[00:01:32] 1 tRNA-Met c[97,173] 35 (cat)
[00:01:32] 1 tRNA-Gln [164,236] 33 (ttg)
[00:01:32] 1 tRNA-seC c[233,329] 37 (tca)
[00:01:33] 1 tRNA-Thr c[336,18] 30 (tgt)
[00:01:33] tRNA c[336,18] has start(336) > end (18) - skipping.
[00:01:33] 1 tRNA-Thr c[233,307] 33 (cgt)
[00:01:33] 1 tRNA-Val [19,94] 34 (tac)
[00:01:33] 2 tRNA-Asp [184,260] 35 (gtc)
[00:01:33] 1 tRNA-Lys [163,236] 34 (ttt)
[00:01:33] 1 tRNA-Asn c[25,101] 35 (gtt)
[00:01:33] 2 tRNA-Ala c[188,262] 34 (tgc)
[00:01:34] 1 tRNA-Arg [232,308] 35 (ccg)
[00:01:34] 1 tRNA-Lys c[226,301] 34 (ttt)
[00:01:34] 1 tRNA-Pro [348,53] 38 (ggg)
[00:01:34] tRNA [348,53] has start(348) > end (53) - skipping.
[00:01:34] 1 tRNA-Gly [92,166] 33 (gcc)
[00:01:34] 1 tRNA-Arg c[202,278] 35 (tct)
[00:01:34] 1 tRNA-Met c[262,338] 35 (cat)
[00:01:35] 1 tRNA-Gly [167,240] 34 (gcc)
[00:01:35] 2 tRNA-Cys [270,341] 33 (gca)
[00:01:35] 1 tRNA-Met [136,212] 35 (cat)
[00:01:35] 1 tRNA-Asn [165,239] 33 (gtt)
[00:01:35] 1 tRNA-Ile [114,190] 35 (gat)
[00:01:35] 2 tRNA-Ala [247,322] 34 (tgc)
[00:01:35] 1 tRNA-Asn c[163,238] 34 (gtt)
[00:01:36] 1 tRNA-Ser c[101,190] 35 (tga)
[00:01:36] 1 tRNA-Ala [108,183] 34 (tgc)
[00:01:36] 1 tRNA-Ala c[189,263] 34 (ggc)
[00:01:36] 1 tRNA-Val c[56,131] 34 (cac)
[00:01:36] 1 tRNA-Thr c[13,87] 33 (ggt)
[00:01:36] 2 tRNA-Gly c[95,168] 33 (tcc)
[00:01:36] 3 tRNA-Tyr c[177,263] 35 (gta)
[00:01:37] 1 tRNA-Pro [142,218] 35 (ggg)
[00:01:37] 1 tRNA-His [230,304] 35 (gtg)
[00:01:37] 1 tRNA-Thr [113,217] 40 (ggt)
[00:01:37] 1 tRNA-Gln c[2,75] 31 (ctg)
[00:01:37] 1 tRNA-Arg [57,143] 30 (tcg)
[00:01:37] 1 tRNA-Ser c[263,4] 38 (cga)
[00:01:37] tRNA c[263,4] has start(263) > end (4) - skipping.
[00:01:37] 1 tRNA-Arg c[115,187] 34 (ccg)
[00:01:37] 1 tRNA-seC [187,282] 35 (tca)
[00:01:38] 1 tRNA-Met [2,78] 35 (cat)
[00:01:38] 1 tRNA-His [123,199] 35 (gtg)
[00:01:39] 1 tRNA-Ile [11,85] 35 (gat)
[00:01:39] 1 tRNA-Cys [194,268] 34 (gca)
[00:01:39] 1 tRNA-Ala [65,140] 34 (tgc)
[00:01:39] 1 tRNA-Lys c[135,210] 34 (ctt)
[00:01:39] 1 tRNA-??? [252,5] 33 (tc)
[00:01:39] tRNA [252,5] has start(252) > end (5) - skipping.
[00:01:39] 1 tRNA-Leu c[28,114] 35 (taa)
[00:01:39] 2 tRNA-Gly c[185,258] 34 (gcc)
[00:01:39] 1 tRNA-Arg [101,201] 39 (ccg)
[00:01:39] 1 tRNA-Val [243,319] 35 (gac)
[00:01:39] 1 tRNA-Gly [90,163] 34 (ccc)
[00:01:39] 1 tRNA-Lys c[84,159] 34 (ttt)
[00:01:39] 2 tRNA-Tyr c[179,263] 35 (gta)
[00:01:40] 1 tRNA-Gly c[101,174] 33 (ccc)
[00:01:40] 1 tRNA-Met [254,328] 35 (cat)
[00:01:40] 1 tRNA-Ser c[87,173] 35 (cag)
[00:01:40] 1 tRNA-Arg [123,199] 35 (acg)
[00:01:40] 1 tRNA-Ile c[151,225] 35 (gat)
[00:01:40] 1 tRNA-Thr c[232,306] 33 (tgt)
[00:01:41] 1 tRNA-Gly [48,119] 33 (ccc)
[00:01:41] 1 tRNA-Thr [173,248] 34 (tgt)
[00:01:41] 1 tRNA-Pro c[48,125] 36 (ggg)
[00:01:41] 1 tRNA-seC c[124,220] 35 (tca)
[00:01:41] 1 tRNA-Ile c[73,149] 35 (gat)
[00:01:41] 1 tRNA-Thr [159,231] 33 (tgt)
[00:01:42] 1 tRNA-Arg c[49,121] 35 (tcg)
[00:01:42] 1 tRNA-Trp [137,212] 34 (cca)
[00:01:42] 1 tRNA-Met c[180,254] 35 (cat)
[00:01:42] 1 tRNA-Gly [98,171] 33 (ccc)
[00:01:42] 1 tRNA-Phe [149,249] 38 (gaa)
[00:01:42] 1 tRNA-Trp [93,168] 34 (cca)
[00:01:42] 1 tRNA-Thr c[173,246] 33 (ggt)
[00:01:42] 1 tRNA-Pro c[92,168] 35 (tgg)
[00:01:43] 1 tRNA-Val c[113,187] 33 (tac)
[00:01:43] 1 tRNA-Arg [166,241] 34 (cct)
[00:01:43] 1 tRNA-Leu c[193,277] 35 (gag)
[00:01:44] 1 tRNA-Leu [227,309] 35 (tag)
[00:01:44] 1 tRNA-Gln [13,89] 35 (ttg)
[00:01:44] 1 tRNA-Asn [104,178] 35 (gtt)
[00:01:44] 1 tRNA-Thr c[77,152] 34 (cgt)
[00:01:44] 1 tRNA-Met c[133,207] 35 (cat)
[00:01:44] 1 tRNA-Leu c[21,107] 35 (taa)
[00:01:44] 2 tRNA-Cys c[128,201] 33 (gca)
[00:01:44] 1 tRNA-Thr c[153,228] 34 (cgt)
[00:01:44] 1 tRNA-Ala [124,197] 34 (ggc)
[00:01:44] 1 tRNA-Arg c[197,271] 35 (tcg)
[00:01:44] 1 tRNA-Leu c[209,296] 35 (taa)
[00:01:45] 1 tRNA-Leu [196,290] 35 (gag)
[00:01:45] 1 tRNA-Val [79,153] 33 (gac)
[00:01:45] 1 tRNA-Thr [280,68] 39 (cgt)
[00:01:45] tRNA [280,68] has start(280) > end (68) - skipping.
[00:01:45] 1 tRNA-Val [79,151] 33 (tac)
[00:01:45] 2 tRNA-Asp [170,246] 35 (gtc)
[00:01:45] 1 tRNA-Glu c[68,142] 34 (ctc)
[00:01:46] 1 tRNA-Arg c[197,275] 35 (gcg)
[00:01:46] 1 tRNA-Ser [53,143] 35 (gct)
[00:01:46] 1 tRNA-Leu [153,237] 35 (tag)
[00:01:46] 1 tRNA-Tyr [61,147] 35 (gta)
[00:01:47] 1 tRNA-Ser [176,266] 35 (gga)
[00:01:47] 1 tRNA-Arg c[97,173] 35 (ccg)
[00:01:47] 1 tRNA-Thr [200,271] 34 (cgt)
[00:01:47] 1 tRNA-Met [78,151] 35 (cat)
[00:01:47] 1 tRNA-Trp c[74,149] 34 (cca)
[00:01:47] 1 tRNA-Ser c[112,199] 35 (cga)
[00:01:47] 1 tRNA-Val [209,283] 33 (cac)
[00:01:48] 1 tRNA-Ser [162,248] 35 (cag)
[00:01:48] 1 tRNA-Ala [59,134] 34 (cgc)
[00:01:48] 1 tRNA-Asp [120,196] 35 (gtc)
[00:01:48] 1 tRNA-Ala [20,95] 34 (ggc)
[00:01:48] 1 tRNA-Lys c[99,174] 34 (ttt)
[00:01:49] 1 tRNA-Ala [41,115] 35 (tgc)
[00:01:49] 1 tRNA-Leu [140,224] 35 (tag)
[00:01:49] 1 tRNA-Pro [73,149] 35 (tgg)
[00:01:49] 1 tRNA-Cys [130,218] 31 (gca)
[00:01:49] 1 tRNA-Pro c[58,134] 35 (cgg)
[00:01:49] 1 tRNA-Gly [29,102] 33 (tcc)
[00:01:49] 1 tRNA-Leu [99,182] 34 (caa)
[00:01:50] 1 tRNA-His [43,118] 35 (gtg)
[00:01:50] 2 tRNA-Trp [161,235] 35 (cca)
[00:01:50] 1 tRNA-Pro c[157,234] 36 (ggg)
[00:01:51] 1 tRNA-Gly c[51,125] 33 (ccc)
[00:01:51] 1 tRNA-Val c[50,125] 34 (tac)
[00:01:51] 1 tRNA-Leu [96,183] 35 (gag)
[00:01:51] 1 tRNA-Ser c[54,143] 35 (cga)
[00:01:51] 1 tRNA-Arg [70,146] 35 (tct)
[00:01:52] 1 tRNA-Leu c[94,180] 35 (gag)
[00:01:52] 1 tRNA-Gln [40,113] 33 (ctg)
[00:01:52] 1 tRNA-Asp [85,161] 35 (gtc)
[00:01:52] 1 tRNA-Ala [91,176] 30 (cgc)
[00:01:52] 1 tRNA-Gln c[59,132] 33 (ctg)
[00:01:53] 1 tRNA-Ala c[205,281] 35 (ggc)
[00:01:53] 1 tRNA-Pro c[131,207] 35 (tgg)
[00:01:53] 1 tRNA-Arg c[74,150] 35 (acg)
[00:01:53] 1 tRNA-Gly [28,102] 34 (gcc)
[00:01:53] 1 tRNA-Ala [47,122] 34 (cgc)
[00:01:53] 1 tRNA-Asp [60,149] 34 (atc)
[00:01:54] 1 tRNA-Val c[129,204] 36 (tac)
[00:01:55] 1 tRNA-Ile c[81,157] 35 (gat)
[00:01:55] 2 tRNA-Ala c[204,279] 34 (tgc)
[00:01:55] 1 tRNA-Ala c[125,201] 35 (tgc)
[00:01:55] 1 tRNA-Leu c[6,89] 34 (caa)
[00:01:55] 1 tRNA-Ser [62,149] 35 (tga)
[00:01:55] 1 tRNA-Ala c[77,152] 34 (cgc)
[00:01:55] 1 tRNA-Ser c[7,98] 32 (cag)
[00:01:55] 1 tRNA-Met c[124,200] 35 (cat)
[00:01:55] 1 tRNA-Thr [270,60] 32 (ggt)
[00:01:55] tRNA [270,60] has start(270) > end (60) - skipping.
[00:01:55] 1 tRNA-Arg c[80,156] 35 (acg)
[00:01:55] 2 tRNA-Gly c[208,283] 34 (gcc)
[00:01:55] 1 tRNA-Ser [115,202] 35 (gga)
[00:01:56] 1 tRNA-Pro [66,142] 35 (ggg)
[00:01:56] 1 tRNA-Phe [90,165] 34 (gaa)
[00:01:56] 1 tRNA-Met c[73,149] 35 (cat)
[00:01:56] 1 tRNA-Leu c[188,273] 34 (gag)
[00:01:56] 1 tRNA-Thr [33,106] 34 (tgt)
[00:01:56] 1 tRNA-Arg [26,102] 35 (acg)
[00:01:56] 1 tRNA-Ala c[54,151] 37 (tgc)
[00:01:57] 1 tRNA-Ser c[129,214] 36 (cag)
[00:01:58] 1 tRNA-Thr [134,209] 34 (cgt)
[00:01:58] 1 tRNA-Lys c[80,155] 34 (ctt)
[00:01:58] 2 tRNA-His c[165,240] 34 (gtg)
[00:01:58] 1 tmRNA* c[27,48] 458,487 AGIAGSSEA*
[00:01:59] 1 tRNA-Thr c[13,87] 33 (ggt)
[00:01:59] 2 tRNA-Gly c[95,168] 33 (tcc)
[00:01:59] 1 tRNA-Ala [55,130] 34 (cgc)
[00:01:59] 1 tRNA-Gly c[4,79] 34 (gcc)
[00:01:59] 1 tRNA-Pro [273,78] 34 (cgg)
[00:01:59] tRNA [273,78] has start(273) > end (78) - skipping.
[00:01:59] 1 tRNA-Arg c[50,126] 36 (ccg)
[00:01:59] 2 tRNA-His c[138,212] 34 (gtg)
[00:02:00] 1 tRNA-Ser c[96,182] 35 (cag)
[00:02:00] 1 tRNA-Ser c[202,14] 32 (cga)
[00:02:00] tRNA c[202,14] has start(202) > end (14) - skipping.
[00:02:00] 1 tRNA-Leu c[58,142] 35 (gag)
[00:02:00] 1 tRNA-Phe c[179,254] 34 (gaa)
[00:02:00] 1 tRNA-Arg [91,167] 35 (ccg)
[00:02:00] 1 tRNA-Cys c[114,186] 33 (gca)
[00:02:01] 1 tRNA-Val [36,129] 32 (cac)
[00:02:01] 1 tRNA-Arg c[52,128] 35 (tct)
[00:02:01] 2 tRNA-Pro c[134,210] 35 (tgg)
[00:02:02] 1 tRNA-Asp c[93,167] 35 (gtc)
[00:02:02] 1 tRNA-Asn c[54,126] 33 (gtt)
[00:02:02] 2 tRNA-Cys c[130,204] 36 (gca)
[00:02:02] 1 tRNA-Asp [145,242] 35 (atc)
[00:02:02] 1 tRNA-Pro c[65,141] 35 (tgg)
[00:02:02] 1 tRNA-Ser [95,181] 35 (cag)
[00:02:02] 1 tRNA-Met c[141,215] 35 (cat)
[00:02:02] 1 tRNA-Met [65,141] 35 (cat)
[00:02:02] 1 tRNA-Leu c[93,177] 35 (tag)
[00:02:02] 1 tRNA-His [268,66] 31 (gtg)
[00:02:02] tRNA [268,66] has start(268) > end (66) - skipping.
[00:02:02] 1 tRNA-Val c[192,266] 33 (gac)
[00:02:02] 1 tRNA-Ile [132,208] 35 (gat)
[00:02:02] 2 tRNA-Ala [212,12] 34 (tgc)
[00:02:02] tRNA [212,12] has start(212) > end (12) - skipping.
[00:02:02] 1 tRNA-Leu [51,136] 35 (gag)
[00:02:02] 1 tRNA-Gln [47,121] 33 (ttg)
[00:02:03] 1 tRNA-Thr [202,22] 33 (cgt)
[00:02:03] tRNA [202,22] has start(202) > end (22) - skipping.
[00:02:03] 1 tRNA-Asp c[92,168] 35 (gtc)
[00:02:04] 1 tRNA-Ser c[88,177] 35 (gga)
[00:02:05] 1 tRNA-Leu c[125,211] 35 (taa)
[00:02:05] 2 tRNA-Cys c[223,28] 34 (gca)
[00:02:05] tRNA c[223,28] has start(223) > end (28) - skipping.
[00:02:06] 1 tRNA-Arg [44,120] 35 (tct)
[00:02:06] 1 tRNA-Asp c[123,199] 35 (gtc)
[00:02:06] 1 tRNA-Leu c[80,164] 35 (tag)
[00:02:07] 1 tRNA-Ala [129,204] 34 (cgc)
[00:02:07] 1 tRNA-Tyr c[127,211] 35 (gta)
[00:02:08] 1 tRNA-Glu c[115,190] 35 (ttc)
[00:02:08] 1 tRNA-Ala [186,259] 35 (ggc)
[00:02:08] 1 tRNA-Ala c[95,170] 34 (ggc)
[00:02:08] 1 tRNA-Leu c[127,212] 34 (caa)
[00:02:09] 1 tRNA-Phe c[137,212] 34 (gaa)
[00:02:09] 1 tRNA-Thr [98,173] 34 (cgt)
[00:02:09] 1 tRNA-Asp c[96,172] 35 (gtc)
[00:02:09] 2 tRNA-Val c[197,4] 34 (tac)
[00:02:09] tRNA c[197,4] has start(197) > end (4) - skipping.
[00:02:10] 1 tRNA-Met [122,198] 35 (cat)
[00:02:10] 1 tRNA-Leu [7,83] 35 (taa)
[00:02:11] 1 tRNA-Lys c[55,129] 33 (ctt)
[00:02:11] 1 tRNA-Met c[141,215] 35 (cat)
[00:02:11] 1 tRNA-Asn c[177,251] 33 (gtt)
[00:02:12] 1 tRNA-Ala [217,48] 32 (ggc)
[00:02:12] tRNA [217,48] has start(217) > end (48) - skipping.
[00:02:12] 1 tRNA-Val [47,123] 35 (tac)
[00:02:12] 1 tRNA-??? [72,166] 34 (tcca)
[00:02:12] 1 tRNA-Lys [84,159] 34 (ctt)
[00:02:12] 1 tRNA-Val [109,183] 33 (gac)
[00:02:12] 1 tRNA-Gly [111,184] 33 (tcc)
[00:02:13] 1 tRNA-Thr c[37,110] 33 (tgt)
[00:02:13] 1 tRNA-Ala c[192,23] 35 (ggc)
[00:02:13] tRNA c[192,23] has start(192) > end (23) - skipping.
[00:02:13] 1 tRNA-Val [11,98] 39 (gac)
[00:02:13] 1 tRNA-Leu c[119,205] 35 (taa)
[00:02:13] 1 tRNA-Arg [109,184] 34 (cct)
[00:02:13] 1 tRNA-Trp c[48,123] 34 (cca)
[00:02:14] 1 tRNA-Glu [179,253] 34 (ttc)
[00:02:14] 1 tRNA-Glu c[34,107] 35 (ttc)
[00:02:14] 1 tRNA-Ser c[22,114] 35 (gct)
[00:02:14] 1 tRNA-Val c[3,77] 35 (gac)
[00:02:14] 1 tRNA-Arg c[74,149] 35 (tct)
[00:02:14] 1 tRNA-Ala c[59,133] 34 (cgc)
[00:02:15] 1 tRNA-Gln c[91,165] 33 (ttg)
[00:02:16] 1 tRNA-Val c[138,232] 35 (tac)
[00:02:16] 1 tRNA-Gly [26,99] 34 (ccc)
[00:02:16] 2 tRNA-Gln [115,188] 34 (ctg)
[00:02:16] 1 tRNA-Met [151,226] 34 (cat)
[00:02:17] 1 tRNA-Phe [172,247] 34 (gaa)
[00:02:17] 1 tRNA-Pro [169,244] 35 (cgg)
[00:02:17] 1 tRNA-Ala [131,226] 35 (tgc)
[00:02:17] 1 tRNA-Ser c[129,219] 35 (gga)
[00:02:17] 1 tRNA-Ser [31,121] 35 (gga)
[00:02:18] 1 tRNA-Val c[130,203] 34 (tac)
[00:02:18] 1 tRNA-Ala [70,145] 34 (cgc)
[00:02:19] 1 tRNA-Ala [212,25] 30 (cgc)
[00:02:19] tRNA [212,25] has start(212) > end (25) - skipping.
[00:02:19] 1 tRNA-Ser [52,135] 38 (cga)
[00:02:20] 1 tRNA-Ser [90,183] 35 (gct)
[00:02:20] 1 tRNA-Lys [146,218] 33 (ttt)
[00:02:20] 1 tRNA-Pro [85,159] 35 (tgg)
[00:02:20] 2 tRNA-Arg [174,248] 35 (tct)
[00:02:20] 1 tRNA-Val c[80,154] 33 (gac)
[00:02:20] 1 tRNA-Pro c[114,190] 35 (cgg)
[00:02:20] 1 tRNA-Arg c[109,184] 36 (tct)
[00:02:21] 1 tRNA-Ser [128,218] 35 (gct)
[00:02:21] 1 tRNA-Met [72,145] 34 (cat)
[00:02:22] 1 tRNA-Phe c[12,87] 34 (gaa)
[00:02:22] 1 tRNA-Tyr [91,175] 35 (gta)
[00:02:22] 1 tRNA-Val [136,211] 34 (tac)
[00:02:23] 1 tRNA-Asp [196,32] 35 (gtc)
[00:02:23] tRNA [196,32] has start(196) > end (32) - skipping.
[00:02:23] 1 tRNA-Asn [37,110] 34 (gtt)
[00:02:24] 1 tRNA-Pro [41,114] 35 (tgg)
[00:02:24] 1 tRNA-Val [87,160] 33 (tac)
[00:02:25] 1 tRNA-Leu [63,148] 35 (taa)
[00:02:25] 1 tRNA-Phe [134,207] 34 (gaa)
[00:02:25] 1 tRNA-Leu [71,156] 34 (taa)
[00:02:25] 1 tRNA-Arg c[127,201] 35 (cct)
[00:02:25] 1 tRNA-Lys [162,248] 36 (ttt)
[00:02:26] 1 tRNA-Val [120,210] 36 (gac)
[00:02:26] 1 tRNA-Glu c[33,110] 37 (ttc)
[00:02:26] 1 tRNA-Glu c[54,126] 34 (ctc)
[00:02:26] 2 tRNA-Glu c[150,222] 34 (ttc)
[00:02:26] 1 tRNA-Met [56,131] 34 (cat)
[00:02:26] 1 tRNA-Phe c[101,176] 34 (gaa)
[00:02:27] 1 tRNA-Ala c[184,10] 37 (cgc)
[00:02:27] tRNA c[184,10] has start(184) > end (10) - skipping.
[00:02:27] 1 tRNA-Gly c[29,101] 33 (tcc)
[00:02:28] 1 tRNA-Trp c[167,242] 34 (cca)
[00:02:28] 1 tRNA-Lys [110,184] 35 (ttt)
[00:02:28] 1 tRNA-Val [114,189] 34 (tac)
[00:02:28] 1 tRNA-Pro [79,155] 35 (tgg)
[00:02:28] 1 tRNA-Thr [42,118] 35 (tgt)
[00:02:28] 1 tRNA-Leu [147,229] 35 (tag)
[00:02:28] 1 tRNA-Ser [134,221] 35 (gga)
[00:02:28] 1 tRNA-Gln c[69,142] 34 (ctg)
[00:02:28] 2 tRNA-Met c[158,229] 33 (cat)
[00:02:28] 1 tRNA-Leu c[93,176] 34 (taa)
[00:02:28] 1 tRNA-Val [138,215] 36 (gac)
[00:02:28] 1 tRNA-seC c[69,168] 36 (tca)
[00:02:29] 1 tRNA-Met [19,95] 35 (cat)
[00:02:29] 1 tRNA-Leu c[87,173] 35 (caa)
[00:02:29] 1 tRNA-Val c[92,167] 34 (tac)
[00:02:29] 1 tRNA-Arg [101,178] 36 (tct)
[00:02:30] 1 tRNA-Gln [135,207] 34 (ctg)
[00:02:30] 1 tRNA-Gly c[167,240] 33 (tcc)
[00:02:30] 1 tRNA-Ala c[221,68] 38 (cgc)
[00:02:30] tRNA c[221,68] has start(221) > end (68) - skipping.
[00:02:30] 1 tRNA-His c[151,225] 35 (gtg)
[00:02:30] 1 tRNA-Ser c[152,238] 35 (cag)
[00:02:31] 1 tRNA-Arg c[185,33] 36 (tcg)
[00:02:31] tRNA c[185,33] has start(185) > end (33) - skipping.
[00:02:31] 1 tRNA-Leu c[99,181] 35 (tag)
[00:02:32] 1 tRNA-Gln c[246,70] 33 (ttg)
[00:02:32] tRNA c[246,70] has start(246) > end (70) - skipping.
[00:02:32] 1 tRNA-Thr c[63,138] 34 (cgt)
[00:02:32] 1 tRNA-Gly c[94,167] 33 (ccc)
[00:02:33] 1 tRNA-Pro c[165,240] 36 (agg)
[00:02:34] 1 tRNA-Gly c[202,51] 35 (tcc)
[00:02:34] tRNA c[202,51] has start(202) > end (51) - skipping.
[00:02:34] 1 tRNA-Thr c[18,91] 34 (ggt)
[00:02:34] 1 tRNA-Met c[72,148] 35 (cat)
[00:02:34] 1 tRNA-Cys [94,165] 33 (gca)
[00:02:34] 1 tRNA-Lys c[2,77] 34 (ctt)
[00:02:34] 1 tRNA-Gln [152,225] 33 (ttg)
[00:02:35] 1 tRNA-Ser [163,5] 35 (tga)
[00:02:35] tRNA [163,5] has start(163) > end (5) - skipping.
[00:02:35] 1 tRNA-Ser c[232,78] 34 (gct)
[00:02:35] tRNA c[232,78] has start(232) > end (78) - skipping.
[00:02:35] 1 tRNA-Phe [133,205] 34 (gaa)
[00:02:36] 1 tRNA-Arg [196,33] 37 (acg)
[00:02:36] tRNA [196,33] has start(196) > end (33) - skipping.
[00:02:36] 1 tRNA-Arg [243,75] 35 (acg)
[00:02:36] tRNA [243,75] has start(243) > end (75) - skipping.
[00:02:37] 1 tRNA-Ala c[58,148] 34 (ggc)
[00:02:37] 1 tRNA-Met [100,176] 35 (cat)
[00:02:37] 1 tRNA-Val [94,170] 35 (gac)
[00:02:37] 1 tRNA-Pro [89,166] 36 (tgg)
[00:02:37] 1 tRNA-Arg c[74,146] 34 (tcg)
[00:02:38] 1 tRNA-Arg c[50,125] 34 (acg)
[00:02:38] 1 tRNA-Asn c[6,80] 35 (gtt)
[00:02:39] 1 tRNA-Gln c[92,165] 33 (ctg)
[00:02:39] 1 tRNA-Leu c[133,216] 35 (caa)
[00:02:39] 1 tRNA-Glu c[140,215] 35 (ctc)
[00:02:39] 1 tRNA-Ala c[116,191] 34 (ggc)
[00:02:39] 1 tRNA-Thr c[72,147] 34 (cgt)
[00:02:40] 1 tRNA-Thr c[108,200] 35 (cgt)
[00:02:40] 1 tRNA-Ser [82,166] 38 (cga)
[00:02:40] 1 tRNA-Ala [70,144] 35 (cgc)
[00:02:41] 1 tRNA-Leu [153,230] 34 (gag)
[00:02:41] 1 tRNA-Ser [162,7] 35 (tga)
[00:02:41] tRNA [162,7] has start(162) > end (7) - skipping.
[00:02:41] 1 tRNA-Lys c[97,172] 34 (ctt)
[00:02:41] 1 tRNA-Gln c[130,206] 35 (ttg)
[00:02:42] 1 tRNA-Arg c[153,225] 34 (cct)
[00:02:43] 1 tRNA-Thr c[235,66] 34 (ggt)
[00:02:43] tRNA c[235,66] has start(235) > end (66) - skipping.
[00:02:43] 2 tRNA-Gly c[137,210] 34 (tcc)
[00:02:43] 1 tRNA-Arg c[32,108] 35 (ccg)
[00:02:43] 1 tRNA-Phe c[134,208] 35 (gaa)
[00:02:43] 1 tRNA-Leu [77,161] 35 (gag)
[00:02:43] 1 tRNA-Lys c[76,151] 34 (ttt)
[00:02:45] 1 tRNA-Val c[45,119] 33 (gac)
[00:02:45] 1 tRNA-Thr c[88,163] 34 (cgt)
[00:02:45] 1 tRNA-Ala c[64,138] 35 (tgc)
[00:02:45] 1 tRNA-Met c[89,165] 35 (cat)
[00:02:45] 1 tRNA-Gly c[238,78] 32 (gcc)
[00:02:45] tRNA c[238,78] has start(238) > end (78) - skipping.
[00:02:45] 2 tRNA-Gly [3,80] 32 (acc)
[00:02:46] 1 tRNA-Val [129,201] 34 (cac)
[00:02:46] 1 tRNA-Arg c[123,217] 34 (tcg)
[00:02:46] 1 tRNA-seC [119,213] 35 (tca)
[00:02:47] 1 tRNA-Val [97,170] 35 (tac)
[00:02:47] 1 tRNA-Gly c[27,102] 34 (gcc)
[00:02:47] 1 tRNA-Ser [39,123] 35 (cag)
[00:02:48] 1 tRNA-Thr c[166,237] 33 (tgt)
[00:02:48] 1 tRNA-Ser [69,152] 36 (cag)
[00:02:48] 1 tRNA-Leu c[47,131] 35 (caa)
[00:02:48] 1 tRNA-Arg c[43,117] 34 (ccg)
[00:02:49] 1 tRNA-Ser [132,217] 35 (gga)
[00:02:49] 1 tRNA-Ala c[11,85] 35 (ggc)
[00:02:49] 1 tRNA-seC c[89,185] 35 (tca)
[00:02:49] 1 tRNA-Gly [5,78] 33 (gcc)
[00:02:50] 1 tRNA-Ser c[86,175] 35 (cga)
[00:02:50] 1 tRNA-Gln [64,163] 38 (ttg)
[00:02:51] 1 tRNA-Thr c[178,19] 37 (ggt)
[00:02:51] tRNA c[178,19] has start(178) > end (19) - skipping.
[00:02:51] 1 tRNA-Glu [29,104] 35 (ttc)
[00:02:51] 1 tRNA-His [224,61] 33 (gtg)
[00:02:51] tRNA [224,61] has start(224) > end (61) - skipping.
[00:02:51] 2 tRNA-Arg [84,160] 35 (ccg)
[00:02:51] 1 tRNA-Leu c[157,4] 35 (gag)
[00:02:51] tRNA c[157,4] has start(157) > end (4) - skipping.
[00:02:51] 1 tRNA-Lys [96,171] 34 (ctt)
[00:02:51] 1 tRNA-Ser [35,119] 35 (cag)
[00:02:51] 1 tRNA-Leu c[27,112] 35 (taa)
[00:02:52] 1 tRNA-Arg c[233,71] 35 (gcg)
[00:02:52] tRNA c[233,71] has start(233) > end (71) - skipping.
[00:02:52] 1 tRNA-Tyr c[1,84] 35 (gta)
[00:02:52] 1 tRNA-Thr [89,164] 34 (ggt)
[00:02:52] 1 tRNA-Ser [103,188] 36 (cag)
[00:02:52] 1 tRNA-Leu [8,94] 35 (caa)
[00:02:52] 1 tRNA-Arg [138,218] 36 (cct)
[00:02:53] 1 tRNA-Tyr [117,205] 36 (gta)
[00:02:53] 1 tRNA-Leu [120,204] 34 (caa)
[00:02:53] 1 tRNA-Arg [26,102] 35 (gcg)
[00:02:53] 2 tRNA-His [117,188] 33 (gtg)
[00:02:53] 1 tRNA-Thr [2,77] 34 (tgt)
[00:02:53] 1 tRNA-Gln [35,108] 33 (ctg)
[00:02:53] 1 tRNA-Arg [50,125] 36 (tct)
[00:02:53] 1 tRNA-Glu [81,158] 37 (ttc)
[00:02:54] 1 tRNA-His [63,151] 29 (gtg)
[00:02:55] 1 tRNA-Lys c[104,179] 34 (ttt)
[00:02:55] 1 tRNA-Ser [42,131] 35 (cga)
[00:02:56] 1 tRNA-Leu c[16,102] 35 (gag)
[00:02:56] 1 tRNA-Arg c[17,93] 35 (ccg)
[00:02:56] 1 tRNA-Val c[109,182] 35 (gac)
[00:02:57] 1 tRNA-Ala c[40,115] 34 (cgc)
[00:02:57] 1 tRNA-Ala c[151,226] 34 (cgc)
[00:02:57] 1 tRNA-Asp [98,172] 35 (gtc)
[00:02:57] 1 tRNA-Ser c[78,172] 35 (gct)
[00:02:58] 1 tRNA-Thr [55,130] 34 (tgt)
[00:02:59] 1 tRNA-Val c[45,120] 35 (tac)
[00:02:59] 1 tRNA-Arg [61,137] 35 (cct)
[00:02:59] 1 tRNA-Met [22,97] 34 (cat)
[00:02:59] 1 tRNA-Ser [146,2] 37 (cga)
[00:02:59] tRNA [146,2] has start(146) > end (2) - skipping.
[00:03:00] 1 tRNA-Ser c[140,226] 35 (cag)
[00:03:00] 1 tRNA-Pro c[17,115] 38 (ggg)
[00:03:00] 1 tRNA-Arg [104,180] 35 (tct)
[00:03:02] 1 tRNA-Gln c[154,228] 33 (ttg)
[00:03:02] 1 tRNA-Arg [46,122] 35 (cct)
[00:03:02] 1 tRNA-Cys c[228,71] 35 (gca)
[00:03:02] tRNA c[228,71] has start(228) > end (71) - skipping.
[00:03:02] 1 tRNA-Arg [24,98] 35 (tcg)
[00:03:03] 1 tRNA-seC c[44,130] 37 (tca)
[00:03:03] 1 tRNA-Leu [218,74] 34 (taa)
[00:03:03] tRNA [218,74] has start(218) > end (74) - skipping.
[00:03:03] 1 tRNA-Met c[151,225] 33 (cat)
[00:03:03] 1 tRNA-Tyr [52,139] 28 (gta)
[00:03:04] 1 tRNA-Thr [35,110] 34 (cgt)
[00:03:04] 1 tRNA-Met [24,100] 35 (cat)
[00:03:04] 1 tRNA-His [22,96] 33 (gtg)
[00:03:05] 1 tRNA-Arg [53,129] 35 (gcg)
[00:03:06] 1 tRNA-Asp c[118,196] 37 (gtc)
[00:03:06] 1 tRNA-Ala c[151,226] 34 (tgc)
[00:03:06] 1 tRNA-Ser c[76,162] 35 (cag)
[00:03:07] 1 tRNA-Gln [36,109] 33 (ttg)
[00:03:07] 1 tRNA-Gly c[49,120] 33 (tcc)
[00:03:08] 1 tRNA-Ser c[38,124] 35 (cag)
[00:03:09] 1 tRNA-Ser c[57,147] 35 (gct)
[00:03:09] 1 tRNA-Pro c[30,106] 35 (ggg)
[00:03:09] 1 tRNA-Ala [20,94] 35 (ggc)
[00:03:09] 1 tRNA-Ser c[121,206] 27 (gct)
[00:03:09] 1 tRNA-Phe [144,219] 34 (gaa)
[00:03:09] 1 tRNA-Gln [69,144] 36 (ttg)
[00:03:09] 1 tRNA-Glu [136,208] 33 (ctc)
[00:03:09] 1 tRNA-Ala [25,100] 34 (ggc)
[00:03:09] 1 tRNA-Val c[79,153] 33 (cac)
[00:03:09] 1 tRNA-Ser c[58,142] 35 (cag)
[00:03:10] 1 tRNA-Glu [2,67] 28 (ctc)
[00:03:10] 1 tRNA-Ser [126,216] 35 (gga)
[00:03:11] 1 tRNA-Gly c[51,124] 33 (ccc)
[00:03:11] 1 tRNA-Gln c[45,118] 34 (ctg)
[00:03:12] 1 tRNA-Gln c[82,155] 34 (ttg)
[00:03:12] 1 tRNA-Ser c[24,112] 35 (cga)
[00:03:12] 1 tRNA-Ala [43,118] 34 (cgc)
[00:03:12] 1 tRNA-Ala [16,91] 34 (cgc)
[00:03:12] 1 tRNA-Gln [159,2] 33 (ctg)
[00:03:12] tRNA [159,2] has start(159) > end (2) - skipping.
[00:03:12] 1 tRNA-Leu [129,212] 35 (tag)
[00:03:12] 1 tRNA-Leu [52,138] 35 (taa)
[00:03:12] 1 tRNA-Gly [105,177] 33 (gcc)
[00:03:12] 1 tRNA-Ser c[122,205] 34 (cag)
[00:03:12] 1 tRNA-Cys c[190,43] 40 (aca)
[00:03:12] tRNA c[190,43] has start(190) > end (43) - skipping.
[00:03:13] 1 tRNA-Thr [2,73] 33 (cgt)
[00:03:13] 1 tRNA-Met c[60,134] 35 (cat)
[00:03:13] 1 tRNA-Glu [59,133] 34 (ttc)
[00:03:13] 2 tRNA-Glu [160,6] 36 (ctc)
[00:03:13] tRNA [160,6] has start(160) > end (6) - skipping.
[00:03:13] 1 tRNA-Phe c[58,133] 34 (gaa)
[00:03:13] 1 tRNA-Gln c[136,209] 33 (ctg)
[00:03:14] 1 tRNA-Arg c[133,209] 35 (ccg)
[00:03:14] 1 tRNA-Gln [31,103] 33 (ttg)
[00:03:14] 1 tRNA-seC c[77,174] 35 (tca)
[00:03:14] 1 tRNA-Leu c[143,226] 34 (caa)
[00:03:14] 1 tRNA-Pro [154,6] 38 (cgg)
[00:03:14] tRNA [154,6] has start(154) > end (6) - skipping.
[00:03:16] 1 tRNA-Met [77,153] 35 (cat)
[00:03:16] 1 tRNA-Gly [72,145] 33 (tcc)
[00:03:16] 1 tRNA-His c[51,125] 35 (gtg)
[00:03:16] 1 tRNA-Thr [48,122] 33 (cgt)
[00:03:16] 1 tRNA-Tyr [72,158] 35 (gta)
[00:03:16] 1 tRNA-Ser c[138,4] 36 (gga)
[00:03:16] tRNA c[138,4] has start(138) > end (4) - skipping.
[00:03:17] 1 tRNA-seC c[101,194] 36 (tca)
[00:03:17] 1 tRNA-Gln [106,179] 34 (ctg)
[00:03:18] 1 tRNA-Gly [178,43] 36 (gcc)
[00:03:18] tRNA [178,43] has start(178) > end (43) - skipping.
[00:03:18] 1 tRNA-Pro c[129,205] 35 (ggg)
[00:03:18] 1 tRNA-Lys [23,98] 34 (ttt)
[00:03:18] 1 tRNA-Glu c[74,155] 31 (ctc)
[00:03:18] 1 tRNA-Gln [67,143] 35 (ttg)
[00:03:18] 1 tRNA-Gly c[71,144] 34 (gcc)
[00:03:18] 1 tRNA-Gly c[12,85] 33 (ccc)
[00:03:18] 1 tRNA-Tyr [108,194] 36 (gta)
[00:03:18] 1 tRNA-Arg c[118,199] 36 (gcg)
[00:03:19] 1 tRNA-Ser [112,198] 35 (cga)
[00:03:19] 1 tRNA-Leu [50,136] 35 (gag)
[00:03:19] 1 tRNA-Gly c[34,123] 29 (gcc)
[00:03:19] 1 tRNA-Val c[218,69] 36 (gac)
[00:03:19] tRNA c[218,69] has start(218) > end (69) - skipping.
[00:03:19] 1 tRNA-Arg c[151,4] 36 (tct)
[00:03:19] tRNA c[151,4] has start(151) > end (4) - skipping.
[00:03:21] 1 tRNA-Met [86,160] 36 (cat)
[00:03:22] 1 tRNA-Lys c[41,116] 34 (ctt)
[00:03:22] 1 tRNA-Asn c[64,140] 34 (gtt)
[00:03:22] 1 tRNA-seC [111,204] 36 (tca)
[00:03:23] 1 tRNA-Arg c[86,164] 32 (gcg)
[00:03:23] 1 tRNA-Glu [52,126] 34 (ctc)
[00:03:23] 1 tRNA-Gly [25,98] 33 (ccc)
[00:03:23] 1 tRNA-Phe [90,163] 34 (gaa)
[00:03:24] 1 tRNA-Ile c[16,93] 36 (gat)
[00:03:24] 1 tRNA-Leu [129,216] 35 (caa)
[00:03:24] 1 tRNA-Lys c[117,190] 34 (ctt)
[00:03:24] 1 tRNA-Val [152,3] 35 (tac)
[00:03:24] tRNA [152,3] has start(152) > end (3) - skipping.
[00:03:26] 1 tRNA-Met c[79,155] 35 (cat)
[00:03:26] 1 tRNA-Gly [211,64] 34 (tcc)
[00:03:26] tRNA [211,64] has start(211) > end (64) - skipping.
[00:03:26] 1 tRNA-Leu [216,75] 34 (taa)
[00:03:26] tRNA [216,75] has start(216) > end (75) - skipping.
[00:03:26] 1 tRNA-Val [37,111] 33 (gac)
[00:03:26] 1 tRNA-Tyr c[211,72] 36 (gta)
[00:03:26] tRNA c[211,72] has start(211) > end (72) - skipping.
[00:03:26] 1 tRNA-Ser c[34,125] 36 (cga)
[00:03:27] 1 tRNA-Gly [87,160] 34 (gcc)
[00:03:27] 1 tRNA-Arg c[45,118] 35 (tcg)
[00:03:27] 1 tRNA-Ser c[210,76] 36 (tga)
[00:03:27] tRNA c[210,76] has start(210) > end (76) - skipping.
[00:03:27] 1 tRNA-Arg c[63,138] 34 (gcg)
[00:03:28] 1 tRNA-Arg c[69,146] 37 (tct)
[00:03:28] 1 tRNA-Arg c[48,123] 36 (tcg)
[00:03:28] 1 tRNA-Glu [146,221] 35 (ctc)
[00:03:28] 1 tRNA-Ala c[84,164] 33 (ggc)
[00:03:29] 1 tRNA-Pro [87,161] 35 (ggg)
[00:03:29] 1 tRNA-Gln c[90,165] 34 (ttg)
[00:03:29] 1 tRNA-Pro c[85,172] 30 (agg)
[00:03:29] 1 tRNA-Pro [25,101] 37 (cgg)
[00:03:29] 1 tRNA-Ser c[34,124] 35 (gga)
[00:03:29] 1 tRNA-Lys c[56,128] 34 (ttt)
[00:03:29] 1 tRNA-Thr c[50,122] 33 (ggt)
[00:03:29] 1 tRNA-Leu c[38,122] 35 (tag)
[00:03:30] 1 tRNA-Met c[152,6] 35 (cat)
[00:03:30] tRNA c[152,6] has start(152) > end (6) - skipping.
[00:03:31] 1 tRNA-Thr c[167,37] 34 (cgt)
[00:03:31] tRNA c[167,37] has start(167) > end (37) - skipping.
[00:03:32] 1 tRNA-Leu c[61,146] 36 (tag)
[00:03:32] 1 tRNA-Asn c[68,143] 34 (gtt)
[00:03:32] 1 tRNA-Thr [31,105] 34 (tgt)
[00:03:32] 1 tRNA-Arg [130,10] 40 (acg)
[00:03:32] tRNA [130,10] has start(130) > end (10) - skipping.
[00:03:32] 1 tRNA-Leu [51,128] 35 (taa)
[00:03:32] 1 tRNA-Pro c[31,107] 35 (tgg)
[00:03:33] 1 tRNA-Met [113,187] 33 (cat)
[00:03:33] 1 tRNA-Ser [61,147] 35 (cag)
[00:03:34] 1 tRNA-Asn [65,139] 35 (gtt)
[00:03:34] 1 tRNA-Cys c[38,111] 33 (gca)
[00:03:35] 1 tRNA-Tyr [58,144] 35 (gta)
[00:03:35] 1 tRNA-Ala c[217,71] 34 (tgc)
[00:03:35] tRNA c[217,71] has start(217) > end (71) - skipping.
[00:03:36] 1 tRNA-Gly c[9,83] 33 (gcc)
[00:03:36] 1 tRNA-Thr c[19,93] 33 (tgt)
[00:03:36] 1 tRNA-Asn [111,184] 34 (gtt)
[00:03:36] 1 tRNA-Met c[218,72] 34 (cat)
[00:03:36] tRNA c[218,72] has start(218) > end (72) - skipping.
[00:03:36] 1 tRNA-Gly c[193,72] 35 (acc)
[00:03:36] tRNA c[193,72] has start(193) > end (72) - skipping.
[00:03:37] 1 tRNA-Glu [146,4] 36 (ctc)
[00:03:37] tRNA [146,4] has start(146) > end (4) - skipping.
[00:03:37] 1 tRNA-Tyr c[9,94] 35 (gta)
[00:03:37] 1 tRNA-Gly [25,99] 33 (gcc)
[00:03:37] 1 tRNA-Met [68,144] 35 (cat)
[00:03:37] 1 tRNA-Ser c[125,212] 35 (tga)
[00:03:39] 1 tRNA-Leu [123,209] 35 (gag)
[00:03:39] 1 tRNA-Thr c[147,13] 30 (ggt)
[00:03:39] tRNA c[147,13] has start(147) > end (13) - skipping.
[00:03:40] 1 tRNA-Leu c[141,7] 36 (caa)
[00:03:40] tRNA c[141,7] has start(141) > end (7) - skipping.
[00:03:40] 1 tRNA-Leu [114,198] 35 (gag)
[00:03:40] 1 tRNA-Ser [99,187] 36 (cga)
[00:03:40] 1 tRNA-Thr [86,159] 34 (cgt)
[00:03:40] 1 tRNA-Ala [100,192] 33 (ggc)
[00:03:40] 1 tRNA-Pro [82,157] 36 (tgg)
[00:03:41] 1 tRNA-Met [146,215] 30 (cat)
[00:03:41] 1 tRNA-Val [147,3] 34 (tac)
[00:03:41] tRNA [147,3] has start(147) > end (3) - skipping.
[00:03:42] 1 tRNA-Arg c[7,83] 35 (acg)
[00:03:42] 1 tRNA-Leu c[1,87] 35 (taa)
[00:03:42] 1 tRNA-Thr [121,196] 34 (cgt)
[00:03:42] 1 tRNA-Arg [148,17] 36 (cct)
[00:03:42] tRNA [148,17] has start(148) > end (17) - skipping.
[00:03:43] 1 tRNA-His [137,211] 35 (gtg)
[00:03:43] 1 tRNA-Tyr c[47,132] 35 (gta)
[00:03:43] 1 tRNA-Thr [68,142] 33 (ggt)
[00:03:43] 1 tRNA-Gly c[46,120] 33 (gcc)
[00:03:43] 1 tRNA-Gln c[97,170] 33 (ctg)
[00:03:43] 1 tRNA-Val [33,108] 34 (gac)
[00:03:43] 1 tRNA-Arg c[32,107] 34 (tct)
[00:03:43] 1 tRNA-Ala c[71,146] 34 (ggc)
[00:03:43] 1 tRNA-Ala [68,141] 34 (tgc)
[00:03:44] 1 tRNA-Leu c[97,183] 35 (taa)
[00:03:44] 1 tRNA-Lys [130,203] 34 (ctt)
[00:03:45] 1 tRNA-Lys [124,198] 34 (ttt)
[00:03:45] 1 tRNA-Ala c[56,131] 38 (ggc)
[00:03:46] 1 tRNA-Asn [71,160] 35 (gtt)
[00:03:46] 1 tRNA-Ser [58,147] 35 (cga)
[00:03:46] 1 tRNA-seC [83,174] 35 (tca)
[00:03:46] 1 tRNA-Lys [86,161] 34 (ttt)
[00:03:47] 1 tRNA-Thr c[103,178] 34 (cgt)
[00:03:47] 1 tRNA-Glu c[87,161] 34 (ctc)
[00:03:47] 1 tRNA-Arg [172,55] 36 (gcg)
[00:03:47] tRNA [172,55] has start(172) > end (55) - skipping.
[00:03:48] 1 tRNA-Trp [24,99] 34 (cca)
[00:03:48] 1 tRNA-Ile [161,39] 36 (gat)
[00:03:48] tRNA [161,39] has start(161) > end (39) - skipping.
[00:03:49] 1 tRNA-Ser [70,157] 35 (tga)
[00:03:49] 1 tRNA-Met [15,91] 35 (cat)
[00:03:49] 1 tRNA-Thr [117,192] 34 (tgt)
[00:03:50] 1 tRNA-Gln [11,106] 36 (ctg)
[00:03:50] 1 tRNA-Ser [91,164] 34 (gct)
[00:03:51] 1 tRNA-Ser [13,97] 35 (cag)
[00:03:51] 1 tRNA-Ser c[127,3] 35 (tga)
[00:03:51] tRNA c[127,3] has start(127) > end (3) - skipping.
[00:03:51] 1 tRNA-Gly c[200,87] 39 (acc)
[00:03:51] tRNA c[200,87] has start(200) > end (87) - skipping.
[00:03:52] 1 tRNA-Asn c[12,86] 33 (gtt)
[00:03:52] 1 tRNA-Trp c[211,76] 40 (cca)
[00:03:52] tRNA c[211,76] has start(211) > end (76) - skipping.
[00:03:52] 1 tRNA-Gly c[33,107] 33 (gcc)
[00:03:52] 1 tRNA-Pro c[133,209] 35 (cgg)
[00:03:52] 1 tRNA-Arg [88,161] 35 (cct)
[00:03:52] 1 tRNA-Cys [105,178] 33 (gca)
[00:03:52] 1 tRNA-Ile [105,181] 35 (gat)
[00:03:53] 1 tRNA-Asp c[114,206] 34 (gtc)
[00:03:53] 1 tRNA-Asp [44,138] 39 (gtc)
[00:03:53] 1 tRNA-Ala [124,199] 34 (cgc)
[00:03:54] 1 tRNA-Thr [6,95] 33 (ggt)
[00:03:54] 1 tRNA-Arg [101,177] 35 (tcg)
[00:03:55] 1 tRNA-Glu [61,150] 35 (ttc)
[00:03:55] 1 tRNA-Lys [42,116] 34 (ttt)
[00:03:55] 2 tRNA-Glu [130,202] 34 (ttc)
[00:03:55] 1 tRNA-Trp c[83,158] 34 (cca)
[00:03:55] 1 tRNA-Pro c[111,184] 35 (ggg)
[00:03:55] 1 tRNA-Ala [77,152] 34 (tgc)
[00:03:55] 1 tRNA-Phe c[116,189] 34 (gaa)
[00:03:56] 1 tRNA-Ala [5,80] 34 (cgc)
[00:03:57] 1 tRNA-Ser c[144,25] 35 (gga)
[00:03:57] tRNA c[144,25] has start(144) > end (25) - skipping.
[00:03:57] 1 tRNA-Arg c[67,143] 35 (ccg)
[00:03:57] 1 tRNA-Leu [126,8] 36 (gag)
[00:03:57] tRNA [126,8] has start(126) > end (8) - skipping.
[00:03:57] 1 tRNA-Cys c[65,136] 33 (gca)
[00:03:59] 1 tRNA-Asn [35,109] 33 (gtt)
[00:03:59] 1 tRNA-Thr [57,129] 34 (cgt)
[00:04:00] 1 tRNA-seC c[16,107] 35 (tca)
[00:04:00] 1 tRNA-Pro c[37,111] 36 (tgg)
[00:04:01] 1 tRNA-Leu c[4,88] 35 (gag)
[00:04:01] 1 tRNA-Tyr c[56,139] 35 (gta)
[00:04:01] 1 tRNA-Ala [20,95] 34 (cgc)
[00:04:02] 1 tRNA-Arg c[93,166] 36 (acg)
[00:04:02] 1 tRNA-Ser [50,136] 35 (cag)
[00:04:02] 1 tRNA-Leu c[56,137] 35 (gag)
[00:04:02] 1 tRNA-Gln c[55,128] 33 (ttg)
[00:04:02] 1 tRNA-Leu [33,122] 35 (taa)
[00:04:02] 1 tRNA-Arg [130,206] 35 (ccg)
[00:04:03] 1 tRNA-Ser c[137,14] 32 (tga)
[00:04:03] tRNA c[137,14] has start(137) > end (14) - skipping.
[00:04:03] 1 tRNA-Asp [68,142] 35 (gtc)
[00:04:03] 1 tRNA-Leu c[97,184] 35 (caa)
[00:04:04] 1 tRNA-Lys c[55,129] 35 (ctt)
[00:04:04] 1 tRNA-Gln [2,72] 33 (ctg)
[00:04:05] 1 tRNA-Ser c[69,158] 35 (cga)
[00:04:05] 1 tRNA-Lys c[107,179] 34 (ttt)
[00:04:05] 1 tRNA-Gly [67,140] 33 (tcc)
[00:04:05] 1 tRNA-Asp c[122,197] 36 (gtc)
[00:04:05] 1 tRNA-Leu c[111,192] 35 (tag)
[00:04:05] 1 tRNA-Thr [23,97] 33 (ggt)
[00:04:05] 1 tRNA-Ala c[82,157] 34 (tgc)
[00:04:05] 1 tRNA-Val c[93,184] 38 (gac)
[00:04:06] 1 tRNA-His [16,111] 35 (gtg)
[00:04:06] 1 tRNA-??? [52,125] 34 (cc)
[00:04:06] 1 tRNA-Arg [23,99] 35 (cct)
[00:04:07] 1 tRNA-Ala [16,91] 34 (tgc)
[00:04:07] 1 tRNA-Ser [128,11] 35 (gga)
[00:04:07] tRNA [128,11] has start(128) > end (11) - skipping.
[00:04:08] 1 tRNA-Ser c[9,91] 33 (cga)
[00:04:08] 1 tRNA-Leu c[72,159] 35 (gag)
[00:04:08] 1 tRNA-Gln c[128,204] 35 (ttg)
[00:04:08] 1 tRNA-Pro c[73,149] 35 (ggg)
[00:04:08] 1 tRNA-Gln c[39,112] 34 (ctg)
[00:04:09] 1 tRNA-Asn c[85,159] 33 (gtt)
[00:04:09] 1 tRNA-His c[129,4] 34 (atg)
[00:04:09] tRNA c[129,4] has start(129) > end (4) - skipping.
[00:04:10] 1 tRNA-Ala [195,59] 33 (ggc)
[00:04:10] tRNA [195,59] has start(195) > end (59) - skipping.
[00:04:10] 1 tRNA-seC [19,113] 35 (tca)
[00:04:11] 1 tRNA-Ser c[174,62] 36 (cga)
[00:04:11] tRNA c[174,62] has start(174) > end (62) - skipping.
[00:04:11] 1 tRNA-Ser [170,36] 32 (cga)
[00:04:11] tRNA [170,36] has start(170) > end (36) - skipping.
[00:04:12] 1 tRNA-Lys c[205,69] 33 (ttt)
[00:04:12] tRNA c[205,69] has start(205) > end (69) - skipping.
[00:04:12] 1 tRNA-Gly c[198,61] 33 (gcc)
[00:04:12] tRNA c[198,61] has start(198) > end (61) - skipping.
[00:04:12] 2 tRNA-His c[65,140] 34 (gtg)
[00:04:12] 1 tRNA-Arg c[8,81] 35 (acg)
[00:04:12] 1 tRNA-Phe [20,95] 34 (gaa)
[00:04:12] Found 628 tRNAs
[00:04:12] Predicting Ribosomal RNAs
[00:04:12] Running RNAmmer
[00:04:12] Running: rnammer -S bac -multi -xml REGE2\/rnammer\.xml REGE2\/prefix\.fna
[20:08:59] 1	5S ribosomal RNA	gnl|goettingen|locustag_contig192840	2	106	+
[20:08:59] 2	5S ribosomal RNA	gnl|goettingen|locustag_contig011016	23	138	-
[20:08:59] 3	5S ribosomal RNA	gnl|goettingen|locustag_contig063267	8	123	-
[20:08:59] 4	5S ribosomal RNA	gnl|goettingen|locustag_contig152789	67	179	-
[20:08:59] 5	5S ribosomal RNA	gnl|goettingen|locustag_contig147068	43	157	+
[20:08:59] 6	5S ribosomal RNA	gnl|goettingen|locustag_contig042772	118	232	-
[20:08:59] 7	5S ribosomal RNA	gnl|goettingen|locustag_contig271249	104	218	-
[20:08:59] 8	5S ribosomal RNA	gnl|goettingen|locustag_contig039791	171	287	-
[20:08:59] 9	5S ribosomal RNA	gnl|goettingen|locustag_contig306706	122	215	+
[20:08:59] 10	5S ribosomal RNA	gnl|goettingen|locustag_contig060051	175	274	-
[20:08:59] 11	5S ribosomal RNA	gnl|goettingen|locustag_contig027214	78	191	-
[20:08:59] 12	5S ribosomal RNA	gnl|goettingen|locustag_contig016434	187	301	-
[20:08:59] 13	5S ribosomal RNA	gnl|goettingen|locustag_contig110343	80	192	+
[20:08:59] 14	5S ribosomal RNA	gnl|goettingen|locustag_contig093524	101	218	-
[20:08:59] 15	5S ribosomal RNA	gnl|goettingen|locustag_contig015841	77	189	-
[20:08:59] 16	5S ribosomal RNA	gnl|goettingen|locustag_contig079093	142	255	-
[20:08:59] 17	5S ribosomal RNA	gnl|goettingen|locustag_contig276715	2	104	-
[20:08:59] Deleting unwanted file: REGE2/rnammer.xml
[20:08:59] Found 17 rRNAs
[20:08:59] Scanning for ncRNAs... please be patient.
[20:08:59] Running: cmscan --cpu 8 -E 1e-06 --tblout /dev/stdout -o /dev/null --noali /opt/tools/prokka/bin/../db/cm/Bacteria REGE2\/prefix\.fna
[03:58:44] 1 ncRNA TPP gnl|goettingen|locustag_contig000312 95..194
[03:58:44] 2 ncRNA Xoo8 gnl|goettingen|locustag_contig000408 1..49
[03:58:44] 3 ncRNA cspA gnl|goettingen|locustag_contig000628 314..687
[03:58:44] 4 ncRNA cspA gnl|goettingen|locustag_contig000991 233..1
[03:58:44] 5 ncRNA mraW gnl|goettingen|locustag_contig001505 494..595
[03:58:44] 6 ncRNA SAM_alpha gnl|goettingen|locustag_contig002238 92..15
[03:58:44] 7 ncRNA cspA gnl|goettingen|locustag_contig002426 1..347
[03:58:44] 8 ncRNA mraW gnl|goettingen|locustag_contig002687 93..1
[03:58:44] 9 ncRNA cspA gnl|goettingen|locustag_contig003285 488..64
[03:58:44] 10 ncRNA SAM_alpha gnl|goettingen|locustag_contig003654 274..196
[03:58:44] 11 ncRNA P37 gnl|goettingen|locustag_contig004717 411..470
[03:58:44] 12 ncRNA Betaproteobacteria_toxic_sRNA gnl|goettingen|locustag_contig005215 310..248
[03:58:44] 13 ncRNA SAM-I-IV-variant gnl|goettingen|locustag_contig005909 308..202
[03:58:44] 14 ncRNA mraW gnl|goettingen|locustag_contig006491 369..437
[03:58:44] 15 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig008503 117..1
[03:58:44] 16 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig008603 410..337
[03:58:44] 17 ncRNA SAM_alpha gnl|goettingen|locustag_contig008640 205..130
[03:58:44] 18 ncRNA ROSE gnl|goettingen|locustag_contig010004 187..286
[03:58:44] 19 ncRNA cspA gnl|goettingen|locustag_contig010118 1..292
[03:58:44] 20 ncRNA cspA gnl|goettingen|locustag_contig010140 1..299
[03:58:44] 21 ncRNA yybP-ykoY gnl|goettingen|locustag_contig010629 372..233
[03:58:44] 22 ncRNA cspA gnl|goettingen|locustag_contig011216 1..241
[12:08:46] 23 ncRNA Alpha_RBS gnl|goettingen|locustag_contig012329 115..159
[12:08:46] 24 ncRNA Cobalamin gnl|goettingen|locustag_contig012455 1..115
[12:08:46] 25 ncRNA TPP gnl|goettingen|locustag_contig012899 140..34
[12:08:46] 26 ncRNA yybP-ykoY gnl|goettingen|locustag_contig013019 63..199
[12:08:46] 27 ncRNA SAM_alpha gnl|goettingen|locustag_contig013151 153..77
[12:08:46] 28 ncRNA Cobalamin gnl|goettingen|locustag_contig013333 224..45
[12:08:46] 29 ncRNA yybP-ykoY gnl|goettingen|locustag_contig013392 1..78
[12:08:46] 30 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig014184 351..253
[12:08:46] 31 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig014184 352..255
[12:08:46] 32 ncRNA cspA gnl|goettingen|locustag_contig014717 49..363
[12:08:46] 33 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig014830 258..1
[12:08:46] 34 ncRNA TPP gnl|goettingen|locustag_contig015140 219..309
[12:08:46] 35 ncRNA SAH_riboswitch gnl|goettingen|locustag_contig017300 351..273
[12:08:46] 36 ncRNA F6 gnl|goettingen|locustag_contig017545 289..340
[12:08:46] 37 ncRNA FMN gnl|goettingen|locustag_contig019036 331..172
[12:08:46] 38 ncRNA suhB gnl|goettingen|locustag_contig020089 199..275
[12:08:46] 39 ncRNA SAH_riboswitch gnl|goettingen|locustag_contig020881 104..177
[12:08:46] 40 ncRNA mir-598 gnl|goettingen|locustag_contig021065 309..218
[12:08:46] 41 ncRNA mir-598 gnl|goettingen|locustag_contig021065 212..312
[12:08:46] 42 ncRNA Intron_gpII gnl|goettingen|locustag_contig021531 228..154
[12:08:46] 43 ncRNA 6S gnl|goettingen|locustag_contig023342 115..1
[12:08:46] 44 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig023879 155..1
[12:08:46] 45 ncRNA Archaea_SRP gnl|goettingen|locustag_contig025364 1..119
[12:08:46] 46 ncRNA CRISPR-DR16 gnl|goettingen|locustag_contig026155 43..78
[18:19:40] 47 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig026646 146..188
[18:19:40] 48 ncRNA Archaea_SRP gnl|goettingen|locustag_contig026646 146..188
[18:19:40] 49 ncRNA cspA gnl|goettingen|locustag_contig026980 319..22
[18:19:40] 50 ncRNA cspA gnl|goettingen|locustag_contig027538 159..1
[18:19:40] 51 ncRNA cspA gnl|goettingen|locustag_contig027851 1..174
[18:19:40] 52 ncRNA isrG gnl|goettingen|locustag_contig029950 312..165
[18:19:40] 53 ncRNA isrG gnl|goettingen|locustag_contig029950 138..312
[18:19:40] 54 ncRNA Cobalamin gnl|goettingen|locustag_contig031287 309..161
[18:19:40] 55 ncRNA P17 gnl|goettingen|locustag_contig032103 107..146
[18:19:40] 56 ncRNA P17 gnl|goettingen|locustag_contig032103 152..116
[18:19:40] 57 ncRNA T-box gnl|goettingen|locustag_contig033025 1..148
[18:19:40] 58 ncRNA F6 gnl|goettingen|locustag_contig033431 238..293
[18:19:40] 59 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig033533 198..296
[18:19:40] 60 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig033533 198..293
[18:19:40] 61 ncRNA Archaea_SRP gnl|goettingen|locustag_contig033533 222..262
[18:19:40] 62 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig033957 89..186
[18:19:40] 63 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig033957 89..183
[18:19:40] 64 ncRNA mir-328 gnl|goettingen|locustag_contig034439 254..175
[18:19:40] 65 ncRNA mir-328 gnl|goettingen|locustag_contig034439 186..265
[18:19:40] 66 ncRNA yybP-ykoY gnl|goettingen|locustag_contig035099 192..302
[18:19:40] 67 ncRNA cspA gnl|goettingen|locustag_contig035804 1..255
[18:19:40] 68 ncRNA Cobalamin gnl|goettingen|locustag_contig036419 1..87
[18:19:40] 69 ncRNA mir-598 gnl|goettingen|locustag_contig036699 197..289
[18:19:40] 70 ncRNA mir-598 gnl|goettingen|locustag_contig036699 289..197
[18:19:40] 71 ncRNA TPP gnl|goettingen|locustag_contig037319 63..162
[00:49:37] 72 ncRNA Xoo8 gnl|goettingen|locustag_contig038033 297..143
[00:49:37] 73 ncRNA ydaO-yuaA gnl|goettingen|locustag_contig039794 18..169
[00:49:37] 74 ncRNA TPP gnl|goettingen|locustag_contig040905 1..89
[00:49:37] 75 ncRNA suhB gnl|goettingen|locustag_contig040942 1..65
[00:49:37] 76 ncRNA mir-1265 gnl|goettingen|locustag_contig041051 89..1
[00:49:37] 77 ncRNA ALIL gnl|goettingen|locustag_contig041191 212..292
[00:49:37] 78 ncRNA 6S gnl|goettingen|locustag_contig041388 206..291
[00:49:37] 79 ncRNA mraW gnl|goettingen|locustag_contig041389 291..206
[00:49:37] 80 ncRNA SAH_riboswitch gnl|goettingen|locustag_contig041870 151..232
[00:49:37] 81 ncRNA t44 gnl|goettingen|locustag_contig042125 131..241
[00:49:37] 82 ncRNA SAM_alpha gnl|goettingen|locustag_contig042549 137..63
[00:49:37] 83 ncRNA Cobalamin gnl|goettingen|locustag_contig042576 1..97
[00:49:37] 84 ncRNA yybP-ykoY gnl|goettingen|locustag_contig043308 200..72
[00:49:37] 85 ncRNA STnc400 gnl|goettingen|locustag_contig043421 225..289
[00:49:37] 86 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig043539 232..134
[00:49:37] 87 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig043539 232..137
[00:49:37] 88 ncRNA mraW gnl|goettingen|locustag_contig043913 287..175
[00:49:37] 89 ncRNA yybP-ykoY gnl|goettingen|locustag_contig044698 222..95
[00:49:37] 90 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig045912 156..286
[00:49:37] 91 ncRNA T-box gnl|goettingen|locustag_contig046739 1..98
[00:49:37] 92 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig046895 111..284
[00:49:37] 93 ncRNA TPP gnl|goettingen|locustag_contig046912 45..143
[00:49:37] 94 ncRNA cspA gnl|goettingen|locustag_contig046939 285..152
[00:49:37] 95 ncRNA 6S gnl|goettingen|locustag_contig049365 282..121
[14:18:37] 96 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig050012 139..281
[14:18:37] 97 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig053481 41..279
[14:18:37] 98 ncRNA isrG gnl|goettingen|locustag_contig053882 278..81
[14:18:37] 99 ncRNA ALIL gnl|goettingen|locustag_contig053894 217..278
[14:18:37] 100 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig054428 276..128
[14:18:37] 101 ncRNA group-II-D1D4-1 gnl|goettingen|locustag_contig054428 107..32
[14:18:37] 102 ncRNA cspA gnl|goettingen|locustag_contig055482 1..203
[14:18:37] 103 ncRNA mir-598 gnl|goettingen|locustag_contig056922 269..184
[14:18:37] 104 ncRNA mir-598 gnl|goettingen|locustag_contig056922 186..273
[14:18:37] 105 ncRNA yybP-ykoY gnl|goettingen|locustag_contig058613 91..5
[14:18:37] 106 ncRNA Flavo-1 gnl|goettingen|locustag_contig063993 166..11
[14:18:37] 107 ncRNA c-di-GMP-I gnl|goettingen|locustag_contig064422 179..262
[14:18:37] 108 ncRNA ffh gnl|goettingen|locustag_contig064864 258..207
[14:18:37] 109 ncRNA SAM_alpha gnl|goettingen|locustag_contig065037 121..48
[14:18:37] 110 ncRNA ALIL gnl|goettingen|locustag_contig065582 270..204
[14:18:37] 111 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig066826 188..138
[14:18:37] 112 ncRNA ykkC-yxkD gnl|goettingen|locustag_contig068060 143..38
[14:18:37] 113 ncRNA Intron_gpII gnl|goettingen|locustag_contig068786 183..257
[14:18:37] 114 ncRNA cspA gnl|goettingen|locustag_contig070378 1..220
[14:18:37] 115 ncRNA mir-598 gnl|goettingen|locustag_contig070421 255..148
[14:18:37] 116 ncRNA mir-328 gnl|goettingen|locustag_contig070921 135..47
[14:18:37] 117 ncRNA mir-598 gnl|goettingen|locustag_contig070921 47..145
[14:18:37] 118 ncRNA mir-598 gnl|goettingen|locustag_contig070921 147..48
[14:18:37] 119 ncRNA SAH_riboswitch gnl|goettingen|locustag_contig071185 151..49
[14:18:37] 120 ncRNA His_leader gnl|goettingen|locustag_contig073881 116..246
[22:11:03] 121 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig077315 1..131
[22:11:03] 122 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig077323 121..1
[22:11:03] 123 ncRNA cspA gnl|goettingen|locustag_contig077406 265..21
[22:11:03] 124 ncRNA Actino-pnp gnl|goettingen|locustag_contig077747 162..227
[22:11:03] 125 ncRNA Actino-pnp gnl|goettingen|locustag_contig077747 227..162
[22:11:03] 126 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig077910 165..118
[22:11:03] 127 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig078748 162..1
[22:11:03] 128 ncRNA Flavo-1 gnl|goettingen|locustag_contig079295 88..5
[22:11:03] 129 ncRNA TPP gnl|goettingen|locustag_contig080277 174..258
[22:11:03] 130 ncRNA SAM gnl|goettingen|locustag_contig082041 176..263
[22:11:03] 131 ncRNA mraW gnl|goettingen|locustag_contig082600 78..1
[22:11:03] 132 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig083610 262..194
[22:11:03] 133 ncRNA c-di-GMP-I gnl|goettingen|locustag_contig084819 134..216
[22:11:03] 134 ncRNA cspA gnl|goettingen|locustag_contig087414 261..99
[22:11:03] 135 ncRNA SAM_alpha gnl|goettingen|locustag_contig088172 232..154
[22:11:03] 136 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig088640 74..121
[22:11:03] 137 ncRNA Cobalamin gnl|goettingen|locustag_contig088647 155..6
[22:11:03] 138 ncRNA 6S gnl|goettingen|locustag_contig089535 193..9
[22:11:03] 139 ncRNA FMN gnl|goettingen|locustag_contig090297 92..1
[22:11:03] 140 ncRNA Cobalamin gnl|goettingen|locustag_contig090754 1..93
[22:11:03] 141 ncRNA Chloroflexi-1 gnl|goettingen|locustag_contig091234 88..2
[22:11:03] 142 ncRNA cspA gnl|goettingen|locustag_contig091911 1..157
[22:11:03] 143 ncRNA mir-598 gnl|goettingen|locustag_contig092711 84..10
[22:11:03] 144 ncRNA mir-598 gnl|goettingen|locustag_contig093969 163..256
[08:10:01] 145 ncRNA mir-598 gnl|goettingen|locustag_contig093969 257..167
[08:10:01] 146 ncRNA suhB gnl|goettingen|locustag_contig094419 253..178
[08:10:01] 147 ncRNA Intron_gpII gnl|goettingen|locustag_contig095966 40..111
[08:10:01] 148 ncRNA speF gnl|goettingen|locustag_contig096609 23..255
[08:10:01] 149 ncRNA cspA gnl|goettingen|locustag_contig097144 257..194
[08:10:01] 150 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig100183 81..1
[08:10:01] 151 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig100288 256..74
[08:10:01] 152 ncRNA sX15 gnl|goettingen|locustag_contig100953 256..123
[08:10:01] 153 ncRNA mir-598 gnl|goettingen|locustag_contig101444 256..186
[08:10:01] 154 ncRNA mir-598 gnl|goettingen|locustag_contig101444 186..256
[08:10:01] 155 ncRNA mir-598 gnl|goettingen|locustag_contig102026 163..255
[08:10:01] 156 ncRNA mir-598 gnl|goettingen|locustag_contig102026 254..169
[08:10:01] 157 ncRNA sX6 gnl|goettingen|locustag_contig104564 254..166
[08:10:01] 158 ncRNA TPP gnl|goettingen|locustag_contig105486 145..243
[08:10:01] 159 ncRNA Flavo-1 gnl|goettingen|locustag_contig106696 231..150
[08:10:01] 160 ncRNA yybP-ykoY gnl|goettingen|locustag_contig107858 77..181
[08:10:01] 161 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig108168 1..233
[08:10:01] 162 ncRNA yybP-ykoY gnl|goettingen|locustag_contig108181 211..76
[08:10:01] 163 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig109142 41..253
[08:10:01] 164 ncRNA mir-598 gnl|goettingen|locustag_contig111020 150..247
[08:10:01] 165 ncRNA mir-598 gnl|goettingen|locustag_contig111020 251..156
[08:10:01] 166 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig112687 75..1
[08:10:01] 167 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig113958 132..1
[08:10:01] 168 ncRNA rnk_pseudo gnl|goettingen|locustag_contig114213 172..69
[08:10:01] 169 ncRNA Glycine gnl|goettingen|locustag_contig116210 176..86
[14:03:28] 170 ncRNA STnc370 gnl|goettingen|locustag_contig117767 131..57
[14:03:28] 171 ncRNA mir-598 gnl|goettingen|locustag_contig118887 105..3
[14:03:28] 172 ncRNA mir-598 gnl|goettingen|locustag_contig118887 4..98
[14:03:28] 173 ncRNA mir-328 gnl|goettingen|locustag_contig119708 55..136
[14:03:28] 174 ncRNA mir-328 gnl|goettingen|locustag_contig119708 125..44
[14:03:28] 175 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig119899 142..250
[14:03:28] 176 ncRNA cspA gnl|goettingen|locustag_contig120352 1..224
[14:03:28] 177 ncRNA SAH_riboswitch gnl|goettingen|locustag_contig120368 182..250
[14:03:28] 178 ncRNA rimP gnl|goettingen|locustag_contig120767 111..16
[14:03:28] 179 ncRNA rimP gnl|goettingen|locustag_contig120767 22..112
[14:03:28] 180 ncRNA mir-598 gnl|goettingen|locustag_contig120915 80..2
[14:03:28] 181 ncRNA Intron_gpII gnl|goettingen|locustag_contig121170 220..145
[14:03:28] 182 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig122956 235..91
[14:03:28] 183 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig122956 210..112
[14:03:28] 184 ncRNA Archaea_SRP gnl|goettingen|locustag_contig122956 249..58
[14:03:28] 185 ncRNA Cobalamin gnl|goettingen|locustag_contig123897 55..248
[14:03:28] 186 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig125005 248..63
[14:03:28] 187 ncRNA c-di-GMP-I gnl|goettingen|locustag_contig126534 211..137
[14:03:28] 188 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig127222 41..137
[14:03:28] 189 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig127222 40..136
[14:03:28] 190 ncRNA crcB gnl|goettingen|locustag_contig127706 75..15
[14:03:28] 191 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig129417 159..205
[14:03:28] 192 ncRNA F6 gnl|goettingen|locustag_contig129906 172..230
[14:03:28] 193 ncRNA ALIL gnl|goettingen|locustag_contig130951 160..44
[23:51:16] 194 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig130981 64..247
[23:51:16] 195 ncRNA ffh gnl|goettingen|locustag_contig132454 246..209
[23:51:16] 196 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig135518 245..120
[23:51:16] 197 ncRNA SAM gnl|goettingen|locustag_contig136321 245..144
[23:51:16] 198 ncRNA mir-598 gnl|goettingen|locustag_contig136542 146..231
[23:51:16] 199 ncRNA mir-598 gnl|goettingen|locustag_contig136542 237..152
[23:51:16] 200 ncRNA mraW gnl|goettingen|locustag_contig137040 3..83
[23:51:16] 201 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig137450 85..245
[23:51:16] 202 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig138929 245..66
[23:51:16] 203 ncRNA F6 gnl|goettingen|locustag_contig139321 4..60
[23:51:16] 204 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig142257 174..128
[23:51:16] 205 ncRNA mir-598 gnl|goettingen|locustag_contig143362 1..77
[23:51:16] 206 ncRNA mir-598 gnl|goettingen|locustag_contig143362 68..3
[23:51:16] 207 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig143486 163..117
[23:51:16] 208 ncRNA suhB gnl|goettingen|locustag_contig143533 142..64
[23:51:16] 209 ncRNA P17 gnl|goettingen|locustag_contig146080 141..105
[23:51:16] 210 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig147984 178..5
[23:51:16] 211 ncRNA 6S gnl|goettingen|locustag_contig148604 1..174
[23:51:16] 212 ncRNA mir-598 gnl|goettingen|locustag_contig148677 21..83
[23:51:16] 213 ncRNA mir-598 gnl|goettingen|locustag_contig148677 83..21
[23:51:16] 214 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig149103 242..100
[23:51:16] 215 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig150079 164..118
[23:51:16] 216 ncRNA mraW gnl|goettingen|locustag_contig150234 164..242
[23:51:16] 217 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig151129 235..189
[23:51:16] 218 ncRNA SECIS_3 gnl|goettingen|locustag_contig152198 131..73
[08:42:58] 219 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig152773 162..118
[08:42:58] 220 ncRNA Intron_gpII gnl|goettingen|locustag_contig154239 144..75
[08:42:58] 221 ncRNA SAM_alpha gnl|goettingen|locustag_contig154535 19..95
[08:42:58] 222 ncRNA SAM_alpha gnl|goettingen|locustag_contig156036 241..178
[08:42:58] 223 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig157142 14..60
[08:42:58] 224 ncRNA mir-598 gnl|goettingen|locustag_contig157914 240..155
[08:42:58] 225 ncRNA mir-598 gnl|goettingen|locustag_contig157914 162..238
[08:42:58] 226 ncRNA isrG gnl|goettingen|locustag_contig157914 240..95
[08:42:58] 227 ncRNA TPP gnl|goettingen|locustag_contig159630 173..240
[08:42:58] 228 ncRNA Thr_leader gnl|goettingen|locustag_contig161429 69..161
[08:42:58] 229 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig163822 215..170
[08:42:58] 230 ncRNA mir-598 gnl|goettingen|locustag_contig165516 87..2
[08:42:58] 231 ncRNA mir-598 gnl|goettingen|locustag_contig165901 122..218
[08:42:58] 232 ncRNA mir-598 gnl|goettingen|locustag_contig165901 220..123
[08:42:58] 233 ncRNA Flavo-1 gnl|goettingen|locustag_contig166075 103..180
[08:42:58] 234 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig166101 212..168
[08:42:58] 235 ncRNA SAM_alpha gnl|goettingen|locustag_contig166757 135..58
[08:42:58] 236 ncRNA CC2171 gnl|goettingen|locustag_contig169266 28..1
[08:42:58] 237 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig170138 238..1
[08:42:58] 238 ncRNA sbcD gnl|goettingen|locustag_contig170154 1..50
[08:42:58] 239 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig170527 154..108
[08:42:58] 240 ncRNA F6 gnl|goettingen|locustag_contig170834 7..70
[08:42:58] 241 ncRNA F6 gnl|goettingen|locustag_contig170834 70..7
[08:42:58] 242 ncRNA mir-598 gnl|goettingen|locustag_contig171691 237..171
[18:22:00] 243 ncRNA PyrR gnl|goettingen|locustag_contig172153 130..11
[18:22:00] 244 ncRNA SAM_alpha gnl|goettingen|locustag_contig173859 206..129
[18:22:00] 245 ncRNA SAM_alpha gnl|goettingen|locustag_contig174851 114..189
[18:22:00] 246 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig176193 30..128
[18:22:00] 247 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig176193 13..139
[18:22:00] 248 ncRNA ykkC-III gnl|goettingen|locustag_contig176347 128..193
[18:22:00] 249 ncRNA Cobalamin gnl|goettingen|locustag_contig176818 1..147
[18:22:00] 250 ncRNA Cobalamin gnl|goettingen|locustag_contig177261 132..1
[18:22:00] 251 ncRNA mraW gnl|goettingen|locustag_contig179343 4..97
[18:22:00] 252 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig179878 44..12
[18:22:00] 253 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig179878 78..48
[18:22:00] 254 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig179878 113..83
[18:22:00] 255 ncRNA Intron_gpII gnl|goettingen|locustag_contig182859 9..76
[18:22:00] 256 ncRNA CRISPR-DR2 gnl|goettingen|locustag_contig182991 57..86
[18:22:00] 257 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig183982 185..141
[18:22:00] 258 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig184604 81..179
[18:22:00] 259 ncRNA cspA gnl|goettingen|locustag_contig185261 234..86
[18:22:00] 260 ncRNA SAM_alpha gnl|goettingen|locustag_contig186517 180..104
[18:22:00] 261 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig187685 232..187
[18:22:00] 262 ncRNA group-II-D1D4-4 gnl|goettingen|locustag_contig191378 156..233
[18:22:00] 263 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig191509 28..197
[18:22:00] 264 ncRNA mir-598 gnl|goettingen|locustag_contig192013 102..16
[18:22:00] 265 ncRNA mir-598 gnl|goettingen|locustag_contig192013 16..102
[18:22:00] 266 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig193002 131..85
[18:22:00] 267 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig193326 101..146
[02:00:45] 268 ncRNA cspA gnl|goettingen|locustag_contig193788 233..1
[02:00:45] 269 ncRNA mir-598 gnl|goettingen|locustag_contig195286 93..1
[02:00:45] 270 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig196210 181..227
[02:00:45] 271 ncRNA glmS gnl|goettingen|locustag_contig196486 232..157
[02:00:45] 272 ncRNA Cobalamin gnl|goettingen|locustag_contig196797 49..232
[02:00:45] 273 ncRNA ALIL gnl|goettingen|locustag_contig199881 83..1
[02:00:45] 274 ncRNA mir-598 gnl|goettingen|locustag_contig200589 214..125
[02:00:45] 275 ncRNA SAM_alpha gnl|goettingen|locustag_contig200663 74..151
[02:00:45] 276 ncRNA mir-328 gnl|goettingen|locustag_contig201903 84..171
[02:00:45] 277 ncRNA cspA gnl|goettingen|locustag_contig203304 1..152
[02:00:45] 278 ncRNA mraW gnl|goettingen|locustag_contig203385 120..231
[02:00:45] 279 ncRNA Cobalamin gnl|goettingen|locustag_contig203653 163..1
[02:00:45] 280 ncRNA CC3664 gnl|goettingen|locustag_contig205111 3..116
[02:00:45] 281 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig205954 121..166
[02:00:45] 282 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig205954 97..52
[02:00:45] 283 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig206955 231..32
[02:00:45] 284 ncRNA ALIL gnl|goettingen|locustag_contig207072 80..1
[02:00:45] 285 ncRNA mir-328 gnl|goettingen|locustag_contig207175 189..101
[02:00:45] 286 ncRNA TPP gnl|goettingen|locustag_contig207308 206..103
[02:00:45] 287 ncRNA mir-328 gnl|goettingen|locustag_contig208301 91..15
[02:00:45] 288 ncRNA mir-328 gnl|goettingen|locustag_contig208847 65..1
[02:00:45] 289 ncRNA CRISPR-DR16 gnl|goettingen|locustag_contig210219 4..40
[02:00:45] 290 ncRNA CRISPR-DR16 gnl|goettingen|locustag_contig210219 152..188
[02:00:45] 291 ncRNA CRISPR-DR16 gnl|goettingen|locustag_contig210219 79..115
[02:00:45] 292 ncRNA mraW gnl|goettingen|locustag_contig210474 144..227
[07:54:29] 293 ncRNA mraW gnl|goettingen|locustag_contig211911 229..136
[07:54:29] 294 ncRNA c-di-GMP-I gnl|goettingen|locustag_contig212154 127..194
[07:54:29] 295 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig213710 71..1
[07:54:29] 296 ncRNA mir-598 gnl|goettingen|locustag_contig214826 3..109
[07:54:29] 297 ncRNA mir-598 gnl|goettingen|locustag_contig214826 115..9
[07:54:29] 298 ncRNA isrG gnl|goettingen|locustag_contig214826 99..19
[07:54:29] 299 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig214972 31..76
[07:54:29] 300 ncRNA SAM-I-IV-variant gnl|goettingen|locustag_contig216419 177..69
[07:54:29] 301 ncRNA mir-598 gnl|goettingen|locustag_contig217014 94..1
[07:54:29] 302 ncRNA Cobalamin gnl|goettingen|locustag_contig217420 24..214
[07:54:29] 303 ncRNA cspA gnl|goettingen|locustag_contig218359 229..106
[07:54:29] 304 ncRNA cspA gnl|goettingen|locustag_contig218649 229..1
[07:54:29] 305 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig218740 17..229
[07:54:29] 306 ncRNA group-II-D1D4-4 gnl|goettingen|locustag_contig219020 228..147
[07:54:29] 307 ncRNA SAM_alpha gnl|goettingen|locustag_contig219969 61..1
[07:54:29] 308 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig220205 88..228
[07:54:29] 309 ncRNA CRISPR-DR2 gnl|goettingen|locustag_contig220598 52..23
[07:54:29] 310 ncRNA CRISPR-DR2 gnl|goettingen|locustag_contig220598 120..91
[07:54:29] 311 ncRNA CRISPR-DR2 gnl|goettingen|locustag_contig220598 189..160
[07:54:29] 312 ncRNA SAM gnl|goettingen|locustag_contig222563 98..1
[07:54:29] 313 ncRNA mir-328 gnl|goettingen|locustag_contig223339 139..218
[07:54:29] 314 ncRNA mir-1265 gnl|goettingen|locustag_contig225051 146..227
[07:54:29] 315 ncRNA CRISPR-DR9 gnl|goettingen|locustag_contig225829 6..42
[07:54:29] 316 ncRNA CRISPR-DR9 gnl|goettingen|locustag_contig225829 77..113
[16:58:19] 317 ncRNA CRISPR-DR9 gnl|goettingen|locustag_contig225829 150..186
[16:58:19] 318 ncRNA mir-598 gnl|goettingen|locustag_contig226313 104..6
[16:58:19] 319 ncRNA mir-598 gnl|goettingen|locustag_contig226313 6..92
[16:58:19] 320 ncRNA SAM_alpha gnl|goettingen|locustag_contig227535 57..134
[16:58:19] 321 ncRNA suhB gnl|goettingen|locustag_contig228475 184..111
[16:58:19] 322 ncRNA yybP-ykoY gnl|goettingen|locustag_contig229793 210..101
[16:58:19] 323 ncRNA Phe_leader gnl|goettingen|locustag_contig229956 225..123
[16:58:19] 324 ncRNA ALIL gnl|goettingen|locustag_contig230190 227..188
[16:58:19] 325 ncRNA mraW gnl|goettingen|locustag_contig230896 164..60
[16:58:19] 326 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig230960 166..121
[16:58:19] 327 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig236943 204..108
[16:58:19] 328 ncRNA mraW gnl|goettingen|locustag_contig239179 134..224
[16:58:19] 329 ncRNA mraW gnl|goettingen|locustag_contig239179 221..133
[16:58:19] 330 ncRNA cspA gnl|goettingen|locustag_contig239523 1..183
[16:58:19] 331 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig240593 162..119
[16:58:19] 332 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig242964 1..65
[16:58:19] 333 ncRNA SAM_alpha gnl|goettingen|locustag_contig243364 184..107
[16:58:19] 334 ncRNA cspA gnl|goettingen|locustag_contig243481 1..159
[16:58:19] 335 ncRNA suhB gnl|goettingen|locustag_contig243516 147..69
[16:58:19] 336 ncRNA Glycine gnl|goettingen|locustag_contig243579 185..95
[16:58:19] 337 ncRNA Glycine gnl|goettingen|locustag_contig243579 87..1
[16:58:19] 338 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig243694 134..37
[16:58:19] 339 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig243694 119..59
[16:58:19] 340 ncRNA F6 gnl|goettingen|locustag_contig244013 23..79
[16:58:19] 341 ncRNA STnc400 gnl|goettingen|locustag_contig244414 213..124
[00:35:57] 342 ncRNA isrG gnl|goettingen|locustag_contig245404 179..18
[00:35:57] 343 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig245658 131..176
[00:35:57] 344 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig246554 18..224
[00:35:57] 345 ncRNA SAM_alpha gnl|goettingen|locustag_contig247138 192..118
[00:35:57] 346 ncRNA mir-1265 gnl|goettingen|locustag_contig247691 204..128
[00:35:57] 347 ncRNA mraW gnl|goettingen|locustag_contig250152 121..27
[00:35:57] 348 ncRNA mraW gnl|goettingen|locustag_contig250152 31..125
[00:35:57] 349 ncRNA mir-328 gnl|goettingen|locustag_contig250644 132..44
[00:35:57] 350 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig251033 151..196
[00:35:57] 351 ncRNA TwoAYGGAY gnl|goettingen|locustag_contig252183 11..78
[00:35:57] 352 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig252497 1..223
[00:35:57] 353 ncRNA cspA gnl|goettingen|locustag_contig253196 1..178
[00:35:57] 354 ncRNA TPP gnl|goettingen|locustag_contig256665 193..88
[00:35:57] 355 ncRNA Intron_gpII gnl|goettingen|locustag_contig256959 108..178
[00:35:57] 356 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig257002 223..1
[00:35:57] 357 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig257002 112..13
[00:35:57] 358 ncRNA crcB gnl|goettingen|locustag_contig258611 1..52
[00:35:57] 359 ncRNA isrG gnl|goettingen|locustag_contig259407 1..101
[00:35:57] 360 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig260381 131..222
[00:35:57] 361 ncRNA rpsL_psuedo gnl|goettingen|locustag_contig260984 222..155
[00:35:57] 362 ncRNA Intron_gpII gnl|goettingen|locustag_contig261336 107..212
[00:35:57] 363 ncRNA mraW gnl|goettingen|locustag_contig261730 1..88
[00:35:57] 364 ncRNA CRISPR-DR34 gnl|goettingen|locustag_contig263640 21..56
[00:35:57] 365 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig263649 16..222
[11:14:41] 366 ncRNA ASpks gnl|goettingen|locustag_contig263754 26..100
[11:14:41] 367 ncRNA mraW gnl|goettingen|locustag_contig264717 103..1
[11:14:41] 368 ncRNA mraW gnl|goettingen|locustag_contig265935 217..103
[11:14:41] 369 ncRNA isrG gnl|goettingen|locustag_contig266480 37..221
[11:14:41] 370 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig268238 116..70
[11:14:41] 371 ncRNA P17 gnl|goettingen|locustag_contig270067 84..115
[11:14:41] 372 ncRNA SAM gnl|goettingen|locustag_contig271623 220..135
[11:14:41] 373 ncRNA cspA gnl|goettingen|locustag_contig271928 220..72
[11:14:41] 374 ncRNA ykoK gnl|goettingen|locustag_contig272916 163..220
[11:14:41] 375 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig276019 151..183
[11:14:41] 376 ncRNA CsrC gnl|goettingen|locustag_contig277052 220..120
[11:14:41] 377 ncRNA mir-328 gnl|goettingen|locustag_contig277115 88..168
[11:14:41] 378 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig278510 1..220
[11:14:41] 379 ncRNA mir-598 gnl|goettingen|locustag_contig278635 214..102
[11:14:41] 380 ncRNA SAM_alpha gnl|goettingen|locustag_contig278652 18..95
[11:14:41] 381 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig279286 219..79
[11:14:41] 382 ncRNA mraW gnl|goettingen|locustag_contig280061 1..82
[11:14:41] 383 ncRNA TPP gnl|goettingen|locustag_contig280663 74..1
[11:14:41] 384 ncRNA mir-598 gnl|goettingen|locustag_contig283636 1..92
[11:14:41] 385 ncRNA mir-598 gnl|goettingen|locustag_contig283636 85..1
[11:14:41] 386 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig284242 30..76
[11:14:41] 387 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig285289 79..1
[11:14:41] 388 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig285665 1..219
[11:14:41] 389 ncRNA TPP gnl|goettingen|locustag_contig286746 136..201
[11:14:41] 390 ncRNA Glycine gnl|goettingen|locustag_contig288404 68..167
[17:14:30] 391 ncRNA Glycine gnl|goettingen|locustag_contig290169 100..8
[17:14:30] 392 ncRNA mraW gnl|goettingen|locustag_contig291299 123..218
[17:14:30] 393 ncRNA mir-598 gnl|goettingen|locustag_contig291343 138..218
[17:14:30] 394 ncRNA Cobalamin gnl|goettingen|locustag_contig293686 1..173
[17:14:30] 395 ncRNA speF gnl|goettingen|locustag_contig293809 108..25
[17:14:30] 396 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig294781 8..52
[17:14:30] 397 ncRNA T-box gnl|goettingen|locustag_contig294887 169..1
[17:14:30] 398 ncRNA Cobalamin gnl|goettingen|locustag_contig296292 217..127
[17:14:30] 399 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig296553 138..217
[17:14:30] 400 ncRNA mir-598 gnl|goettingen|locustag_contig297755 144..35
[17:14:30] 401 ncRNA mir-328 gnl|goettingen|locustag_contig297755 125..43
[17:14:30] 402 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig297861 1..139
[17:14:30] 403 ncRNA SAH_riboswitch gnl|goettingen|locustag_contig299326 46..124
[17:14:30] 404 ncRNA mir-598 gnl|goettingen|locustag_contig299451 85..1
[17:14:30] 405 ncRNA mir-598 gnl|goettingen|locustag_contig299451 1..72
[17:14:30] 406 ncRNA mir-598 gnl|goettingen|locustag_contig299686 68..5
[17:14:30] 407 ncRNA mir-598 gnl|goettingen|locustag_contig299686 1..76
[17:14:30] 408 ncRNA suhB gnl|goettingen|locustag_contig300380 159..217
[17:14:30] 409 ncRNA Intron_gpII gnl|goettingen|locustag_contig300421 48..1
[17:14:30] 410 ncRNA STnc400 gnl|goettingen|locustag_contig301692 117..217
[17:14:30] 411 ncRNA Flavo-1 gnl|goettingen|locustag_contig301743 106..173
[17:14:30] 412 ncRNA mir-598 gnl|goettingen|locustag_contig302917 105..4
[17:14:30] 413 ncRNA mir-598 gnl|goettingen|locustag_contig302917 2..105
[17:14:30] 414 ncRNA Glycine gnl|goettingen|locustag_contig303254 63..150
[02:36:53] 415 ncRNA SAM_alpha gnl|goettingen|locustag_contig303582 21..95
[02:36:53] 416 ncRNA Intron_gpII gnl|goettingen|locustag_contig305073 20..92
[02:36:53] 417 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig305731 105..60
[02:36:53] 418 ncRNA Intron_gpII gnl|goettingen|locustag_contig305788 150..214
[02:36:53] 419 ncRNA TPP gnl|goettingen|locustag_contig305905 26..131
[02:36:53] 420 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig308311 151..216
[02:36:53] 421 ncRNA mir-598 gnl|goettingen|locustag_contig309386 98..3
[02:36:53] 422 ncRNA mir-598 gnl|goettingen|locustag_contig309386 10..92
[02:36:53] 423 ncRNA SAM-I-IV-variant gnl|goettingen|locustag_contig309681 59..161
[02:36:53] 424 ncRNA Cobalamin gnl|goettingen|locustag_contig311658 215..132
[02:36:53] 425 ncRNA sbcD gnl|goettingen|locustag_contig311995 1..79
[02:36:53] 426 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig312770 215..68
[02:36:53] 427 ncRNA Glycine gnl|goettingen|locustag_contig313629 184..87
[02:36:53] 428 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig314094 215..56
[02:36:53] 429 ncRNA group-II-D1D4-1 gnl|goettingen|locustag_contig314233 191..113
[02:36:53] 430 ncRNA msiK gnl|goettingen|locustag_contig314401 201..144
[02:36:53] 431 ncRNA mraW gnl|goettingen|locustag_contig315306 214..121
[02:36:53] 432 ncRNA Intron_gpII gnl|goettingen|locustag_contig315468 58..1
[02:36:53] 433 ncRNA ydaO-yuaA gnl|goettingen|locustag_contig317629 61..207
[02:36:53] 434 ncRNA mir-1265 gnl|goettingen|locustag_contig321530 207..121
[02:36:53] 435 ncRNA CC2171 gnl|goettingen|locustag_contig321779 35..1
[02:36:53] 436 ncRNA mir-598 gnl|goettingen|locustag_contig322545 111..206
[02:36:53] 437 ncRNA Cobalamin gnl|goettingen|locustag_contig324218 1..78
[02:36:53] 438 ncRNA Flavo-1 gnl|goettingen|locustag_contig324864 213..143
[02:36:53] 439 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig325935 55..214
[11:18:16] 440 ncRNA SAM_alpha gnl|goettingen|locustag_contig326287 130..53
[11:18:16] 441 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig326565 43..212
[11:18:16] 442 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig326616 58..104
[11:18:16] 443 ncRNA mir-598 gnl|goettingen|locustag_contig327026 86..1
[11:18:16] 444 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig328301 1..87
[11:18:16] 445 ncRNA group-II-D1D4-3 gnl|goettingen|locustag_contig329033 33..200
[11:18:16] 446 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig330409 1..187
[11:18:16] 447 ncRNA cspA gnl|goettingen|locustag_contig331774 213..74
[11:18:16] 448 ncRNA suhB gnl|goettingen|locustag_contig332172 39..116
[11:18:16] 449 ncRNA Cobalamin gnl|goettingen|locustag_contig333235 209..44
[11:18:16] 450 ncRNA TPP gnl|goettingen|locustag_contig333418 127..198
[11:18:16] 451 ncRNA CC3510 gnl|goettingen|locustag_contig334754 201..85
[11:18:16] 452 ncRNA mir-598 gnl|goettingen|locustag_contig335354 92..210
[11:18:16] 453 ncRNA mir-598 gnl|goettingen|locustag_contig335354 201..113
[11:18:16] 454 ncRNA isrG gnl|goettingen|locustag_contig335354 212..40
[11:18:16] 455 ncRNA isrG gnl|goettingen|locustag_contig335354 102..206
[11:18:16] 456 ncRNA CRISPR-DR2 gnl|goettingen|locustag_contig335665 63..92
[11:18:16] 457 ncRNA CRISPR-DR2 gnl|goettingen|locustag_contig335665 128..157
[11:18:16] 458 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig341206 60..18
[11:18:16] 459 ncRNA SECIS_3 gnl|goettingen|locustag_contig341856 131..73
[11:18:16] 460 ncRNA cspA gnl|goettingen|locustag_contig342821 1..212
[11:18:16] 461 ncRNA cspA gnl|goettingen|locustag_contig342899 212..29
[11:18:16] 462 ncRNA mraW gnl|goettingen|locustag_contig343244 212..117
[11:18:16] 463 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig343538 212..94
[00:02:20] 464 ncRNA cspA gnl|goettingen|locustag_contig343790 1..212
[00:02:20] 465 ncRNA mir-598 gnl|goettingen|locustag_contig345116 87..1
[00:02:20] 466 ncRNA mir-598 gnl|goettingen|locustag_contig345116 1..84
[00:02:20] 467 ncRNA cspA gnl|goettingen|locustag_contig347140 1..211
[00:02:20] 468 ncRNA mraW gnl|goettingen|locustag_contig347512 2..103
[00:02:20] 469 ncRNA isrG gnl|goettingen|locustag_contig347512 102..2
[00:02:20] 470 ncRNA mir-328 gnl|goettingen|locustag_contig348655 3..80
[00:02:20] 471 ncRNA mraW gnl|goettingen|locustag_contig349924 1..100
[00:02:20] 472 ncRNA cspA gnl|goettingen|locustag_contig350610 1..162
[00:02:20] 473 ncRNA mir-598 gnl|goettingen|locustag_contig351249 6..64
[00:02:20] 474 ncRNA mir-598 gnl|goettingen|locustag_contig351249 64..6
[00:02:20] 475 ncRNA Acido-Lenti-1 gnl|goettingen|locustag_contig353210 56..11
[00:02:20] 476 ncRNA Intron_gpII gnl|goettingen|locustag_contig354351 151..58
[00:02:20] 477 ncRNA mir-598 gnl|goettingen|locustag_contig354959 207..105
[00:02:20] 478 ncRNA mir-1265 gnl|goettingen|locustag_contig355576 127..202
[00:02:20] 479 ncRNA mir-598 gnl|goettingen|locustag_contig357008 128..210
[00:02:20] 480 ncRNA c-di-GMP-I gnl|goettingen|locustag_contig361495 118..192
[00:02:20] 481 ncRNA rpsB gnl|goettingen|locustag_contig363183 134..35
[00:02:20] 482 ncRNA yybP-ykoY gnl|goettingen|locustag_contig363230 123..1
[00:02:20] 483 ncRNA mraW gnl|goettingen|locustag_contig363872 111..1
[00:02:20] 484 ncRNA mraW gnl|goettingen|locustag_contig367753 141..209
[00:02:20] 485 ncRNA mraW gnl|goettingen|locustag_contig367753 205..137
[00:02:20] 486 ncRNA mir-598 gnl|goettingen|locustag_contig368037 121..195
[00:02:20] 487 ncRNA mir-598 gnl|goettingen|locustag_contig368037 195..121
[00:02:20] 488 ncRNA isrG gnl|goettingen|locustag_contig368037 77..204
[10:52:21] 489 ncRNA t44 gnl|goettingen|locustag_contig370672 19..98
[10:52:21] 490 ncRNA T-box gnl|goettingen|locustag_contig373697 208..174
[10:52:21] 491 ncRNA cspA gnl|goettingen|locustag_contig374180 208..63
[10:52:21] 492 ncRNA Bacteria_small_SRP gnl|goettingen|locustag_contig376651 48..147
[10:52:21] 493 ncRNA Bacteria_large_SRP gnl|goettingen|locustag_contig376651 48..146
[10:52:21] 494 ncRNA RNaseP_bact_a gnl|goettingen|locustag_contig382580 207..1
[10:52:21] 495 ncRNA mraW gnl|goettingen|locustag_contig383441 2..106
[10:52:21] 496 ncRNA mraW gnl|goettingen|locustag_contig383441 102..1
[10:52:21] 497 ncRNA Archaea_SRP gnl|goettingen|locustag_contig383441 1..113
[10:52:21] 498 ncRNA mir-598 gnl|goettingen|locustag_contig386012 207..129
[10:52:21] 499 ncRNA mir-598 gnl|goettingen|locustag_contig386012 126..207
[10:52:21] 500 ncRNA STnc100 gnl|goettingen|locustag_contig387818 1..58
[10:52:21] 501 ncRNA mir-598 gnl|goettingen|locustag_contig387959 50..141
[10:52:21] 502 ncRNA group-II-D1D4-6 gnl|goettingen|locustag_contig389846 75..207
[10:52:21] 503 ncRNA group-II-D1D4-4 gnl|goettingen|locustag_contig389846 66..179
[10:52:21] 504 ncRNA mir-598 gnl|goettingen|locustag_contig391553 130..201
[10:52:21] Found 504 ncRNAs.
[10:52:22] Total of 644 tRNA + rRNA features
[10:52:22] Searching for CRISPR repeats
[10:52:29] CRISPR1 gnl|goettingen|locustag_contig105219 39 with 4 spacers
[10:52:31] CRISPR2 gnl|goettingen|locustag_contig146152 1 with 4 spacers
[10:52:31] CRISPR3 gnl|goettingen|locustag_contig148600 20 with 3 spacers
[10:52:31] CRISPR4 gnl|goettingen|locustag_contig161048 1 with 3 spacers
[10:52:32] CRISPR5 gnl|goettingen|locustag_contig185943 15 with 3 spacers
[10:52:32] CRISPR6 gnl|goettingen|locustag_contig196458 19 with 3 spacers
[10:52:33] CRISPR7 gnl|goettingen|locustag_contig210219 5 with 3 spacers
[10:52:33] CRISPR8 gnl|goettingen|locustag_contig220598 23 with 3 spacers
[10:52:33] CRISPR9 gnl|goettingen|locustag_contig225829 6 with 3 spacers
[10:52:34] CRISPR10 gnl|goettingen|locustag_contig239524 35 with 3 spacers
[10:52:34] CRISPR11 gnl|goettingen|locustag_contig262780 54 with 3 spacers
[10:52:34] CRISPR12 gnl|goettingen|locustag_contig265842 21 with 3 spacers
[10:52:35] CRISPR13 gnl|goettingen|locustag_contig289318 17 with 3 spacers
[10:52:35] CRISPR14 gnl|goettingen|locustag_contig290401 1 with 3 spacers
[10:52:35] CRISPR15 gnl|goettingen|locustag_contig292507 45 with 3 spacers
[10:52:36] CRISPR16 gnl|goettingen|locustag_contig335665 1 with 3 spacers
[10:52:36] CRISPR17 gnl|goettingen|locustag_contig351883 29 with 3 spacers
[10:52:36] CRISPR18 gnl|goettingen|locustag_contig354853 22 with 3 spacers
[10:52:36] CRISPR19 gnl|goettingen|locustag_contig362614 54 with 3 spacers
[10:52:36] CRISPR20 gnl|goettingen|locustag_contig374212 1 with 3 spacers
[10:52:37] CRISPR21 gnl|goettingen|locustag_contig387060 10 with 3 spacers
[10:52:37] Found 21 CRISPRs
[10:52:37] Predicting coding sequences
[10:52:41] Contigs total 97193646 bp, so using meta mode
[10:52:41] Running: prodigal -i REGE2\/prefix\.fna -c -m -g 11 -p meta -f sco -q
[10:52:45] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig000414:2..664 on + strand
[10:52:48] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig001052:34..543 on + strand
[10:52:55] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig002755:232..462 on - strand
[10:52:56] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig003190:193..516 on - strand
[10:53:04] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig006068:79..414 on - strand
[10:53:05] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig006761:68..406 on - strand
[10:53:07] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig007644:109..273 on + strand
[10:53:22] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig015767:131..358 on - strand
[10:53:41] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig029065:32..253 on - strand
[10:53:50] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig036501:11..241 on + strand
[10:54:06] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig051071:77..253 on + strand
[10:54:17] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig062083:4..195 on - strand
[10:54:48] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig095239:68..250 on + strand
[10:55:07] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig116682:126..233 on - strand
[10:55:43] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig161464:32..223 on - strand
[10:55:56] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig179791:13..228 on - strand
[10:56:14] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig205546:6..212 on - strand
[10:56:15] Excluding CDS which overlaps existing RNA (tRNA) at gnl|goettingen|locustag_contig206198:21..194 on + strand
[10:58:06] Found 33012 CDS
[10:58:06] Connecting features back to sequences
[10:58:08] Option --gram not specified, will NOT check for signal peptides.
[10:58:08] Not using genus-specific database. Try --usegenus to enable it.
[10:58:08] Annotating CDS, please be patient.
[10:58:08] Will use 8 CPUs for similarity searching.

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig020730]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig030733]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig040629]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig059616]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig062648]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig068877]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig083997]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig107720]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig109984]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig136197]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139017]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139985]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig140645]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig148449]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig151768]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig154514]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig171061]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig226321]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig233516]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig347824]: Terminator codon inside CDS!
---------------------------------------------------
[10:58:27] There are still 33012 unannotated CDS left (started with 33012)
[10:58:27] Will use blast to search against /opt/tools/prokka/bin/../db/kingdom/Bacteria/sprot with 8 CPUs
[10:58:27] Running: cat REGE2\/sprot\.faa | parallel --gnu --plain -j 8 --block 153397 --recstart '>' --pipe blastp -query - -db /opt/tools/prokka/bin/../db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > REGE2\/sprot\.blast 2> /dev/null
[11:01:09] Modify product: Probable aromatic acid decarboxylase => putative aromatic acid decarboxylase
[11:01:09] Modify product: Probable metallo-hydrolase M6_Spy0554 => putative metallo-hydrolase
[11:01:10] Modify product: Uncharacterized inner membrane transporter YedA => putative inner membrane transporter YedA
[11:01:10] Modify product: Probable 3-hydroxyacyl-CoA dehydrogenase => putative 3-hydroxyacyl-CoA dehydrogenase
[11:01:10] Modify product: Probable tartrate dehydrogenase/decarboxylase TtuC => putative tartrate dehydrogenase/decarboxylase TtuC
[11:01:10] Modify product: Probable parvulin-type peptidyl-prolyl cis-trans isomerase precursor => putative parvulin-type peptidyl-prolyl cis-trans isomerase precursor
[11:01:10] Modify product: Probable Fe(2+)-trafficking protein => putative Fe(2+)-trafficking protein
[11:01:10] Modify product: Chemotaxis protein CheY homolog => hypothetical protein
[11:01:11] Modify product: Uncharacterized oxidoreductase SAV2478 => putative oxidoreductase
[11:01:11] Modify product: Uncharacterized peptidase SA1530 => putative peptidase
[11:01:11] Modify product: Uncharacterized deoxyribonuclease YcfH => putative deoxyribonuclease YcfH
[11:01:11] Modify product: Probable peptidyl-prolyl cis-trans isomerase => putative peptidyl-prolyl cis-trans isomerase
[11:01:11] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:01:11] Modify product: Nucleoid-associated protein PFL_1905 => Nucleoid-associated protein
[11:01:11] Modify product: Probable 3-hydroxybutyryl-CoA dehydrogenase => putative 3-hydroxybutyryl-CoA dehydrogenase
[11:01:12] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[11:01:12] Modify product: Putative phosphoribosyl transferase Rv0571c/MT0597 => Putative phosphoribosyl transferase/MT0597
[11:01:12] Modify product: Uncharacterized FAD-linked oxidoreductase Rv2280 => putative FAD-linked oxidoreductase
[11:01:12] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_1087 => putative ABC transporter ATP-binding protein
[11:01:12] Modify product: Probable diguanylate cyclase YdaM => putative diguanylate cyclase YdaM
[11:01:12] Modify product: Probable cysteine desulfurase => putative cysteine desulfurase
[11:01:12] Modify product: Probable thiol:disulfide interchange protein DsbC precursor => putative thiol:disulfide interchange protein DsbC precursor
[11:01:12] Modify product: Transcription termination/antitermination protein NusA => hypothetical protein
[11:01:13] Modify product: Probable nicotinate-nucleotide adenylyltransferase => putative nicotinate-nucleotide adenylyltransferase
[11:01:13] Modify product: Probable periplasmic serine endoprotease DegP-like precursor => putative periplasmic serine endoprotease DegP-like precursor
[11:01:13] Modify product: Probable L-asparaginase => putative L-asparaginase
[11:01:13] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:14] Modify product: Uncharacterized deoxyribonuclease YcfH => putative deoxyribonuclease YcfH
[11:01:14] Modify product: Probable periplasmic serine endoprotease DegP-like precursor => putative periplasmic serine endoprotease DegP-like precursor
[11:01:14] Modify product: Probable acyl-CoA dehydrogenase => putative acyl-CoA dehydrogenase
[11:01:15] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:15] Modify product: Probable aromatic acid decarboxylase => putative aromatic acid decarboxylase
[11:01:15] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:15] Modify product: Probable adenylyltransferase/sulfurtransferase MoeZ => putative adenylyltransferase/sulfurtransferase MoeZ
[11:01:15] Modify product: Virulence protein STM3117 => Virulence protein
[11:01:15] Modify product: Putative anti-sigma factor antagonist TM_1442 => Putative anti-sigma factor antagonist
[11:01:16] Modify product: Probable nicotinate-nucleotide adenylyltransferase => putative nicotinate-nucleotide adenylyltransferase
[11:01:17] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:17] Modify product: DNA repair protein RadA homolog => hypothetical protein
[11:01:17] Modify product: Putative HTH-type transcriptional regulator Rv0890c/MT0914 => Putative HTH-type transcriptional regulator/MT0914
[11:01:17] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheI => putative multidrug resistance ABC transporter ATP-binding/permease protein YheI
[11:01:17] Modify product: Putative phosphoribosyl transferase Rv0571c/MT0597 => Putative phosphoribosyl transferase/MT0597
[11:01:18] Modify product: Probable lipoprotein YiaD precursor => putative lipoprotein YiaD precursor
[11:01:18] Modify product: Uncharacterized ABC transporter ATP-binding protein YjjK => putative ABC transporter ATP-binding protein YjjK
[11:01:18] Modify product: Probable Fe(2+)-trafficking protein => putative Fe(2+)-trafficking protein
[11:01:18] Modify product: Probable 3-hydroxybutyryl-CoA dehydrogenase => putative 3-hydroxybutyryl-CoA dehydrogenase
[11:01:18] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:19] Modify product: Probable metallo-hydrolase M6_Spy0554 => putative metallo-hydrolase
[11:01:19] Modify product: Putative acyltransferase Rv0859 => Putative acyltransferase
[11:01:19] Modify product: Uncharacterized ABC transporter ATP-binding protein TM_0288 => putative ABC transporter ATP-binding protein
[11:01:19] Modify product: ABC transporter ATP-binding/permease protein Rv1747 => ABC transporter ATP-binding/permease protein
[11:01:19] Modify product: Uncharacterized FAD-linked oxidoreductase YvdP => putative FAD-linked oxidoreductase YvdP
[11:01:19] Modify product: Probable propionyl-CoA carboxylase beta chain 5 => putative propionyl-CoA carboxylase beta chain 5
[11:01:19] Modify product: Probable propionyl-CoA carboxylase beta chain 5 => putative propionyl-CoA carboxylase beta chain 5
[11:01:19] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH => putative multidrug resistance ABC transporter ATP-binding/permease protein YheH
[11:01:19] Modify product: Uncharacterized HTH-type transcriptional regulator YdcR => putative HTH-type transcriptional regulator YdcR
[11:01:19] Modify product: Cyclic nucleotide-gated potassium channel mll3241 => Cyclic nucleotide-gated potassium channel
[11:01:20] Modify product: Uncharacterized ABC transporter ATP-binding protein YjjK => putative ABC transporter ATP-binding protein YjjK
[11:01:20] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH => putative multidrug resistance ABC transporter ATP-binding/permease protein YheH
[11:01:20] Modify product: Probable RNA polymerase sigma factor FecI => putative RNA polymerase sigma factor FecI
[11:01:20] Modify product: Probable FKBP-type peptidyl-prolyl cis-trans isomerase => putative FKBP-type peptidyl-prolyl cis-trans isomerase
[11:01:20] Modify product: Uncharacterized N-acetyltransferase YsnE => putative N-acetyltransferase YsnE
[11:01:20] Modify product: Probable copper-exporting P-type ATPase V => putative copper-exporting P-type ATPase V
[11:01:21] Modify product: Carbon storage regulator homolog => hypothetical protein
[11:01:21] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:21] Modify product: Universal stress protein Rv2005c/MT2061 => Universal stress protein/MT2061
[11:01:21] Modify product: Probable thiol:disulfide interchange protein DsbC precursor => putative thiol:disulfide interchange protein DsbC precursor
[11:01:21] Modify product: Uncharacterized membrane protein YjcC => putative membrane protein YjcC
[11:01:21] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:21] Modify product: Stringent starvation protein B homolog => hypothetical protein
[11:01:22] Modify product: Probable DNA endonuclease SmrA => putative DNA endonuclease SmrA
[11:01:22] Modify product: Uncharacterized inner membrane transporter YedA => putative inner membrane transporter YedA
[11:01:22] Modify product: Probable cadmium-transporting ATPase => putative cadmium-transporting ATPase
[11:01:22] Modify product: Putative cystathionine beta-synthase Rv1077 => Putative cystathionine beta-synthase
[11:01:22] Modify product: Probable D,D-dipeptide transport system permease protein DdpC => putative D,D-dipeptide transport system permease protein DdpC
[11:01:23] Modify product: Probable parvulin-type peptidyl-prolyl cis-trans isomerase precursor => putative parvulin-type peptidyl-prolyl cis-trans isomerase precursor
[11:01:23] Modify product: Probable peptidyl-prolyl cis-trans isomerase => putative peptidyl-prolyl cis-trans isomerase
[11:01:23] Modify product: Uncharacterized hydrolase HI_0588 => putative hydrolase
[11:01:23] Modify product: Stringent starvation protein A homolog => hypothetical protein
[11:01:23] Modify product: Cysteine synthase homolog DscD => hypothetical protein
[11:01:23] Modify product: Putative 2-hydroxyacid dehydrogenase SAV2305 => Putative 2-hydroxyacid dehydrogenase
[11:01:24] Modify product: Uncharacterized PIN and TRAM-domain containing protein TTHA0540 precursor => putative PIN and TRAM-domain containing protein precursor
[11:01:24] Modify product: Uncharacterized deoxyribonuclease YcfH => putative deoxyribonuclease YcfH
[11:01:24] Modify product: Probable L-asparaginase => putative L-asparaginase
[11:01:24] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[11:01:24] Modify product: Probable protein kinase UbiB => putative protein kinase UbiB
[11:01:24] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:24] Modify product: Uncharacterized membrane protein Rv1735c/MT1776 => putative membrane protein/MT1776
[11:01:24] Modify product: Probable transcriptional regulatory protein CBU_1566 => putative transcriptional regulatory protein
[11:01:24] Modify product: Probable 3-hydroxybutyryl-CoA dehydrogenase => putative 3-hydroxybutyryl-CoA dehydrogenase
[11:01:25] Modify product: Uncharacterized hydrolase HI_0588 => putative hydrolase
[11:01:25] Modify product: Probable phospholipid ABC transporter permease protein MlaE => putative phospholipid ABC transporter permease protein MlaE
[11:01:25] Modify product: Uncharacterized ABC transporter ATP-binding protein Rv2477c/MT2552 => putative ABC transporter ATP-binding protein/MT2552
[11:01:25] Modify product: Probable cysteine desulfurase => putative cysteine desulfurase
[11:01:25] Modify product: Probable phospholipid-binding protein MlaC precursor => putative phospholipid-binding protein MlaC precursor
[11:01:25] Modify product: Probable glycine dehydrogenase (decarboxylating) subunit 1 => putative glycine dehydrogenase (decarboxylating) subunit 1
[11:01:25] Modify product: Probable GTP-binding protein EngB => putative GTP-binding protein EngB
[11:01:25] Modify product: Transcription termination factor Rho => hypothetical protein
[11:01:25] Modify product: Probable transcriptional regulatory protein pdtaR => putative transcriptional regulatory protein pdtaR
[11:01:25] Modify product: Probable phospholipid-binding protein MlaC precursor => putative phospholipid-binding protein MlaC precursor
[11:01:26] Modify product: Uncharacterized acyl-CoA thioester hydrolase HI_0827 => putative acyl-CoA thioester hydrolase
[11:01:27] Modify product: Probable adenylyltransferase/sulfurtransferase MoeZ => putative adenylyltransferase/sulfurtransferase MoeZ
[11:01:27] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:01:27] Modify product: Nucleoid-associated protein PFL_1905 => Nucleoid-associated protein
[11:01:27] Modify product: Nucleoid-associated protein Cthe_2143 => Nucleoid-associated protein
[11:01:28] Modify product: Epimerase family protein SA0724 => Epimerase family protein
[11:01:28] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:28] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
[11:01:28] Modify product: Probable periplasmic serine endoprotease DegP-like precursor => putative periplasmic serine endoprotease DegP-like precursor
[11:01:28] Modify product: Probable cysteine desulfurase => putative cysteine desulfurase
[11:01:28] Modify product: Probable cadmium-transporting ATPase => putative cadmium-transporting ATPase
[11:01:28] Modify product: Uncharacterized oxidoreductase YjmC => putative oxidoreductase YjmC
[11:01:29] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:01:29] Modify product: Putative phosphoribosyl transferase Rv0571c/MT0597 => Putative phosphoribosyl transferase/MT0597
[11:01:29] Modify product: TelA-like protein SA1238 => TelA-like protein
[11:01:29] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
[11:01:29] Modify product: Probable ATP-dependent helicase DinG homolog => hypothetical protein
[11:01:29] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_1252 => putative ABC transporter ATP-binding protein
[11:01:29] Modify product: Putative universal stress protein SAV1710 => Putative universal stress protein
[11:01:29] Modify product: Transcription termination factor Rho => hypothetical protein
[11:01:29] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:01:29] Modify product: Probable bifunctional SAT/APS kinase => putative bifunctional SAT/APS kinase
[11:01:29] Modify product: Uncharacterized oxidoreductase YjmC => putative oxidoreductase YjmC
[11:01:30] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:01:30] Modify product: Probable D,D-dipeptide transport system permease protein DdpC => putative D,D-dipeptide transport system permease protein DdpC
[11:01:30] Modify product: Putative 2-hydroxyacid dehydrogenase HI_1556 => Putative 2-hydroxyacid dehydrogenase
[11:01:30] Modify product: Uncharacterized membrane protein YjcC => putative membrane protein YjcC
[11:01:30] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_1087 => putative ABC transporter ATP-binding protein
[11:01:31] Modify product: Uncharacterized oxidoreductase YciK => putative oxidoreductase YciK
[11:01:31] Modify product: Putative peroxiredoxin Rv2238c/MT2298 => Putative peroxiredoxin/MT2298
[11:01:31] Modify product: Cytochrome c oxidase subunit 1 homolog, bacteroid => hypothetical protein
[11:01:31] Modify product: Probable thiol peroxidase => putative thiol peroxidase
[11:01:31] Modify product: Probable phospholipid ABC transporter-binding protein MlaD => putative phospholipid ABC transporter-binding protein MlaD
[11:01:31] Modify product: Transcription termination factor Rho => hypothetical protein
[11:01:31] Modify product: Probable xanthine dehydrogenase subunit A => putative xanthine dehydrogenase subunit A
[11:01:31] Modify product: Probable multidrug resistance protein EmrK => putative multidrug resistance protein EmrK
[11:01:31] Modify product: Probable inorganic polyphosphate/ATP-NAD kinase => putative inorganic polyphosphate/ATP-NAD kinase
[11:01:32] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:32] Modify product: HIT-like protein HI_0961 => HIT-like protein
[11:01:32] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_0658 => putative ABC transporter ATP-binding protein
[11:01:32] Modify product: Probable periplasmic serine endoprotease DegP-like precursor => putative periplasmic serine endoprotease DegP-like precursor
[11:01:32] Modify product: Uncharacterized ABC transporter ATP-binding protein YbhF => putative ABC transporter ATP-binding protein YbhF
[11:01:32] Modify product: Probable phospholipid-binding protein MlaC precursor => putative phospholipid-binding protein MlaC precursor
[11:01:32] Modify product: Uncharacterized peptidase SA1530 => putative peptidase
[11:01:33] Modify product: Universal stress protein Rv2005c/MT2061 => Universal stress protein/MT2061
[11:01:33] Modify product: Putative HTH-type transcriptional regulator Rv0890c/MT0914 => Putative HTH-type transcriptional regulator/MT0914
[11:01:33] Modify product: Probable thiol:disulfide interchange protein DsbC precursor => putative thiol:disulfide interchange protein DsbC precursor
[11:01:33] Modify product: Probable ATP-dependent transporter SufC => putative ATP-dependent transporter SufC
[11:01:33] Modify product: Probable phospholipid-binding protein MlaC precursor => putative phospholipid-binding protein MlaC precursor
[11:01:34] Modify product: SCO1 protein homolog precursor => hypothetical protein
[11:01:34] Modify product: Phosphate-specific transport system accessory protein PhoU homolog => hypothetical protein
[11:01:34] Modify product: Stringent starvation protein B homolog => hypothetical protein
[11:01:34] Modify product: Uncharacterized HTH-type transcriptional regulator YbaQ => putative HTH-type transcriptional regulator YbaQ
[11:01:34] Modify product: Uncharacterized HTH-type transcriptional regulator YdfH => putative HTH-type transcriptional regulator YdfH
[11:01:34] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_1087 => putative ABC transporter ATP-binding protein
[11:01:35] Modify product: Fluoroquinolones export ATP-binding protein Rv2688c/MT2762 => Fluoroquinolones export ATP-binding protein/MT2762
[11:01:35] Modify product: Universal stress protein Rv2026c/MT2085 => Universal stress protein/MT2085
[11:01:35] Modify product: Probable thiol:disulfide interchange protein DsbC precursor => putative thiol:disulfide interchange protein DsbC precursor
[11:01:35] Modify product: Uncharacterized FAD-linked oxidoreductase YvdP => putative FAD-linked oxidoreductase YvdP
[11:01:35] Modify product: Probable Fe(2+)-trafficking protein => putative Fe(2+)-trafficking protein
[11:01:35] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:35] Modify product: Universal stress protein A homolog 2 => hypothetical protein
[11:01:35] Modify product: Probable phospholipid-binding protein MlaC precursor => putative phospholipid-binding protein MlaC precursor
[11:01:36] Modify product: Uncharacterized ABC transporter ATP-binding protein Rv0986/MT1014 => putative ABC transporter ATP-binding protein/MT1014
[11:01:36] Modify product: Putative DNA ligase-like protein Rv0938/MT0965 => Putative DNA ligase-like protein/MT0965
[11:01:36] Modify product: Probable 2,4-dienoyl-CoA reductase => putative 2,4-dienoyl-CoA reductase
[11:01:36] Modify product: Uncharacterized oxidoreductase YghA => putative oxidoreductase YghA
[11:01:36] Modify product: Probable ferritin-1 => putative ferritin-1
[11:01:36] Modify product: Universal stress protein E homolog => hypothetical protein
[11:01:36] Modify product: Probable propionyl-CoA carboxylase beta chain 5 => putative propionyl-CoA carboxylase beta chain 5
[11:01:37] Modify product: Epimerase family protein SA0724 => Epimerase family protein
[11:01:37] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:37] Modify product: Uncharacterized membrane protein YjcC => putative membrane protein YjcC
[11:01:37] Modify product: Uncharacterized ABC transporter ATP-binding protein Rv0986/MT1014 => putative ABC transporter ATP-binding protein/MT1014
[11:01:37] Modify product: Probable glutaredoxin ssr2061 => putative glutaredoxin
[11:01:37] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:37] Modify product: Probable ABC transporter permease protein HI_1471 => putative ABC transporter permease protein
[11:01:37] Modify product: Probable quorum-quenching lactonase YtnP => putative quorum-quenching lactonase YtnP
[11:01:38] Modify product: Uncharacterized FAD-linked oxidoreductase Rv2280 => putative FAD-linked oxidoreductase
[11:01:38] Modify product: Probable aromatic acid decarboxylase => putative aromatic acid decarboxylase
[11:01:38] Modify product: Probable aromatic acid decarboxylase => putative aromatic acid decarboxylase
[11:01:38] Modify product: Probable siderophore transport system permease protein YfhA => putative siderophore transport system permease protein YfhA
[11:01:38] Modify product: Probable transcriptional regulatory protein aq_1575 => putative transcriptional regulatory protein
[11:01:38] Modify product: Uncharacterized FAD-linked oxidoreductase Rv2280 => putative FAD-linked oxidoreductase
[11:01:38] Modify product: Probable 2,4-dienoyl-CoA reductase => putative 2,4-dienoyl-CoA reductase
[11:01:38] Modify product: Universal stress protein Rv2026c/MT2085 => Universal stress protein/MT2085
[11:01:38] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
[11:01:39] Modify product: Probable cysteine desulfurase => putative cysteine desulfurase
[11:01:39] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[11:01:39] Modify product: Probable periplasmic serine endoprotease DegP-like precursor => putative periplasmic serine endoprotease DegP-like precursor
[11:01:39] Modify product: Putative ABC transporter ATP-binding protein MG187 homolog => hypothetical protein
[11:01:39] Modify product: Uncharacterized dioxygenase Rv3406/MT3514 => putative dioxygenase/MT3514
[11:01:39] Modify product: Probable phospholipid import ATP-binding protein MlaF => putative phospholipid import ATP-binding protein MlaF
[11:01:39] Modify product: Probable transcriptional regulatory protein MSMEG_2940/MSMEI_2866 => putative transcriptional regulatory protein/MSMEI_2866
[11:01:39] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:40] Modify product: Uncharacterized sugar kinase YdjH => putative sugar kinase YdjH
[11:01:40] Modify product: Probable malonic semialdehyde reductase RutE => putative malonic semialdehyde reductase RutE
[11:01:40] Modify product: Putative nitroreductase Rv1558/MT1609 => Putative nitroreductase/MT1609
[11:01:40] Modify product: Uncharacterized ABC transporter ATP-binding protein YjjK => putative ABC transporter ATP-binding protein YjjK
[11:01:40] Modify product: Serine protease Rv3671c => Serine protease
[11:01:40] Modify product: Probable tartrate dehydrogenase/decarboxylase TtuC' => putative tartrate dehydrogenase/decarboxylase TtuC'
[11:01:40] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:40] Modify product: Probable D,D-dipeptide transport system permease protein DdpC => putative D,D-dipeptide transport system permease protein DdpC
[11:01:40] Modify product: Probable tartrate dehydrogenase/decarboxylase TtuC => putative tartrate dehydrogenase/decarboxylase TtuC
[11:01:40] Modify product: Uncharacterized membrane protein YjcC => putative membrane protein YjcC
[11:01:41] Modify product: Putative ABC transporter ATP-binding protein MG187 homolog => hypothetical protein
[11:01:41] Modify product: Uncharacterized sugar transferase EpsL => putative sugar transferase EpsL
[11:01:41] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:01:41] Modify product: Probable L,D-transpeptidase YnhG precursor => putative L,D-transpeptidase YnhG precursor
[11:01:42] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:42] Modify product: Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] => putative nicotinate-nucleotide pyrophosphorylase [carboxylating]
[11:01:42] Modify product: Probable tartrate dehydrogenase/decarboxylase TtuC' => putative tartrate dehydrogenase/decarboxylase TtuC'
[11:01:42] Modify product: Probable Fe(2+)-trafficking protein => putative Fe(2+)-trafficking protein
[11:01:43] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:43] Modify product: Epimerase family protein SA0724 => Epimerase family protein
[11:01:43] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH => putative multidrug resistance ABC transporter ATP-binding/permease protein YheH
[11:01:43] Modify product: Probable enoyl-CoA hydratase 1 => putative enoyl-CoA hydratase 1
[11:01:43] Modify product: Putative cystathionine beta-synthase Rv1077 => Putative cystathionine beta-synthase
[11:01:44] Modify product: Phosphate-specific transport system accessory protein PhoU homolog => hypothetical protein
[11:01:44] Modify product: Probable glutamine ABC transporter permease protein GlnP => putative glutamine ABC transporter permease protein GlnP
[11:01:44] Modify product: Probable FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor => putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor
[11:01:44] Modify product: Uncharacterized N-acetyltransferase YsnE => putative N-acetyltransferase YsnE
[11:01:44] Modify product: Probable phospholipid-binding protein MlaC precursor => putative phospholipid-binding protein MlaC precursor
[11:01:44] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:44] Modify product: Uncharacterized ABC transporter ATP-binding protein Rv2477c/MT2552 => putative ABC transporter ATP-binding protein/MT2552
[11:01:44] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:45] Modify product: Probable L,D-transpeptidase YbiS precursor => putative L,D-transpeptidase YbiS precursor
[11:01:45] Modify product: Probable glutaredoxin ssr2061 => putative glutaredoxin
[11:01:45] Modify product: Tricorn protease homolog 1 => hypothetical protein
[11:01:45] Modify product: Probable Fe(2+)-trafficking protein => putative Fe(2+)-trafficking protein
[11:01:45] Modify product: Nucleoid-associated protein PFL_1905 => Nucleoid-associated protein
[11:01:45] Modify product: Probable 3-hydroxybutyryl-CoA dehydrogenase => putative 3-hydroxybutyryl-CoA dehydrogenase
[11:01:45] Modify product: Uncharacterized FAD-linked oxidoreductase Rv2280 => putative FAD-linked oxidoreductase
[11:01:45] Modify product: Probable enoyl-CoA hydratase 1 => putative enoyl-CoA hydratase 1
[11:01:45] Modify product: Uncharacterized HTH-type transcriptional regulator YybR => putative HTH-type transcriptional regulator YybR
[11:01:45] Modify product: Probable inorganic polyphosphate/ATP-NAD kinase => putative inorganic polyphosphate/ATP-NAD kinase
[11:01:45] Modify product: Putative DNA ligase-like protein Rv0938/MT0965 => Putative DNA ligase-like protein/MT0965
[11:01:46] Modify product: Probable 3-hydroxyacyl-CoA dehydrogenase => putative 3-hydroxyacyl-CoA dehydrogenase
[11:01:46] Modify product: Probable transcriptional regulator WhiB6 => putative transcriptional regulator WhiB6
[11:01:46] Modify product: Probable transaldolase => putative transaldolase
[11:01:46] Modify product: Uncharacterized HTH-type transcriptional regulator YjiR => putative HTH-type transcriptional regulator YjiR
[11:01:46] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:46] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:46] Modify product: Transcription termination factor Rho => hypothetical protein
[11:01:46] Modify product: Uncharacterized PIN and TRAM-domain containing protein TTHA0540 precursor => putative PIN and TRAM-domain containing protein precursor
[11:01:46] Modify product: Probable lipoprotein YiaD precursor => putative lipoprotein YiaD precursor
[11:01:46] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:47] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:47] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH => putative multidrug resistance ABC transporter ATP-binding/permease protein YheH
[11:01:47] Modify product: Probable acyl-CoA dehydrogenase => putative acyl-CoA dehydrogenase
[11:01:47] Modify product: Probable adenylyltransferase/sulfurtransferase MoeZ => putative adenylyltransferase/sulfurtransferase MoeZ
[11:01:47] Modify product: Probable transcriptional regulator WhiB7 => putative transcriptional regulator WhiB7
[11:01:47] Modify product: Probable glutamine synthetase 2 => putative glutamine synthetase 2
[11:01:47] Modify product: Probable glycine dehydrogenase (decarboxylating) subunit 2 => putative glycine dehydrogenase (decarboxylating) subunit 2
[11:01:47] Modify product: Transcription termination factor Rho => hypothetical protein
[11:01:48] Modify product: Probable inactive lipase Rv1592c/MT1628 => putative inactive lipase/MT1628
[11:01:48] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH => putative multidrug resistance ABC transporter ATP-binding/permease protein YheH
[11:01:48] Modify product: Uncharacterized HTH-type transcriptional regulator YybR => putative HTH-type transcriptional regulator YybR
[11:01:48] Modify product: Nucleoid-associated protein HI_0442 => Nucleoid-associated protein
[11:01:48] Modify product: Probable thiol peroxidase => putative thiol peroxidase
[11:01:49] Modify product: Epimerase family protein SA0724 => Epimerase family protein
[11:01:49] Modify product: Uncharacterized periplasmic iron-binding protein HI_0362 precursor => putative periplasmic iron-binding protein precursor
[11:01:49] Modify product: Nucleoid-associated protein Cthe_2143 => Nucleoid-associated protein
[11:01:49] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:49] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:49] Modify product: Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH => putative multidrug resistance ABC transporter ATP-binding/permease protein YheH
[11:01:49] Modify product: GTP-binding protein TypA/BipA homolog => hypothetical protein
[11:01:49] Modify product: Probable glutamine synthetase 2 => putative glutamine synthetase 2
[11:01:50] Modify product: Putative phosphatase HI_0003 => Putative phosphatase
[11:01:50] Modify product: Uncharacterized ABC transporter ATP-binding protein YbhF => putative ABC transporter ATP-binding protein YbhF
[11:01:50] Modify product: Probable metallo-hydrolase BURPS1710b_2304 => putative metallo-hydrolase
[11:01:50] Modify product: Putative phosphatase M6_Spy0533 => Putative phosphatase
[11:01:51] Modify product: Probable transcriptional regulatory protein YebC => putative transcriptional regulatory protein YebC
[11:01:51] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:51] Modify product: Probable lipoprotein YiaD precursor => putative lipoprotein YiaD precursor
[11:01:51] Modify product: Probable transcriptional regulatory protein TcrX => putative transcriptional regulatory protein TcrX
[11:01:51] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:01:51] Modify product: Uncharacterized HTH-type transcriptional regulator YddM => putative HTH-type transcriptional regulator YddM
[11:01:51] Modify product: Uncharacterized oxidoreductase MSMEG_2408/MSMEI_2347 => putative oxidoreductase/MSMEI_2347
[11:01:52] Modify product: Phosphate-specific transport system accessory protein PhoU homolog => hypothetical protein
[11:01:52] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:52] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:52] Modify product: Transcription termination factor Rho => hypothetical protein
[11:01:52] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:52] Modify product: Probable copper-exporting P-type ATPase V => putative copper-exporting P-type ATPase V
[11:01:52] Modify product: Probable 2,4-dienoyl-CoA reductase => putative 2,4-dienoyl-CoA reductase
[11:01:52] Modify product: Probable 2,4-dienoyl-CoA reductase => putative 2,4-dienoyl-CoA reductase
[11:01:53] Modify product: Cysteine synthase homolog DscD => hypothetical protein
[11:01:53] Modify product: Probable lipoprotein YiaD precursor => putative lipoprotein YiaD precursor
[11:01:53] Modify product: Uncharacterized ABC transporter ATP-binding protein YjjK => putative ABC transporter ATP-binding protein YjjK
[11:01:53] Modify product: Probable metallo-hydrolase BURPS1710b_2304 => putative metallo-hydrolase
[11:01:54] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:54] Modify product: Probable periplasmic serine endoprotease DegP-like precursor => putative periplasmic serine endoprotease DegP-like precursor
[11:01:54] Modify product: Uncharacterized oxidoreductase ORF5 in fasciation locus => putative oxidoreductase ORF5 in fasciation locus
[11:01:54] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:54] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:54] Modify product: Probable thiol peroxidase => putative thiol peroxidase
[11:01:54] Modify product: Probable thiol:disulfide interchange protein DsbC precursor => putative thiol:disulfide interchange protein DsbC precursor
[11:01:54] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_1087 => putative ABC transporter ATP-binding protein
[11:01:54] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_0658 => putative ABC transporter ATP-binding protein
[11:01:54] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:54] Modify product: Probable 3-hydroxybutyryl-CoA dehydrogenase => putative 3-hydroxybutyryl-CoA dehydrogenase
[11:01:54] Modify product: Probable diguanylate cyclase YdaM => putative diguanylate cyclase YdaM
[11:01:54] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:55] Modify product: Purine-binding protein BAB2_0673 precursor => Purine-binding protein precursor
[11:01:55] Modify product: Probable N-succinyldiaminopimelate aminotransferase DapC => putative N-succinyldiaminopimelate aminotransferase DapC
[11:01:56] Modify product: Uncharacterized peptidase SA1530 => putative peptidase
[11:01:56] Modify product: Putative cystathionine beta-synthase Rv1077 => Putative cystathionine beta-synthase
[11:01:56] Modify product: Probable 2,4-dienoyl-CoA reductase => putative 2,4-dienoyl-CoA reductase
[11:01:56] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:56] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[11:01:57] Modify product: Putative DNA ligase-like protein Rv0938/MT0965 => Putative DNA ligase-like protein/MT0965
[11:01:57] Modify product: Probable glycine dehydrogenase (decarboxylating) subunit 2 => putative glycine dehydrogenase (decarboxylating) subunit 2
[11:01:57] Modify product: Probable tRNA (adenine(37)-N6)-methyltransferase => putative tRNA (adenine(37)-N6)-methyltransferase
[11:01:57] Modify product: Probable 3-hydroxyacyl-CoA dehydrogenase => putative 3-hydroxyacyl-CoA dehydrogenase
[11:01:57] Modify product: Phosphate-specific transport system accessory protein PhoU homolog => hypothetical protein
[11:01:57] Modify product: Uncharacterized ABC transporter permease YknZ => putative ABC transporter permease YknZ
[11:01:57] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
[11:01:57] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:58] Modify product: Probable xanthine dehydrogenase subunit D => putative xanthine dehydrogenase subunit D
[11:01:58] Modify product: Uncharacterized ABC transporter ATP-binding protein YbhF => putative ABC transporter ATP-binding protein YbhF
[11:01:58] Modify product: Bactoprenol glucosyl transferase homolog from prophage CPS-53 => hypothetical protein
[11:01:58] Modify product: Uncharacterized oxidoreductase YghA => putative oxidoreductase YghA
[11:01:58] Modify product: Putative short-chain type dehydrogenase/reductase MSMEG_6031/MSMEI_5872 => Putative short-chain type dehydrogenase/reductase/MSMEI_5872
[11:01:58] Modify product: Probable malonic semialdehyde reductase RutE => putative malonic semialdehyde reductase RutE
[11:01:59] Modify product: Probable lipoprotein YiaD precursor => putative lipoprotein YiaD precursor
[11:01:59] Modify product: PKHD-type hydroxylase Sbal_3634 => PKHD-type hydroxylase
[11:01:59] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[11:01:59] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[11:01:59] Modify product: Uncharacterized ABC transporter ATP-binding protein HI_1252 => putative ABC transporter ATP-binding protein
[11:02:00] Modify product: Probable metallo-hydrolase BURPS1710b_2304 => putative metallo-hydrolase
[11:02:00] Modify product: Probable tartrate dehydrogenase/decarboxylase TtuC' => putative tartrate dehydrogenase/decarboxylase TtuC'
[11:02:01] Modify product: Nucleoid-associated protein HI_0442 => Nucleoid-associated protein
[11:02:01] Modify product: Putative acyltransferase Rv0859 => Putative acyltransferase
[11:02:01] Modify product: Nucleoid-associated protein Cthe_2143 => Nucleoid-associated protein
[11:02:01] Modify product: N utilization substance protein B homolog => hypothetical protein
[11:02:01] Modify product: Probable thiol peroxidase => putative thiol peroxidase
[11:02:01] Modify product: Probable tartrate dehydrogenase/decarboxylase TtuC' => putative tartrate dehydrogenase/decarboxylase TtuC'
[11:02:01] Modify product: Uncharacterized oxidoreductase UxuB => putative oxidoreductase UxuB
[11:02:01] Modify product: Nucleoid-associated protein Cthe_2143 => Nucleoid-associated protein
[11:02:01] Modify product: Uncharacterized deoxyribonuclease YcfH => putative deoxyribonuclease YcfH
[11:02:02] Modify product: Probable sensor-like histidine kinase YedV => putative sensor-like histidine kinase YedV
[11:02:02] Modify product: Cysteine synthase homolog DscD => hypothetical protein
[11:02:03] Modify product: Probable enoyl-CoA hydratase echA8 => putative enoyl-CoA hydratase echA8
[11:02:03] Modify product: Phosphate-specific transport system accessory protein PhoU homolog 2 => hypothetical protein
[11:02:03] Modify product: Transcription termination factor Rho => hypothetical protein
[11:02:03] Cleaned 346 /product names
[11:02:03] Deleting unwanted file: REGE2/sprot.faa
[11:02:03] Deleting unwanted file: REGE2/sprot.blast

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig020730]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig030733]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig059616]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig062648]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig068877]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig083997]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig107720]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig109984]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig136197]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139017]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139985]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig140645]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig148449]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig151768]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig154514]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig171061]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig226321]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig233516]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig347824]: Terminator codon inside CDS!
---------------------------------------------------
[11:02:18] There are still 27303 unannotated CDS left (started with 33012)
[11:02:18] Will use hmmer3 to search against /opt/tools/prokka/bin/../db/hmm/CLUSTERS.hmm with 8 CPUs
[11:02:18] Running: cat REGE2\/CLUSTERS\.hmm\.faa | parallel --gnu --plain -j 8 --block 123947 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /opt/tools/prokka/bin/../db/hmm/CLUSTERS.hmm /dev/stdin > REGE2\/CLUSTERS\.hmm\.hmmer3 2> /dev/null
[11:52:15] Modify product: fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain => fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein
[11:52:21] Modify product: putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase => putative 23S rRNA ribose 2'-O-ribose methyltransferase
[11:52:29] Cleaned 2 /product names
[11:52:29] Deleting unwanted file: REGE2/CLUSTERS.hmm.faa
[11:52:29] Deleting unwanted file: REGE2/CLUSTERS.hmm.hmmer3

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig020730]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig030733]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig059616]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig062648]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig068877]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig083997]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig107720]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig109984]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig136197]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139017]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139985]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig140645]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig148449]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig151768]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig154514]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig171061]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig226321]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig233516]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig347824]: Terminator codon inside CDS!
---------------------------------------------------
[11:52:44] There are still 25568 unannotated CDS left (started with 33012)
[11:52:44] Will use hmmer3 to search against /opt/tools/prokka/bin/../db/hmm/HAMAP.hmm with 8 CPUs
[11:52:44] Running: cat REGE2\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 8 --block 115884 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /opt/tools/prokka/bin/../db/hmm/HAMAP.hmm /dev/stdin > REGE2\/HAMAP\.hmm\.hmmer3 2> /dev/null
[12:08:53] Deleting unwanted file: REGE2/HAMAP.hmm.faa
[12:08:53] Deleting unwanted file: REGE2/HAMAP.hmm.hmmer3

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig020730]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig030733]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig059616]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig062648]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig068877]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig083997]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig107720]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig109984]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig136197]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139017]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig139985]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig140645]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig148449]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig151768]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig154514]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig171061]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig226321]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig233516]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [gnl|goettingen|locustag_contig347824]: Terminator codon inside CDS!
---------------------------------------------------
[12:09:08] There are still 25396 unannotated CDS left (started with 33012)
[12:09:08] Will use hmmer3 to search against /opt/tools/prokka/bin/../db/hmm/Pfam.hmm with 8 CPUs
[12:09:08] Running: cat REGE2\/Pfam\.hmm\.faa | parallel --gnu --plain -j 8 --block 115099 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /opt/tools/prokka/bin/../db/hmm/Pfam.hmm /dev/stdin > REGE2\/Pfam\.hmm\.hmmer3 2> /dev/null
[13:02:07] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:07] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:07] Modify product: Integrase core domain => Integrase core domain protein
[13:02:07] Modify product: Integrase core domain => Integrase core domain protein
[13:02:07] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:07] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:07] Modify product: Integrase core domain => Integrase core domain protein
[13:02:07] Modify product: NMT1/THI5 like => NMT1/THI5 like protein
[13:02:07] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:07] Modify product: NAD dependent epimerase/dehydratase family => NAD dependent epimerase/dehydratase family protein
[13:02:07] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:07] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:07] Modify product: HIRAN domain => HIRAN domain protein
[13:02:07] Modify product: Cupin domain => Cupin domain protein
[13:02:07] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:07] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:07] Modify product: Molydopterin dinucleotide binding domain => Molydopterin dinucleotide binding domain protein
[13:02:07] Modify product: MmgE/PrpD family => MmgE/PrpD family protein
[13:02:07] Modify product: Zinc ribbon domain => Zinc ribbon domain protein
[13:02:07] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:07] Modify product: Ankyrin repeat => Ankyrin repeat protein
[13:02:07] Modify product: Uracil DNA glycosylase superfamily => Uracil DNA glycosylase superfamily protein
[13:02:07] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:07] Modify product: Cysteine-rich secretory protein family => Cysteine-rich secretory protein family protein
[13:02:07] Modify product: ACT domain => ACT domain protein
[13:02:08] Modify product: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain => hypothetical protein
[13:02:08] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:08] Modify product: Cobalamin synthesis protein cobW C-terminal domain => hypothetical protein
[13:02:08] Modify product: MmgE/PrpD family => MmgE/PrpD family protein
[13:02:08] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:08] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:08] Modify product: FHA domain => FHA domain protein
[13:02:08] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:08] Modify product: YCII-related domain => YCII-related domain protein
[13:02:08] Modify product: ChrR Cupin-like domain => ChrR Cupin-like domain protein
[13:02:08] Modify product: LemA family => LemA family protein
[13:02:08] Modify product: Tripartite tricarboxylate transporter TctA family => Tripartite tricarboxylate transporter TctA family protein
[13:02:08] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:08] Modify product: NmrA-like family => NmrA-like family protein
[13:02:08] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:08] Modify product: PBS lyase HEAT-like repeat => PBS lyase HEAT-like repeat protein
[13:02:08] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:08] Modify product: CO dehydrogenase flavoprotein C-terminal domain => hypothetical protein
[13:02:08] Modify product: Metallo-beta-lactamase superfamily => Metallo-beta-lactamase superfamily protein
[13:02:08] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:08] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:08] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:08] Modify product: RDD family => RDD family protein
[13:02:08] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:08] Modify product: PAP2 superfamily => PAP2 superfamily protein
[13:02:08] Modify product: Tripartite tricarboxylate transporter TctA family => Tripartite tricarboxylate transporter TctA family protein
[13:02:08] Modify product: Methyltransferase domain => Methyltransferase domain protein
[13:02:08] Modify product: RmuC family => RmuC family protein
[13:02:08] Modify product: Cation transporting ATPase, C-terminus => hypothetical protein
[13:02:08] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:08] Modify product: PIN domain => PIN domain protein
[13:02:08] Modify product: YCII-related domain => YCII-related domain protein
[13:02:08] Modify product: Putative zinc ribbon domain => Putative zinc ribbon domain protein
[13:02:08] Modify product: Metallo-beta-lactamase superfamily => Metallo-beta-lactamase superfamily protein
[13:02:08] Modify product: Zinc ribbon domain => Zinc ribbon domain protein
[13:02:08] Modify product: Response regulator receiver domain => Response regulator receiver domain protein
[13:02:08] Modify product: PEGA domain => PEGA domain protein
[13:02:08] Modify product: RmlD substrate binding domain => RmlD substrate binding domain protein
[13:02:08] Modify product: SUA5 domain => SUA5 domain protein
[13:02:08] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:08] Modify product: TraB family => TraB family protein
[13:02:08] Modify product: TM2 domain => TM2 domain protein
[13:02:08] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:08] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:08] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:08] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:08] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:08] Modify product: Transposase IS66 family => Transposase IS66 family protein
[13:02:08] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:08] Modify product: VanZ like family => VanZ like family protein
[13:02:08] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:08] Modify product: YCII-related domain => YCII-related domain protein
[13:02:09] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:09] Modify product: YCII-related domain => YCII-related domain protein
[13:02:09] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:09] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:09] Modify product: FIST C domain => FIST C domain protein
[13:02:09] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:09] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:09] Modify product: PBP superfamily domain => PBP superfamily domain protein
[13:02:09] Modify product: Cyclic nucleotide-binding domain => Cyclic nucleotide-binding domain protein
[13:02:09] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:09] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:09] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:09] Modify product: Zinc ribbon domain => Zinc ribbon domain protein
[13:02:09] Modify product: Amidohydrolase family => Amidohydrolase family protein
[13:02:09] Modify product: PilZ domain => PilZ domain protein
[13:02:09] Modify product: FCD domain => FCD domain protein
[13:02:09] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:09] Modify product: Cupin domain => Cupin domain protein
[13:02:09] Modify product: SprT-like family => SprT-like family protein
[13:02:09] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:09] Modify product: Ankyrin repeat => Ankyrin repeat protein
[13:02:09] Modify product: Spore Coat Protein U domain => Spore Coat Protein U domain protein
[13:02:09] Modify product: SURF1 family => SURF1 family protein
[13:02:09] Modify product: C-methyltransferase C-terminal domain => hypothetical protein
[13:02:09] Modify product: MMPL family => MMPL family protein
[13:02:09] Modify product: TrkA-C domain => TrkA-C domain protein
[13:02:09] Modify product: Peptidase M16 inactive domain => Peptidase M16 inactive domain protein
[13:02:09] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:09] Modify product: PEGA domain => PEGA domain protein
[13:02:09] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:09] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:09] Modify product: CHRD domain => CHRD domain protein
[13:02:09] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:09] Modify product: MmgE/PrpD family => MmgE/PrpD family protein
[13:02:09] Modify product: AhpC/TSA family => AhpC/TSA family protein
[13:02:09] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:09] Modify product: LemA family => LemA family protein
[13:02:09] Modify product: Cupin domain => Cupin domain protein
[13:02:09] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:09] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:09] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:09] Modify product: Cupin domain => Cupin domain protein
[13:02:09] Modify product: Nitroreductase family => Nitroreductase family protein
[13:02:09] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:09] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:09] Modify product: Uracil DNA glycosylase superfamily => Uracil DNA glycosylase superfamily protein
[13:02:09] Modify product: NHL repeat => NHL repeat protein
[13:02:09] Modify product: Thioesterase superfamily => Thioesterase superfamily protein
[13:02:09] Modify product: Sortase family => Sortase family protein
[13:02:09] Modify product: GAF domain => GAF domain protein
[13:02:09] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:09] Modify product: CO dehydrogenase flavoprotein C-terminal domain => hypothetical protein
[13:02:09] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:09] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:09] Modify product: CHAT domain => CHAT domain protein
[13:02:09] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:09] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:09] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:09] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:09] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:09] Modify product: Glycine zipper 2TM domain => Glycine zipper 2TM domain protein
[13:02:09] Modify product: YGGT family => YGGT family protein
[13:02:09] Modify product: Spore Coat Protein U domain => Spore Coat Protein U domain protein
[13:02:09] Modify product: Tripartite tricarboxylate transporter TctA family => Tripartite tricarboxylate transporter TctA family protein
[13:02:09] Modify product: putative permease YjgP/YjgQ family => putative permease YjgP/YjgQ family protein
[13:02:09] Modify product: Ribonuclease BN-like family => Ribonuclease BN-like family protein
[13:02:09] Modify product: LysR substrate binding domain => LysR substrate binding domain protein
[13:02:09] Modify product: Transglutaminase-like superfamily => Transglutaminase-like superfamily protein
[13:02:09] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:09] Modify product: LemA family => LemA family protein
[13:02:09] Modify product: Putative nucleotidyltransferase substrate binding domain => Putative nucleotidyltransferase substrate binding domain protein
[13:02:09] Modify product: Histone deacetylase domain => Histone deacetylase domain protein
[13:02:09] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:09] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:09] Modify product: SpoVT / AbrB like domain => SpoVT / AbrB like domain protein
[13:02:09] Modify product: putative permease YjgP/YjgQ family => putative permease YjgP/YjgQ family protein
[13:02:09] Modify product: PAS fold => PAS fold protein
[13:02:09] Modify product: FG-GAP repeat => FG-GAP repeat protein
[13:02:09] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:09] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:09] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:10] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:10] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:10] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:10] Modify product: RDD family => RDD family protein
[13:02:10] Modify product: CO dehydrogenase flavoprotein C-terminal domain => hypothetical protein
[13:02:10] Modify product: Cupin domain => Cupin domain protein
[13:02:10] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:10] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:10] Modify product: NifU-like domain => NifU-like domain protein
[13:02:10] Modify product: DinB superfamily => DinB superfamily protein
[13:02:10] Modify product: PHB de-polymerase C-terminus => hypothetical protein
[13:02:10] Modify product: PAP2 superfamily => PAP2 superfamily protein
[13:02:10] Modify product: Copper type II ascorbate-dependent monooxygenase, C-terminal domain => hypothetical protein
[13:02:10] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:10] Modify product: PilZ domain => PilZ domain protein
[13:02:10] Modify product: Cupin domain => Cupin domain protein
[13:02:10] Modify product: putative permease YjgP/YjgQ family => putative permease YjgP/YjgQ family protein
[13:02:10] Modify product: SLBB domain => SLBB domain protein
[13:02:10] Modify product: VIT family => VIT family protein
[13:02:10] Modify product: Entericidin EcnA/B family => Entericidin EcnA/B family protein
[13:02:10] Modify product: Putative peptidoglycan binding domain => Putative peptidoglycan binding domain protein
[13:02:10] Modify product: Endonuclease/Exonuclease/phosphatase family => Endonuclease/Exonuclease/phosphatase family protein
[13:02:10] Modify product: CBS domain => CBS domain protein
[13:02:10] Modify product: PASTA domain => PASTA domain protein
[13:02:10] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:10] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:10] Modify product: Glycine zipper 2TM domain => Glycine zipper 2TM domain protein
[13:02:10] Modify product: Probable cobalt transporter subunit (CbtA) => putative cobalt transporter subunit (CbtA)
[13:02:10] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:10] Modify product: Cyclic nucleotide-binding domain => Cyclic nucleotide-binding domain protein
[13:02:10] Modify product: MlrC C-terminus => hypothetical protein
[13:02:10] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:10] Modify product: UTRA domain => UTRA domain protein
[13:02:10] Modify product: ETC complex I subunit conserved region => hypothetical protein
[13:02:10] Modify product: Activator of Hsp90 ATPase homolog 1-like protein => hypothetical protein
[13:02:10] Modify product: Cupin domain => Cupin domain protein
[13:02:10] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:10] Modify product: DinB superfamily => DinB superfamily protein
[13:02:10] Modify product: DsrE/DsrF-like family => DsrE/DsrF-like family protein
[13:02:10] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:10] Modify product: RmlD substrate binding domain => RmlD substrate binding domain protein
[13:02:10] Modify product: Phosphate transporter family => Phosphate transporter family protein
[13:02:10] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:10] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:10] Modify product: BON domain => BON domain protein
[13:02:10] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:10] Modify product: Permease family => Permease family protein
[13:02:10] Modify product: Cation transporting ATPase, C-terminus => hypothetical protein
[13:02:10] Modify product: LemA family => LemA family protein
[13:02:10] Modify product: Carboxyl transferase domain => Carboxyl transferase domain protein
[13:02:10] Modify product: BON domain => BON domain protein
[13:02:10] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:10] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:10] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:10] Modify product: PrkA serine protein kinase C-terminal domain => hypothetical protein
[13:02:10] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:10] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:11] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:11] Modify product: Cupin domain => Cupin domain protein
[13:02:11] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:11] Modify product: Glycine zipper 2TM domain => Glycine zipper 2TM domain protein
[13:02:11] Modify product: RDD family => RDD family protein
[13:02:11] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:11] Modify product: Prolyl oligopeptidase family => Prolyl oligopeptidase family protein
[13:02:11] Modify product: Flavodoxin-like fold => Flavodoxin-like fold protein
[13:02:11] Modify product: Entericidin EcnA/B family => Entericidin EcnA/B family protein
[13:02:11] Modify product: MAPEG family => MAPEG family protein
[13:02:11] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:11] Modify product: Transglycosylase SLT domain => Transglycosylase SLT domain protein
[13:02:11] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:11] Modify product: FHA domain => FHA domain protein
[13:02:11] Modify product: Tripartite tricarboxylate transporter TctA family => Tripartite tricarboxylate transporter TctA family protein
[13:02:11] Modify product: EVE domain => EVE domain protein
[13:02:11] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:11] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:11] Modify product: Ferritin-like domain => Ferritin-like domain protein
[13:02:11] Modify product: Nitroreductase family => Nitroreductase family protein
[13:02:11] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:11] Modify product: Cysteine-rich secretory protein family => Cysteine-rich secretory protein family protein
[13:02:11] Modify product: META domain => META domain protein
[13:02:11] Modify product: TOBE domain => TOBE domain protein
[13:02:11] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:11] Modify product: HAMP domain => HAMP domain protein
[13:02:11] Modify product: OST-HTH/LOTUS domain => OST-HTH/LOTUS domain protein
[13:02:11] Modify product: NifU-like domain => NifU-like domain protein
[13:02:11] Modify product: Acetamidase/Formamidase family => Acetamidase/Formamidase family protein
[13:02:11] Modify product: RmlD substrate binding domain => RmlD substrate binding domain protein
[13:02:11] Modify product: Mo-co oxidoreductase dimerisation domain => Mo-co oxidoreductase dimerisation domain protein
[13:02:11] Modify product: Cobalamin synthesis protein cobW C-terminal domain => hypothetical protein
[13:02:11] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:11] Modify product: Thioesterase superfamily => Thioesterase superfamily protein
[13:02:11] Modify product: Prolyl oligopeptidase family => Prolyl oligopeptidase family protein
[13:02:11] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:11] Modify product: OST-HTH/LOTUS domain => OST-HTH/LOTUS domain protein
[13:02:11] Modify product: CBS domain => CBS domain protein
[13:02:11] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:11] Modify product: PrkA serine protein kinase C-terminal domain => hypothetical protein
[13:02:11] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:11] Modify product: Bacteroidetes-Associated Carbohydrate-binding Often N-terminal => hypothetical protein
[13:02:11] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:11] Modify product: MmgE/PrpD family => MmgE/PrpD family protein
[13:02:11] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:11] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:11] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:11] Modify product: NfeD-like C-terminal, partner-binding => hypothetical protein
[13:02:11] Modify product: Stress responsive A/B Barrel Domain => Stress responsive A/B Barrel Domain protein
[13:02:11] Modify product: Acyl transferase domain => Acyl transferase domain protein
[13:02:11] Modify product: YGGT family => YGGT family protein
[13:02:11] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:11] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[13:02:11] Modify product: Alanine racemase, N-terminal domain => hypothetical protein
[13:02:11] Modify product: HIT domain => HIT domain protein
[13:02:11] Modify product: Rhodanese-like domain => Rhodanese-like domain protein
[13:02:11] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:11] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:11] Modify product: CBS domain => CBS domain protein
[13:02:12] Modify product: TOBE domain => TOBE domain protein
[13:02:12] Modify product: Acetyl-CoA dehydrogenase C-terminal like => hypothetical protein
[13:02:12] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:12] Modify product: WLM domain => WLM domain protein
[13:02:12] Modify product: Amidohydrolase family => Amidohydrolase family protein
[13:02:12] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:12] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:12] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:12] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:12] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:12] Modify product: DinB family => DinB family protein
[13:02:12] Modify product: Nitroreductase family => Nitroreductase family protein
[13:02:12] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:12] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:12] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:12] Modify product: YCII-related domain => YCII-related domain protein
[13:02:12] Modify product: Histone deacetylase domain => Histone deacetylase domain protein
[13:02:12] Modify product: YGGT family => YGGT family protein
[13:02:12] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:12] Modify product: YCII-related domain => YCII-related domain protein
[13:02:12] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:12] Modify product: Cupin domain => Cupin domain protein
[13:02:12] Modify product: CBS domain => CBS domain protein
[13:02:12] Modify product: Transposase DDE domain => Transposase DDE domain protein
[13:02:12] Modify product: FHA domain => FHA domain protein
[13:02:12] Modify product: Tim44-like domain => Tim44-like domain protein
[13:02:12] Modify product: UvrB/uvrC motif => UvrB/uvrC motif protein
[13:02:12] Modify product: Fumarase C-terminus => hypothetical protein
[13:02:12] Modify product: Copper type II ascorbate-dependent monooxygenase, C-terminal domain => hypothetical protein
[13:02:12] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:12] Modify product: MlrC C-terminus => hypothetical protein
[13:02:12] Modify product: Glycosyl hydrolases family 38 C-terminal domain => hypothetical protein
[13:02:12] Modify product: Ankyrin repeat => Ankyrin repeat protein
[13:02:12] Modify product: Regulator of chromosome condensation (RCC1) repeat => Regulator of chromosome condensation (RCC1) repeat protein
[13:02:12] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:12] Modify product: WD40-like Beta Propeller Repeat => WD40-like Beta Propeller Repeat protein
[13:02:12] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:12] Modify product: STAS domain => STAS domain protein
[13:02:12] Modify product: DegT/DnrJ/EryC1/StrS aminotransferase family => DegT/DnrJ/EryC1/StrS aminotransferase family protein
[13:02:12] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:12] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:12] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:12] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:12] Modify product: CO dehydrogenase flavoprotein C-terminal domain => hypothetical protein
[13:02:12] Modify product: LytTr DNA-binding domain => LytTr DNA-binding domain protein
[13:02:12] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:13] Modify product: Formiminotransferase domain => Formiminotransferase domain protein
[13:02:13] Modify product: Glutathione S-transferase, C-terminal domain => hypothetical protein
[13:02:13] Modify product: domain => domain protein
[13:02:13] Modify product: Cupin domain => Cupin domain protein
[13:02:13] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:13] Modify product: TrkA-C domain => TrkA-C domain protein
[13:02:13] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:13] Modify product: CBS domain => CBS domain protein
[13:02:13] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:13] Modify product: LytTr DNA-binding domain => LytTr DNA-binding domain protein
[13:02:13] Modify product: CBS domain => CBS domain protein
[13:02:13] Modify product: LemA family => LemA family protein
[13:02:13] Modify product: YGGT family => YGGT family protein
[13:02:13] Modify product: Prolyl oligopeptidase family => Prolyl oligopeptidase family protein
[13:02:13] Modify product: TOBE domain => TOBE domain protein
[13:02:13] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:13] Modify product: Bacterial membrane flanked domain => Bacterial membrane flanked domain protein
[13:02:13] Modify product: MoeA C-terminal region (domain IV) => hypothetical protein
[13:02:13] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:13] Modify product: GSCFA family => GSCFA family protein
[13:02:13] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:13] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:13] Modify product: DinB family => DinB family protein
[13:02:13] Modify product: PAP2 superfamily => PAP2 superfamily protein
[13:02:13] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:13] Modify product: Tim44-like domain => Tim44-like domain protein
[13:02:13] Modify product: LysR substrate binding domain => LysR substrate binding domain protein
[13:02:13] Modify product: SpoVT / AbrB like domain => SpoVT / AbrB like domain protein
[13:02:13] Modify product: Isochorismatase family => Isochorismatase family protein
[13:02:13] Modify product: FHA domain => FHA domain protein
[13:02:13] Modify product: Entericidin EcnA/B family => Entericidin EcnA/B family protein
[13:02:13] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:13] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:13] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:13] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:13] Modify product: SCP-2 sterol transfer family => SCP-2 sterol transfer family protein
[13:02:13] Modify product: Oxidoreductase molybdopterin binding domain => Oxidoreductase molybdopterin binding domain protein
[13:02:13] Modify product: Zinc-finger domain => Zinc-finger domain protein
[13:02:13] Modify product: Stress responsive A/B Barrel Domain => Stress responsive A/B Barrel Domain protein
[13:02:13] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:13] Modify product: LemA family => LemA family protein
[13:02:13] Modify product: Cupin domain => Cupin domain protein
[13:02:13] Modify product: Cupin domain => Cupin domain protein
[13:02:14] Modify product: PASTA domain => PASTA domain protein
[13:02:14] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:14] Modify product: Cyclic nucleotide-binding domain => Cyclic nucleotide-binding domain protein
[13:02:14] Modify product: Transglycosylase SLT domain => Transglycosylase SLT domain protein
[13:02:14] Modify product: AhpC/TSA family => AhpC/TSA family protein
[13:02:14] Modify product: Putative peptidoglycan binding domain => Putative peptidoglycan binding domain protein
[13:02:14] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:14] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:14] Modify product: Sodium:dicarboxylate symporter family => Sodium:dicarboxylate symporter family protein
[13:02:14] Modify product: LysR substrate binding domain => LysR substrate binding domain protein
[13:02:14] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:14] Modify product: Phosphate transporter family => Phosphate transporter family protein
[13:02:14] Modify product: SLBB domain => SLBB domain protein
[13:02:14] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:14] Modify product: TspO/MBR family => TspO/MBR family protein
[13:02:14] Modify product: Elongation factor G C-terminus => hypothetical protein
[13:02:14] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:14] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:14] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:14] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:14] Modify product: LysR substrate binding domain => LysR substrate binding domain protein
[13:02:14] Modify product: CBS domain => CBS domain protein
[13:02:14] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:14] Modify product: Cyclic nucleotide-binding domain => Cyclic nucleotide-binding domain protein
[13:02:14] Modify product: Molydopterin dinucleotide binding domain => Molydopterin dinucleotide binding domain protein
[13:02:14] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:14] Modify product: SpoVT / AbrB like domain => SpoVT / AbrB like domain protein
[13:02:14] Modify product: YCII-related domain => YCII-related domain protein
[13:02:14] Modify product: YGGT family => YGGT family protein
[13:02:14] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:14] Modify product: Cupin domain => Cupin domain protein
[13:02:14] Modify product: YCII-related domain => YCII-related domain protein
[13:02:14] Modify product: TOBE domain => TOBE domain protein
[13:02:14] Modify product: Response regulator receiver domain => Response regulator receiver domain protein
[13:02:14] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:14] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:14] Modify product: MOSC domain => MOSC domain protein
[13:02:14] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:14] Modify product: Stress responsive A/B Barrel Domain => Stress responsive A/B Barrel Domain protein
[13:02:14] Modify product: Putative zinc ribbon domain => Putative zinc ribbon domain protein
[13:02:14] Modify product: LemA family => LemA family protein
[13:02:14] Modify product: SpoVT / AbrB like domain => SpoVT / AbrB like domain protein
[13:02:14] Modify product: Fasciclin domain => Fasciclin domain protein
[13:02:14] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:14] Modify product: LemA family => LemA family protein
[13:02:14] Modify product: NPCBM/NEW2 domain => NPCBM/NEW2 domain protein
[13:02:14] Modify product: Ribonuclease BN-like family => Ribonuclease BN-like family protein
[13:02:14] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:14] Modify product: Ankyrin repeat => Ankyrin repeat protein
[13:02:14] Modify product: MaoC like domain => MaoC like domain protein
[13:02:14] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:14] Modify product: Nucleotidyltransferase substrate binding protein like => Nucleotidyltransferase substrate binding protein like protein
[13:02:14] Modify product: CBS domain => CBS domain protein
[13:02:14] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:15] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:15] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:15] Modify product: YHS domain => YHS domain protein
[13:02:15] Modify product: BFD-like [2Fe-2S] binding domain => BFD-like [2Fe-2S] binding domain protein
[13:02:15] Modify product: Fumarylacetoacetate (FAA) hydrolase family => Fumarylacetoacetate (FAA) hydrolase family protein
[13:02:15] Modify product: LytTr DNA-binding domain => LytTr DNA-binding domain protein
[13:02:15] Modify product: CBS domain => CBS domain protein
[13:02:15] Modify product: LemA family => LemA family protein
[13:02:15] Modify product: Prolyl oligopeptidase family => Prolyl oligopeptidase family protein
[13:02:15] Modify product: CBS domain => CBS domain protein
[13:02:15] Modify product: Putative peptidoglycan binding domain => Putative peptidoglycan binding domain protein
[13:02:15] Modify product: Ankyrin repeat => Ankyrin repeat protein
[13:02:15] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:15] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:15] Modify product: Putative peptidoglycan binding domain => Putative peptidoglycan binding domain protein
[13:02:15] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:15] Modify product: Ppx/GppA phosphatase family => Ppx/GppA phosphatase family protein
[13:02:15] Modify product: FHA domain => FHA domain protein
[13:02:15] Modify product: PEP-CTERM motif => PEP-CTERM motif protein
[13:02:15] Modify product: GYD domain => GYD domain protein
[13:02:15] Modify product: CBS domain => CBS domain protein
[13:02:15] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:15] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:15] Modify product: Bacterial SH3 domain => Bacterial SH3 domain protein
[13:02:15] Modify product: CBS domain => CBS domain protein
[13:02:15] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:15] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:15] Modify product: ArsC family => ArsC family protein
[13:02:15] Modify product: Phosphate transporter family => Phosphate transporter family protein
[13:02:15] Modify product: Inositol monophosphatase family => Inositol monophosphatase family protein
[13:02:15] Modify product: Ferritin-like domain => Ferritin-like domain protein
[13:02:15] Modify product: CBS domain => CBS domain protein
[13:02:15] Modify product: YCII-related domain => YCII-related domain protein
[13:02:15] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:15] Modify product: CHRD domain => CHRD domain protein
[13:02:15] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:15] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:15] Modify product: MarR family => MarR family protein
[13:02:15] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:15] Modify product: Amidohydrolase family => Amidohydrolase family protein
[13:02:15] Modify product: Putative sugar-binding domain => Putative sugar-binding domain protein
[13:02:15] Modify product: ChrR Cupin-like domain => ChrR Cupin-like domain protein
[13:02:15] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:15] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:15] Modify product: Putative zinc ribbon domain => Putative zinc ribbon domain protein
[13:02:15] Modify product: YceI-like domain => YceI-like domain protein
[13:02:15] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:15] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:16] Modify product: AcrB/AcrD/AcrF family => AcrB/AcrD/AcrF family protein
[13:02:16] Modify product: Lipid A Biosynthesis N-terminal domain => hypothetical protein
[13:02:16] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:16] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:16] Modify product: RibD C-terminal domain => hypothetical protein
[13:02:16] Modify product: YCII-related domain => YCII-related domain protein
[13:02:16] Modify product: TraB family => TraB family protein
[13:02:16] Modify product: MoeA C-terminal region (domain IV) => hypothetical protein
[13:02:16] Modify product: Chalcone and stilbene synthases, C-terminal domain => hypothetical protein
[13:02:16] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:16] Modify product: R3H domain => R3H domain protein
[13:02:16] Modify product: Response regulator receiver domain => Response regulator receiver domain protein
[13:02:16] Modify product: Fasciclin domain => Fasciclin domain protein
[13:02:16] Modify product: LytTr DNA-binding domain => LytTr DNA-binding domain protein
[13:02:16] Modify product: alpha/beta hydrolase fold => alpha/beta hydrolase fold protein
[13:02:16] Modify product: Uracil DNA glycosylase superfamily => Uracil DNA glycosylase superfamily protein
[13:02:16] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:16] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:16] Modify product: Histone deacetylase domain => Histone deacetylase domain protein
[13:02:16] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:16] Modify product: Vitamin K epoxide reductase family => Vitamin K epoxide reductase family protein
[13:02:16] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:16] Modify product: YbaK / prolyl-tRNA synthetases associated domain => YbaK / prolyl-tRNA synthetases associated domain protein
[13:02:16] Modify product: Glycerophosphoryl diester phosphodiesterase family => Glycerophosphoryl diester phosphodiesterase family protein
[13:02:16] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:16] Modify product: Sel1 repeat => Sel1 repeat protein
[13:02:16] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:16] Modify product: Sodium:alanine symporter family => Sodium:alanine symporter family protein
[13:02:16] Modify product: STAS domain => STAS domain protein
[13:02:16] Modify product: MgsA AAA+ ATPase C terminal => hypothetical protein
[13:02:16] Modify product: Cupin domain => Cupin domain protein
[13:02:16] Modify product: CBS domain => CBS domain protein
[13:02:16] Modify product: Transglycosylase SLT domain => Transglycosylase SLT domain protein
[13:02:16] Modify product: CBS domain => CBS domain protein
[13:02:16] Modify product: 4-hydroxyphenylacetate 3-hydroxylase C terminal => hypothetical protein
[13:02:16] Modify product: C-terminal domain of 1-Cys peroxiredoxin => hypothetical protein
[13:02:16] Modify product: NifU-like domain => NifU-like domain protein
[13:02:16] Modify product: Alanine racemase, N-terminal domain => hypothetical protein
[13:02:16] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:16] Modify product: Sodium:alanine symporter family => Sodium:alanine symporter family protein
[13:02:16] Modify product: Oxidoreductase molybdopterin binding domain => Oxidoreductase molybdopterin binding domain protein
[13:02:16] Modify product: AhpC/TSA family => AhpC/TSA family protein
[13:02:17] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:17] Modify product: Integral membrane protein TerC family => Integral membrane protein TerC family protein
[13:02:17] Modify product: Ankyrin repeat => Ankyrin repeat protein
[13:02:17] Modify product: Glycine zipper 2TM domain => Glycine zipper 2TM domain protein
[13:02:17] Modify product: EAL domain => EAL domain protein
[13:02:17] Modify product: RuvA, C-terminal domain => hypothetical protein
[13:02:17] Modify product: BON domain => BON domain protein
[13:02:17] Modify product: CHAT domain => CHAT domain protein
[13:02:17] Modify product: 4-hydroxyphenylacetate 3-hydroxylase C terminal => hypothetical protein
[13:02:17] Modify product: Alanine racemase, N-terminal domain => hypothetical protein
[13:02:17] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:17] Modify product: UvrB/uvrC motif => UvrB/uvrC motif protein
[13:02:17] Modify product: TOBE domain => TOBE domain protein
[13:02:17] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:17] Modify product: Transcriptional regulatory protein, C terminal => hypothetical protein
[13:02:17] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:17] Modify product: ENTH domain => ENTH domain protein
[13:02:17] Modify product: Cysteine-rich secretory protein family => Cysteine-rich secretory protein family protein
[13:02:17] Modify product: Sel1 repeat => Sel1 repeat protein
[13:02:17] Modify product: Cupin domain => Cupin domain protein
[13:02:17] Modify product: Bacterial type II secretion system protein F domain => Bacterial type II secretion system protein F domain protein
[13:02:17] Modify product: FCD domain => FCD domain protein
[13:02:17] Modify product: MAPEG family => MAPEG family protein
[13:02:17] Modify product: Sporulation related domain => Sporulation related domain protein
[13:02:17] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:17] Modify product: Calx-beta domain => Calx-beta domain protein
[13:02:17] Modify product: MacB-like periplasmic core domain => MacB-like periplasmic core domain protein
[13:02:17] Modify product: CBS domain => CBS domain protein
[13:02:17] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:17] Modify product: Tripartite tricarboxylate transporter TctB family => Tripartite tricarboxylate transporter TctB family protein
[13:02:17] Modify product: Pyrrolo-quinoline quinone coenzyme N-terminus => hypothetical protein
[13:02:17] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:17] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:17] Modify product: RibD C-terminal domain => hypothetical protein
[13:02:17] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:17] Modify product: CBS domain => CBS domain protein
[13:02:17] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:17] Modify product: ZipA, C-terminal FtsZ-binding domain => hypothetical protein
[13:02:17] Modify product: Cupin domain => Cupin domain protein
[13:02:17] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:17] Modify product: Pyridoxal-dependent decarboxylase, C-terminal sheet domain => hypothetical protein
[13:02:17] Modify product: MazG nucleotide pyrophosphohydrolase domain => MazG nucleotide pyrophosphohydrolase domain protein
[13:02:17] Modify product: CBS domain => CBS domain protein
[13:02:17] Modify product: MobA-like NTP transferase domain => MobA-like NTP transferase domain protein
[13:02:17] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:17] Modify product: Sortase family => Sortase family protein
[13:02:17] Modify product: Phosphate transporter family => Phosphate transporter family protein
[13:02:18] Modify product: Transcriptional regulatory protein, C terminal => hypothetical protein
[13:02:18] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:18] Modify product: YCII-related domain => YCII-related domain protein
[13:02:18] Modify product: MoeA C-terminal region (domain IV) => hypothetical protein
[13:02:18] Modify product: MaoC like domain => MaoC like domain protein
[13:02:18] Modify product: Kelch motif => Kelch motif protein
[13:02:18] Modify product: Phosphate transporter family => Phosphate transporter family protein
[13:02:18] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:18] Modify product: UTRA domain => UTRA domain protein
[13:02:18] Modify product: TOBE domain => TOBE domain protein
[13:02:18] Modify product: CBS domain => CBS domain protein
[13:02:18] Modify product: MotA/TolQ/ExbB proton channel family => MotA/TolQ/ExbB proton channel family protein
[13:02:18] Modify product: PEGA domain => PEGA domain protein
[13:02:18] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:18] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:18] Modify product: CBS domain => CBS domain protein
[13:02:18] Modify product: Helix-hairpin-helix motif => Helix-hairpin-helix motif protein
[13:02:18] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:18] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:18] Modify product: AsnC family => AsnC family protein
[13:02:18] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:18] Modify product: 4Fe-4S dicluster domain => 4Fe-4S dicluster domain protein
[13:02:18] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:18] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:18] Modify product: Alanine racemase, N-terminal domain => hypothetical protein
[13:02:18] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:18] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:18] Modify product: LysR substrate binding domain => LysR substrate binding domain protein
[13:02:18] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:18] Modify product: WD40-like Beta Propeller Repeat => WD40-like Beta Propeller Repeat protein
[13:02:18] Modify product: Peptidase M10 serralysin C terminal => hypothetical protein
[13:02:18] Modify product: UvrB/uvrC motif => UvrB/uvrC motif protein
[13:02:18] Modify product: D-Ala-D-Ala carboxypeptidase 3 (S13) family => D-Ala-D-Ala carboxypeptidase 3 (S13) family protein
[13:02:18] Modify product: PHB de-polymerase C-terminus => hypothetical protein
[13:02:18] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:18] Modify product: Acetyl-CoA dehydrogenase C-terminal like => hypothetical protein
[13:02:18] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:18] Modify product: Berberine and berberine like => Berberine and berberine like protein
[13:02:18] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:18] Modify product: FtsX-like permease family => FtsX-like permease family protein
[13:02:18] Modify product: Cupin domain => Cupin domain protein
[13:02:19] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:19] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:19] Modify product: TspO/MBR family => TspO/MBR family protein
[13:02:19] Modify product: Bacterial SH3 domain => Bacterial SH3 domain protein
[13:02:19] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:19] Modify product: Penicillin-Binding Protein C-terminus Family => hypothetical protein
[13:02:19] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:19] Modify product: EVE domain => EVE domain protein
[13:02:19] Modify product: AcrB/AcrD/AcrF family => AcrB/AcrD/AcrF family protein
[13:02:19] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:19] Modify product: CO dehydrogenase flavoprotein C-terminal domain => hypothetical protein
[13:02:19] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:19] Modify product: Bacterial transcriptional activator domain => Bacterial transcriptional activator domain protein
[13:02:19] Modify product: Cupin domain => Cupin domain protein
[13:02:19] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:19] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:19] Modify product: Single-strand binding protein family => Single-strand binding protein family protein
[13:02:19] Modify product: FAD linked oxidases, C-terminal domain => hypothetical protein
[13:02:19] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:19] Modify product: CBS domain => CBS domain protein
[13:02:19] Modify product: SAF domain => SAF domain protein
[13:02:19] Modify product: CO dehydrogenase flavoprotein C-terminal domain => hypothetical protein
[13:02:19] Modify product: TraB family => TraB family protein
[13:02:19] Modify product: NfeD-like C-terminal, partner-binding => hypothetical protein
[13:02:19] Modify product: GYD domain => GYD domain protein
[13:02:19] Modify product: SpoVT / AbrB like domain => SpoVT / AbrB like domain protein
[13:02:19] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:19] Modify product: CBS domain => CBS domain protein
[13:02:19] Modify product: Ribbon-helix-helix domain => Ribbon-helix-helix domain protein
[13:02:19] Modify product: 4Fe-4S binding domain => 4Fe-4S binding domain protein
[13:02:19] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:19] Modify product: FAD linked oxidases, C-terminal domain => hypothetical protein
[13:02:19] Modify product: LytTr DNA-binding domain => LytTr DNA-binding domain protein
[13:02:19] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:19] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:19] Modify product: R3H domain => R3H domain protein
[13:02:19] Modify product: BON domain => BON domain protein
[13:02:19] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:19] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:19] Modify product: Dienelactone hydrolase family => Dienelactone hydrolase family protein
[13:02:19] Modify product: ETC complex I subunit conserved region => hypothetical protein
[13:02:19] Modify product: CBS domain => CBS domain protein
[13:02:19] Modify product: PspC domain => PspC domain protein
[13:02:20] Modify product: LytTr DNA-binding domain => LytTr DNA-binding domain protein
[13:02:20] Modify product: CBS domain => CBS domain protein
[13:02:20] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:20] Modify product: CBS domain => CBS domain protein
[13:02:20] Modify product: Bacterial type II secretion system protein F domain => Bacterial type II secretion system protein F domain protein
[13:02:20] Modify product: NIL domain => NIL domain protein
[13:02:20] Modify product: Fumarylacetoacetate (FAA) hydrolase family => Fumarylacetoacetate (FAA) hydrolase family protein
[13:02:20] Modify product: DsrE/DsrF-like family => DsrE/DsrF-like family protein
[13:02:20] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:20] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:20] Modify product: Glycosyl hydrolase family 3 C terminal domain => hypothetical protein
[13:02:20] Modify product: Stress responsive A/B Barrel Domain => Stress responsive A/B Barrel Domain protein
[13:02:20] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:20] Modify product: PAP2 superfamily => PAP2 superfamily protein
[13:02:20] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:20] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:20] Modify product: Prolyl oligopeptidase family => Prolyl oligopeptidase family protein
[13:02:20] Modify product: CsbD-like => CsbD-like protein
[13:02:20] Modify product: Alanine racemase, N-terminal domain => hypothetical protein
[13:02:20] Modify product: Ferritin-like domain => Ferritin-like domain protein
[13:02:20] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:20] Modify product: RuvA, C-terminal domain => hypothetical protein
[13:02:20] Modify product: SpoVT / AbrB like domain => SpoVT / AbrB like domain protein
[13:02:20] Modify product: CBS domain => CBS domain protein
[13:02:20] Modify product: 3D domain => 3D domain protein
[13:02:20] Modify product: YcaO-like family => YcaO-like family protein
[13:02:20] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:20] Modify product: Zinc-finger domain => Zinc-finger domain protein
[13:02:20] Modify product: FCD domain => FCD domain protein
[13:02:20] Modify product: Cupin domain => Cupin domain protein
[13:02:20] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:20] Modify product: ThiS family => ThiS family protein
[13:02:20] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:20] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:20] Modify product: Aldo/keto reductase family => Aldo/keto reductase family protein
[13:02:20] Modify product: FeoA domain => FeoA domain protein
[13:02:20] Modify product: Sortase family => Sortase family protein
[13:02:20] Modify product: Ribbon-helix-helix domain => Ribbon-helix-helix domain protein
[13:02:20] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:20] Modify product: DinB family => DinB family protein
[13:02:20] Modify product: Cytochrome C1 family => Cytochrome C1 family protein
[13:02:20] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:20] Modify product: Ribosomal protein L9, C-terminal domain => hypothetical protein
[13:02:20] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:20] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:20] Modify product: RuvA, C-terminal domain => hypothetical protein
[13:02:20] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:20] Modify product: Bacterial membrane flanked domain => Bacterial membrane flanked domain protein
[13:02:20] Modify product: Vitamin K epoxide reductase family => Vitamin K epoxide reductase family protein
[13:02:21] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:21] Modify product: DinB family => DinB family protein
[13:02:21] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:21] Modify product: SUA5 domain => SUA5 domain protein
[13:02:21] Modify product: CBS domain => CBS domain protein
[13:02:21] Modify product: PilZ domain => PilZ domain protein
[13:02:21] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:21] Modify product: Response regulator receiver domain => Response regulator receiver domain protein
[13:02:21] Modify product: Isochorismatase family => Isochorismatase family protein
[13:02:21] Modify product: TraB family => TraB family protein
[13:02:21] Modify product: MobA-like NTP transferase domain => MobA-like NTP transferase domain protein
[13:02:21] Modify product: Bacterial transcriptional activator domain => Bacterial transcriptional activator domain protein
[13:02:21] Modify product: FHA domain => FHA domain protein
[13:02:21] Modify product: BioY family => BioY family protein
[13:02:21] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:21] Modify product: Rdx family => Rdx family protein
[13:02:21] Modify product: Cobalamin synthesis protein cobW C-terminal domain => hypothetical protein
[13:02:21] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:21] Modify product: putative permease YjgP/YjgQ family => putative permease YjgP/YjgQ family protein
[13:02:21] Modify product: ThiS family => ThiS family protein
[13:02:21] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:21] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[13:02:21] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:21] Modify product: Transcriptional regulatory protein, C terminal => hypothetical protein
[13:02:21] Modify product: LemA family => LemA family protein
[13:02:21] Modify product: alpha/beta hydrolase fold => alpha/beta hydrolase fold protein
[13:02:21] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:21] Modify product: BON domain => BON domain protein
[13:02:21] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:21] Modify product: HRDC domain => HRDC domain protein
[13:02:21] Modify product: ArsC family => ArsC family protein
[13:02:21] Modify product: ANTAR domain => ANTAR domain protein
[13:02:21] Modify product: BON domain => BON domain protein
[13:02:21] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:21] Modify product: Glycine zipper 2TM domain => Glycine zipper 2TM domain protein
[13:02:21] Modify product: Oxidoreductase molybdopterin binding domain => Oxidoreductase molybdopterin binding domain protein
[13:02:21] Modify product: Zinc-finger domain => Zinc-finger domain protein
[13:02:21] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:21] Modify product: CHRD domain => CHRD domain protein
[13:02:21] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:21] Modify product: Acyl-CoA dehydrogenase, C-terminal domain => hypothetical protein
[13:02:21] Modify product: Hpt domain => Hpt domain protein
[13:02:21] Modify product: RDD family => RDD family protein
[13:02:21] Modify product: ChrR Cupin-like domain => ChrR Cupin-like domain protein
[13:02:21] Modify product: DSBA-like thioredoxin domain => DSBA-like thioredoxin domain protein
[13:02:21] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[13:02:21] Modify product: R3H domain => R3H domain protein
[13:02:21] Modify product: Cation transporting ATPase, C-terminus => hypothetical protein
[13:02:21] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:21] Modify product: MoeA C-terminal region (domain IV) => hypothetical protein
[13:02:21] Modify product: FHA domain => FHA domain protein
[13:02:22] Modify product: Transketolase, C-terminal domain => hypothetical protein
[13:02:22] Modify product: Biotin carboxylase C-terminal domain => hypothetical protein
[13:02:22] Modify product: Transcription elongation factor, GreA/GreB, C-term => hypothetical protein
[13:02:22] Modify product: Bacterial SH3 domain => Bacterial SH3 domain protein
[13:02:22] Modify product: SnoaL-like domain => SnoaL-like domain protein
[13:02:22] Modify product: FHA domain => FHA domain protein
[13:02:22] Modify product: Carboxymuconolactone decarboxylase family => Carboxymuconolactone decarboxylase family protein
[13:02:22] Modify product: ArsC family => ArsC family protein
[13:02:22] Modify product: LemA family => LemA family protein
[13:02:22] Modify product: Cation transporting ATPase, C-terminus => hypothetical protein
[13:02:22] Modify product: LemA family => LemA family protein
[13:02:22] Modify product: MAPEG family => MAPEG family protein
[13:02:22] Modify product: C-terminal domain of 1-Cys peroxiredoxin => hypothetical protein
[13:02:22] Modify product: MoeA C-terminal region (domain IV) => hypothetical protein
[13:02:22] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:22] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:22] Modify product: UvrB/uvrC motif => UvrB/uvrC motif protein
[13:02:22] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:22] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[13:02:22] Modify product: MucB/RseB family => MucB/RseB family protein
[13:02:22] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:22] Modify product: EAL domain => EAL domain protein
[13:02:22] Modify product: VIT family => VIT family protein
[13:02:22] Modify product: TOBE domain => TOBE domain protein
[13:02:22] Modify product: LemA family => LemA family protein
[13:02:22] Modify product: DNA gyrase C-terminal domain, beta-propeller => hypothetical protein
[13:02:22] Modify product: TilS substrate C-terminal domain => hypothetical protein
[13:02:22] Modify product: Transporter associated domain => Transporter associated domain protein
[13:02:22] Modify product: Universal stress protein family => Universal stress protein family protein
[13:02:22] Modify product: Leukotriene A4 hydrolase, C-terminal => hypothetical protein
[13:02:22] Modify product: CBS domain => CBS domain protein
[13:02:22] Modify product: D-galactarate dehydratase / Altronate hydrolase, C terminus => hypothetical protein
[13:02:22] Modify product: Hypoxia induced protein conserved region => hypothetical protein
[13:02:22] Modify product: BON domain => BON domain protein
[13:02:22] Modify product: Stress-induced bacterial acidophilic repeat motif => Stress-induced bacterial acidophilic repeat motif protein
[13:02:22] Modify product: HRDC domain => HRDC domain protein
[13:02:22] Modify product: Alanine racemase, N-terminal domain => hypothetical protein
[13:02:22] Modify product: Cytochrome b(N-terminal)/b6/petB => hypothetical protein
[13:02:22] Modify product: Pirin C-terminal cupin domain => hypothetical protein
[13:02:23] Modify product: CBS domain => CBS domain protein
[13:02:23] Modify product: Phosphate transporter family => Phosphate transporter family protein
[13:02:23] Modify product: Transcriptional regulator PadR-like family => Transcriptional regulator PadR-like family protein
[13:02:23] Modify product: Glyoxalase-like domain => Glyoxalase-like domain protein
[13:02:23] Modify product: Usg-like family => Usg-like family protein
[13:02:23] Modify product: HRDC domain => HRDC domain protein
[13:02:23] Modify product: CBS domain => CBS domain protein
[13:02:23] Modify product: LemA family => LemA family protein
[13:02:23] Modify product: Zc3h12a-like Ribonuclease NYN domain => Zc3h12a-like Ribonuclease NYN domain protein
[13:02:23] Modify product: Helix-turn-helix domain => Helix-turn-helix domain protein
[13:02:23] Modify product: AsnC family => AsnC family protein
[13:02:23] Modify product: TrkA-C domain => TrkA-C domain protein
[13:02:23] Modify product: Bacterial type II secretion system protein F domain => Bacterial type II secretion system protein F domain protein
[13:02:23] Modify product: EamA-like transporter family => EamA-like transporter family protein
[13:02:23] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[13:02:23] Modify product: DinB family => DinB family protein
[13:02:23] Modify product: RuvA, C-terminal domain => hypothetical protein
[13:02:23] Modify product: EVE domain => EVE domain protein
[13:02:23] Modify product: UvrB/uvrC motif => UvrB/uvrC motif protein
[13:02:23] Modify product: ANTAR domain => ANTAR domain protein
[13:02:23] Modify product: Cytochrome C1 family => Cytochrome C1 family protein
[13:02:23] Modify product: D-aminoacylase, C-terminal region => hypothetical protein
[13:02:23] Modify product: EVE domain => EVE domain protein
[13:02:23] Modify product: UvrB/uvrC motif => UvrB/uvrC motif protein
[13:02:23] Modify product: BON domain => BON domain protein
[13:02:23] Modify product: CBS domain => CBS domain protein
[13:02:23] Modify product: BON domain => BON domain protein
[13:02:23] Modify product: Fumarylacetoacetate (FAA) hydrolase family => Fumarylacetoacetate (FAA) hydrolase family protein
[13:02:23] Modify product: PEP-CTERM motif => PEP-CTERM motif protein
[13:02:23] Modify product: CBS domain => CBS domain protein
[13:02:23] Modify product: PEGA domain => PEGA domain protein
[13:02:23] Cleaned 808 /product names
[13:02:23] Deleting unwanted file: REGE2/Pfam.hmm.faa
[13:02:23] Deleting unwanted file: REGE2/Pfam.hmm.hmmer3
[13:02:25] Labelling remaining 23712 proteins as 'hypothetical protein'
[13:02:28] Found 1960 unique /gene codes.
[13:02:28] Fixed 12 duplicate /gene - ilvE_1 ilvE_2 ilvE_3 ilvE_4 ilvE_5 ilvE_6 ilvE_7 ilvE_8 ilvE_9 ilvE_10 ilvE_11 ilvE_12
[13:02:28] Fixed 2 duplicate /gene - fbiB_1 fbiB_2
[13:02:28] Fixed 2 duplicate /gene - ywrD_1 ywrD_2
[13:02:28] Fixed 2 duplicate /gene - glk_1 glk_2
[13:02:28] Fixed 2 duplicate /gene - rnfC_1 rnfC_2
[13:02:28] Fixed 2 duplicate /gene - gltA_1 gltA_2
[13:02:28] Fixed 2 duplicate /gene - tctD_1 tctD_2
[13:02:28] Fixed 2 duplicate /gene - rsmE_1 rsmE_2
[13:02:28] Fixed 2 duplicate /gene - bepD_1 bepD_2
[13:02:28] Fixed 2 duplicate /gene - tmoT_1 tmoT_2
[13:02:28] Fixed 3 duplicate /gene - fadE_1 fadE_2 fadE_3
[13:02:28] Fixed 2 duplicate /gene - coxL_1 coxL_2
[13:02:28] Fixed 2 duplicate /gene - mexB_1 mexB_2
[13:02:28] Fixed 2 duplicate /gene - idi_1 idi_2
[13:02:28] Fixed 2 duplicate /gene - glyQ_1 glyQ_2
[13:02:28] Fixed 6 duplicate /gene - nicB_1 nicB_2 nicB_3 nicB_4 nicB_5 nicB_6
[13:02:28] Fixed 2 duplicate /gene - pckG_1 pckG_2
[13:02:28] Fixed 2 duplicate /gene - lysDH_1 lysDH_2
[13:02:28] Fixed 6 duplicate /gene - pstB_1 pstB_2 pstB_3 pstB_4 pstB_5 pstB_6
[13:02:28] Fixed 3 duplicate /gene - ureG_1 ureG_2 ureG_3
[13:02:28] Fixed 2 duplicate /gene - tdk_1 tdk_2
[13:02:28] Fixed 4 duplicate /gene - ttuC'_1 ttuC'_2 ttuC'_3 ttuC'_4
[13:02:28] Fixed 3 duplicate /gene - rpsR_1 rpsR_2 rpsR_3
[13:02:28] Fixed 7 duplicate /gene - pyrG_1 pyrG_2 pyrG_3 pyrG_4 pyrG_5 pyrG_6 pyrG_7
[13:02:28] Fixed 3 duplicate /gene - proC_1 proC_2 proC_3
[13:02:28] Fixed 2 duplicate /gene - def1_1 def1_2
[13:02:28] Fixed 2 duplicate /gene - moeA_1 moeA_2
[13:02:28] Fixed 2 duplicate /gene - cytR_1 cytR_2
[13:02:28] Fixed 2 duplicate /gene - nuoH_1 nuoH_2
[13:02:28] Fixed 2 duplicate /gene - sdhB_1 sdhB_2
[13:02:28] Fixed 3 duplicate /gene - coaE_1 coaE_2 coaE_3
[13:02:28] Fixed 4 duplicate /gene - surA_1 surA_2 surA_3 surA_4
[13:02:28] Fixed 17 duplicate /gene - mmgC_1 mmgC_2 mmgC_3 mmgC_4 mmgC_5 mmgC_6 mmgC_7 mmgC_8 mmgC_9 mmgC_10 mmgC_11 mmgC_12 mmgC_13 mmgC_14 mmgC_15 mmgC_16 mmgC_17
[13:02:28] Fixed 3 duplicate /gene - ask_1 ask_2 ask_3
[13:02:28] Fixed 4 duplicate /gene - yacG_1 yacG_2 yacG_3 yacG_4
[13:02:28] Fixed 4 duplicate /gene - aroG_1 aroG_2 aroG_3 aroG_4
[13:02:28] Fixed 3 duplicate /gene - yedY_1 yedY_2 yedY_3
[13:02:28] Fixed 4 duplicate /gene - fccA_1 fccA_2 fccA_3 fccA_4
[13:02:28] Fixed 4 duplicate /gene - nhaA_1 nhaA_2 nhaA_3 nhaA_4
[13:02:28] Fixed 8 duplicate /gene - rplE_1 rplE_2 rplE_3 rplE_4 rplE_5 rplE_6 rplE_7 rplE_8
[13:02:28] Fixed 4 duplicate /gene - bamB_1 bamB_2 bamB_3 bamB_4
[13:02:28] Fixed 6 duplicate /gene - rpsH_1 rpsH_2 rpsH_3 rpsH_4 rpsH_5 rpsH_6
[13:02:28] Fixed 2 duplicate /gene - ttgI_1 ttgI_2
[13:02:28] Fixed 3 duplicate /gene - hemY_1 hemY_2 hemY_3
[13:02:28] Fixed 3 duplicate /gene - malQ_1 malQ_2 malQ_3
[13:02:28] Fixed 4 duplicate /gene - ruvA_1 ruvA_2 ruvA_3 ruvA_4
[13:02:28] Fixed 5 duplicate /gene - pcaG_1 pcaG_2 pcaG_3 pcaG_4 pcaG_5
[13:02:28] Fixed 2 duplicate /gene - ilvG_1 ilvG_2
[13:02:28] Fixed 2 duplicate /gene - nadB_1 nadB_2
[13:02:28] Fixed 3 duplicate /gene - cysK1_1 cysK1_2 cysK1_3
[13:02:28] Fixed 2 duplicate /gene - tsaE_1 tsaE_2
[13:02:28] Fixed 7 duplicate /gene - fadD_1 fadD_2 fadD_3 fadD_4 fadD_5 fadD_6 fadD_7
[13:02:28] Fixed 3 duplicate /gene - otsB_1 otsB_2 otsB_3
[13:02:28] Fixed 3 duplicate /gene - hisA_1 hisA_2 hisA_3
[13:02:28] Fixed 10 duplicate /gene - fbp_1 fbp_2 fbp_3 fbp_4 fbp_5 fbp_6 fbp_7 fbp_8 fbp_9 fbp_10
[13:02:28] Fixed 2 duplicate /gene - ghrA_1 ghrA_2
[13:02:28] Fixed 6 duplicate /gene - coaD_1 coaD_2 coaD_3 coaD_4 coaD_5 coaD_6
[13:02:28] Fixed 3 duplicate /gene - rhaR_1 rhaR_2 rhaR_3
[13:02:28] Fixed 6 duplicate /gene - mdlA_1 mdlA_2 mdlA_3 mdlA_4 mdlA_5 mdlA_6
[13:02:28] Fixed 9 duplicate /gene - leuC_1 leuC_2 leuC_3 leuC_4 leuC_5 leuC_6 leuC_7 leuC_8 leuC_9
[13:02:28] Fixed 4 duplicate /gene - murD_1 murD_2 murD_3 murD_4
[13:02:28] Fixed 2 duplicate /gene - pgdA_1 pgdA_2
[13:02:28] Fixed 5 duplicate /gene - era_1 era_2 era_3 era_4 era_5
[13:02:28] Fixed 3 duplicate /gene - moaA_1 moaA_2 moaA_3
[13:02:28] Fixed 3 duplicate /gene - sigR_1 sigR_2 sigR_3
[13:02:28] Fixed 4 duplicate /gene - tadA_1 tadA_2 tadA_3 tadA_4
[13:02:28] Fixed 4 duplicate /gene - mccB_1 mccB_2 mccB_3 mccB_4
[13:02:28] Fixed 5 duplicate /gene - kdsD_1 kdsD_2 kdsD_3 kdsD_4 kdsD_5
[13:02:28] Fixed 7 duplicate /gene - guaB_1 guaB_2 guaB_3 guaB_4 guaB_5 guaB_6 guaB_7
[13:02:28] Fixed 2 duplicate /gene - rbr_1 rbr_2
[13:02:28] Fixed 5 duplicate /gene - rpsK_1 rpsK_2 rpsK_3 rpsK_4 rpsK_5
[13:02:28] Fixed 2 duplicate /gene - yhfP_1 yhfP_2
[13:02:28] Fixed 7 duplicate /gene - phbB_1 phbB_2 phbB_3 phbB_4 phbB_5 phbB_6 phbB_7
[13:02:28] Fixed 3 duplicate /gene - rfbF_1 rfbF_2 rfbF_3
[13:02:28] Fixed 6 duplicate /gene - prpB_1 prpB_2 prpB_3 prpB_4 prpB_5 prpB_6
[13:02:28] Fixed 13 duplicate /gene - iorA_1 iorA_2 iorA_3 iorA_4 iorA_5 iorA_6 iorA_7 iorA_8 iorA_9 iorA_10 iorA_11 iorA_12 iorA_13
[13:02:28] Fixed 2 duplicate /gene - aldHT_1 aldHT_2
[13:02:28] Fixed 2 duplicate /gene - davD_1 davD_2
[13:02:28] Fixed 2 duplicate /gene - ihfB_1 ihfB_2
[13:02:28] Fixed 2 duplicate /gene - fliA_1 fliA_2
[13:02:28] Fixed 8 duplicate /gene - parE_1 parE_2 parE_3 parE_4 parE_5 parE_6 parE_7 parE_8
[13:02:28] Fixed 3 duplicate /gene - rlmN_1 rlmN_2 rlmN_3
[13:02:28] Fixed 2 duplicate /gene - ybdL_1 ybdL_2
[13:02:28] Fixed 2 duplicate /gene - kanE_1 kanE_2
[13:02:28] Fixed 3 duplicate /gene - hupB_1 hupB_2 hupB_3
[13:02:28] Fixed 4 duplicate /gene - smpB_1 smpB_2 smpB_3 smpB_4
[13:02:28] Fixed 2 duplicate /gene - sodB_1 sodB_2
[13:02:28] Fixed 4 duplicate /gene - folP_1 folP_2 folP_3 folP_4
[13:02:28] Fixed 2 duplicate /gene - nifA_1 nifA_2
[13:02:28] Fixed 2 duplicate /gene - fliQ_1 fliQ_2
[13:02:28] Fixed 7 duplicate /gene - ubiE_1 ubiE_2 ubiE_3 ubiE_4 ubiE_5 ubiE_6 ubiE_7
[13:02:28] Fixed 5 duplicate /gene - atpC_1 atpC_2 atpC_3 atpC_4 atpC_5
[13:02:28] Fixed 2 duplicate /gene - cmpR_1 cmpR_2
[13:02:28] Fixed 3 duplicate /gene - pyrD_1 pyrD_2 pyrD_3
[13:02:28] Fixed 5 duplicate /gene - nifU_1 nifU_2 nifU_3 nifU_4 nifU_5
[13:02:28] Fixed 9 duplicate /gene - mepM_1 mepM_2 mepM_3 mepM_4 mepM_5 mepM_6 mepM_7 mepM_8 mepM_9
[13:02:28] Fixed 11 duplicate /gene - dosP_1 dosP_2 dosP_3 dosP_4 dosP_5 dosP_6 dosP_7 dosP_8 dosP_9 dosP_10 dosP_11
[13:02:28] Fixed 3 duplicate /gene - glnL_1 glnL_2 glnL_3
[13:02:28] Fixed 6 duplicate /gene - glnA_1 glnA_2 glnA_3 glnA_4 glnA_5 glnA_6
[13:02:28] Fixed 10 duplicate /gene - der_1 der_2 der_3 der_4 der_5 der_6 der_7 der_8 der_9 der_10
[13:02:28] Fixed 2 duplicate /gene - serS_1 serS_2
[13:02:28] Fixed 2 duplicate /gene - fixJ_1 fixJ_2
[13:02:28] Fixed 2 duplicate /gene - cseB_1 cseB_2
[13:02:28] Fixed 2 duplicate /gene - gabD_1 gabD_2
[13:02:28] Fixed 6 duplicate /gene - ttuD_1 ttuD_2 ttuD_3 ttuD_4 ttuD_5 ttuD_6
[13:02:28] Fixed 6 duplicate /gene - qorA_1 qorA_2 qorA_3 qorA_4 qorA_5 qorA_6
[13:02:28] Fixed 2 duplicate /gene - hemE_1 hemE_2
[13:02:28] Fixed 4 duplicate /gene - ypdA_1 ypdA_2 ypdA_3 ypdA_4
[13:02:28] Fixed 6 duplicate /gene - rpoN_1 rpoN_2 rpoN_3 rpoN_4 rpoN_5 rpoN_6
[13:02:28] Fixed 2 duplicate /gene - hfq_1 hfq_2
[13:02:28] Fixed 3 duplicate /gene - katG_1 katG_2 katG_3
[13:02:28] Fixed 3 duplicate /gene - prmA_1 prmA_2 prmA_3
[13:02:28] Fixed 5 duplicate /gene - glgB_1 glgB_2 glgB_3 glgB_4 glgB_5
[13:02:28] Fixed 3 duplicate /gene - algC_1 algC_2 algC_3
[13:02:28] Fixed 2 duplicate /gene - mnaA_1 mnaA_2
[13:02:28] Fixed 5 duplicate /gene - ndk_1 ndk_2 ndk_3 ndk_4 ndk_5
[13:02:28] Fixed 2 duplicate /gene - ubiA_1 ubiA_2
[13:02:28] Fixed 9 duplicate /gene - murA_1 murA_2 murA_3 murA_4 murA_5 murA_6 murA_7 murA_8 murA_9
[13:02:28] Fixed 3 duplicate /gene - tmoS_1 tmoS_2 tmoS_3
[13:02:28] Fixed 2 duplicate /gene - csbB_1 csbB_2
[13:02:28] Fixed 5 duplicate /gene - kaiB_1 kaiB_2 kaiB_3 kaiB_4 kaiB_5
[13:02:28] Fixed 3 duplicate /gene - acyII_1 acyII_2 acyII_3
[13:02:28] Fixed 2 duplicate /gene - yedA_1 yedA_2
[13:02:28] Fixed 6 duplicate /gene - lon_1 lon_2 lon_3 lon_4 lon_5 lon_6
[13:02:28] Fixed 2 duplicate /gene - hisE_1 hisE_2
[13:02:28] Fixed 3 duplicate /gene - grxD_1 grxD_2 grxD_3
[13:02:28] Fixed 3 duplicate /gene - cbs_1 cbs_2 cbs_3
[13:02:28] Fixed 6 duplicate /gene - mlaC_1 mlaC_2 mlaC_3 mlaC_4 mlaC_5 mlaC_6
[13:02:28] Fixed 3 duplicate /gene - ilvD_1 ilvD_2 ilvD_3
[13:02:28] Fixed 4 duplicate /gene - mltB_1 mltB_2 mltB_3 mltB_4
[13:02:28] Fixed 5 duplicate /gene - bioF_1 bioF_2 bioF_3 bioF_4 bioF_5
[13:02:28] Fixed 2 duplicate /gene - exoA_1 exoA_2
[13:02:28] Fixed 2 duplicate /gene - rhaS_1 rhaS_2
[13:02:28] Fixed 11 duplicate /gene - gltB_1 gltB_2 gltB_3 gltB_4 gltB_5 gltB_6 gltB_7 gltB_8 gltB_9 gltB_10 gltB_11
[13:02:28] Fixed 6 duplicate /gene - pyrR_1 pyrR_2 pyrR_3 pyrR_4 pyrR_5 pyrR_6
[13:02:28] Fixed 4 duplicate /gene - frdA_1 frdA_2 frdA_3 frdA_4
[13:02:28] Fixed 2 duplicate /gene - asd2_1 asd2_2
[13:02:28] Fixed 2 duplicate /gene - yjcH_1 yjcH_2
[13:02:28] Fixed 3 duplicate /gene - wecA_1 wecA_2 wecA_3
[13:02:28] Fixed 3 duplicate /gene - priA_1 priA_2 priA_3
[13:02:28] Fixed 4 duplicate /gene - argS_1 argS_2 argS_3 argS_4
[13:02:28] Fixed 12 duplicate /gene - rpsQ_1 rpsQ_2 rpsQ_3 rpsQ_4 rpsQ_5 rpsQ_6 rpsQ_7 rpsQ_8 rpsQ_9 rpsQ_10 rpsQ_11 rpsQ_12
[13:02:28] Fixed 2 duplicate /gene - mycF_1 mycF_2
[13:02:28] Fixed 2 duplicate /gene - sodA_1 sodA_2
[13:02:28] Fixed 3 duplicate /gene - hemF_1 hemF_2 hemF_3
[13:02:28] Fixed 5 duplicate /gene - ftsK_1 ftsK_2 ftsK_3 ftsK_4 ftsK_5
[13:02:28] Fixed 3 duplicate /gene - mpl_1 mpl_2 mpl_3
[13:02:28] Fixed 2 duplicate /gene - ansA_1 ansA_2
[13:02:28] Fixed 3 duplicate /gene - rsmA_1 rsmA_2 rsmA_3
[13:02:28] Fixed 8 duplicate /gene - infC_1 infC_2 infC_3 infC_4 infC_5 infC_6 infC_7 infC_8
[13:02:28] Fixed 4 duplicate /gene - flK_1 flK_2 flK_3 flK_4
[13:02:28] Fixed 5 duplicate /gene - phoR_1 phoR_2 phoR_3 phoR_4 phoR_5
[13:02:28] Fixed 4 duplicate /gene - hpt_1 hpt_2 hpt_3 hpt_4
[13:02:28] Fixed 4 duplicate /gene - ald_1 ald_2 ald_3 ald_4
[13:02:28] Fixed 2 duplicate /gene - yahK_1 yahK_2
[13:02:28] Fixed 2 duplicate /gene - hyfB_1 hyfB_2
[13:02:28] Fixed 2 duplicate /gene - basR_1 basR_2
[13:02:28] Fixed 2 duplicate /gene - copA_1 copA_2
[13:02:28] Fixed 2 duplicate /gene - glcK_1 glcK_2
[13:02:28] Fixed 5 duplicate /gene - eno_1 eno_2 eno_3 eno_4 eno_5
[13:02:28] Fixed 7 duplicate /gene - rpsM_1 rpsM_2 rpsM_3 rpsM_4 rpsM_5 rpsM_6 rpsM_7
[13:02:28] Fixed 5 duplicate /gene - hisS_1 hisS_2 hisS_3 hisS_4 hisS_5
[13:02:28] Fixed 4 duplicate /gene - fliG_1 fliG_2 fliG_3 fliG_4
[13:02:28] Fixed 7 duplicate /gene - lysA_1 lysA_2 lysA_3 lysA_4 lysA_5 lysA_6 lysA_7
[13:02:28] Fixed 6 duplicate /gene - leuD_1 leuD_2 leuD_3 leuD_4 leuD_5 leuD_6
[13:02:28] Fixed 5 duplicate /gene - kdsC_1 kdsC_2 kdsC_3 kdsC_4 kdsC_5
[13:02:28] Fixed 3 duplicate /gene - fnr_1 fnr_2 fnr_3
[13:02:28] Fixed 3 duplicate /gene - yfgF_1 yfgF_2 yfgF_3
[13:02:28] Fixed 2 duplicate /gene - mglA_1 mglA_2
[13:02:28] Fixed 2 duplicate /gene - gap1_1 gap1_2
[13:02:28] Fixed 4 duplicate /gene - bioA_1 bioA_2 bioA_3 bioA_4
[13:02:28] Fixed 3 duplicate /gene - phoU_1 phoU_2 phoU_3
[13:02:28] Fixed 7 duplicate /gene - folD_1 folD_2 folD_3 folD_4 folD_5 folD_6 folD_7
[13:02:28] Fixed 6 duplicate /gene - secB_1 secB_2 secB_3 secB_4 secB_5 secB_6
[13:02:28] Fixed 2 duplicate /gene - rlmH_1 rlmH_2
[13:02:28] Fixed 3 duplicate /gene - hyi_1 hyi_2 hyi_3
[13:02:28] Fixed 6 duplicate /gene - ybeY_1 ybeY_2 ybeY_3 ybeY_4 ybeY_5 ybeY_6
[13:02:28] Fixed 7 duplicate /gene - rplC_1 rplC_2 rplC_3 rplC_4 rplC_5 rplC_6 rplC_7
[13:02:28] Fixed 2 duplicate /gene - dehH1_1 dehH1_2
[13:02:28] Fixed 2 duplicate /gene - petA_1 petA_2
[13:02:28] Fixed 5 duplicate /gene - msrB_1 msrB_2 msrB_3 msrB_4 msrB_5
[13:02:28] Fixed 2 duplicate /gene - rocF_1 rocF_2
[13:02:28] Fixed 3 duplicate /gene - prfB_1 prfB_2 prfB_3
[13:02:28] Fixed 2 duplicate /gene - carA_1 carA_2
[13:02:28] Fixed 16 duplicate /gene - dnaJ_1 dnaJ_2 dnaJ_3 dnaJ_4 dnaJ_5 dnaJ_6 dnaJ_7 dnaJ_8 dnaJ_9 dnaJ_10 dnaJ_11 dnaJ_12 dnaJ_13 dnaJ_14 dnaJ_15 dnaJ_16
[13:02:28] Fixed 3 duplicate /gene - gpr_1 gpr_2 gpr_3
[13:02:28] Fixed 3 duplicate /gene - rssA_1 rssA_2 rssA_3
[13:02:28] Fixed 2 duplicate /gene - Dml_1 Dml_2
[13:02:28] Fixed 3 duplicate /gene - coxM_1 coxM_2 coxM_3
[13:02:28] Fixed 3 duplicate /gene - glpC_1 glpC_2 glpC_3
[13:02:28] Fixed 3 duplicate /gene - lysN_1 lysN_2 lysN_3
[13:02:28] Fixed 4 duplicate /gene - pdxA1_1 pdxA1_2 pdxA1_3 pdxA1_4
[13:02:28] Fixed 2 duplicate /gene - sigK_1 sigK_2
[13:02:28] Fixed 3 duplicate /gene - gmk_1 gmk_2 gmk_3
[13:02:28] Fixed 7 duplicate /gene - nadE_1 nadE_2 nadE_3 nadE_4 nadE_5 nadE_6 nadE_7
[13:02:28] Fixed 3 duplicate /gene - metG_1 metG_2 metG_3
[13:02:28] Fixed 7 duplicate /gene - mutL_1 mutL_2 mutL_3 mutL_4 mutL_5 mutL_6 mutL_7
[13:02:28] Fixed 2 duplicate /gene - ftnA_1 ftnA_2
[13:02:28] Fixed 3 duplicate /gene - thlA_1 thlA_2 thlA_3
[13:02:28] Fixed 4 duplicate /gene - dxs_1 dxs_2 dxs_3 dxs_4
[13:02:28] Fixed 4 duplicate /gene - trpA_1 trpA_2 trpA_3 trpA_4
[13:02:28] Fixed 2 duplicate /gene - crp_1 crp_2
[13:02:28] Fixed 2 duplicate /gene - zapA_1 zapA_2
[13:02:28] Fixed 10 duplicate /gene - hemB_1 hemB_2 hemB_3 hemB_4 hemB_5 hemB_6 hemB_7 hemB_8 hemB_9 hemB_10
[13:02:28] Fixed 2 duplicate /gene - ydaM_1 ydaM_2
[13:02:28] Fixed 3 duplicate /gene - hss_1 hss_2 hss_3
[13:02:28] Fixed 7 duplicate /gene - rpsT_1 rpsT_2 rpsT_3 rpsT_4 rpsT_5 rpsT_6 rpsT_7
[13:02:28] Fixed 19 duplicate /gene - livF_1 livF_2 livF_3 livF_4 livF_5 livF_6 livF_7 livF_8 livF_9 livF_10 livF_11 livF_12 livF_13 livF_14 livF_15 livF_16 livF_17 livF_18 livF_19
[13:02:28] Fixed 6 duplicate /gene - ghrB_1 ghrB_2 ghrB_3 ghrB_4 ghrB_5 ghrB_6
[13:02:28] Fixed 2 duplicate /gene - podJ_1 podJ_2
[13:02:28] Fixed 2 duplicate /gene - apbE_1 apbE_2
[13:02:28] Fixed 7 duplicate /gene - ifcA_1 ifcA_2 ifcA_3 ifcA_4 ifcA_5 ifcA_6 ifcA_7
[13:02:28] Fixed 11 duplicate /gene - rpsJ_1 rpsJ_2 rpsJ_3 rpsJ_4 rpsJ_5 rpsJ_6 rpsJ_7 rpsJ_8 rpsJ_9 rpsJ_10 rpsJ_11
[13:02:28] Fixed 2 duplicate /gene - accA_1 accA_2
[13:02:28] Fixed 4 duplicate /gene - vfr_1 vfr_2 vfr_3 vfr_4
[13:02:28] Fixed 2 duplicate /gene - moxF_1 moxF_2
[13:02:28] Fixed 2 duplicate /gene - ackA_1 ackA_2
[13:02:28] Fixed 3 duplicate /gene - leuB_1 leuB_2 leuB_3
[13:02:28] Fixed 5 duplicate /gene - pilT_1 pilT_2 pilT_3 pilT_4 pilT_5
[13:02:28] Fixed 2 duplicate /gene - groS5_1 groS5_2
[13:02:28] Fixed 2 duplicate /gene - rutE_1 rutE_2
[13:02:28] Fixed 4 duplicate /gene - pobA_1 pobA_2 pobA_3 pobA_4
[13:02:28] Fixed 7 duplicate /gene - pcm_1 pcm_2 pcm_3 pcm_4 pcm_5 pcm_6 pcm_7
[13:02:28] Fixed 2 duplicate /gene - braC_1 braC_2
[13:02:28] Fixed 2 duplicate /gene - mog_1 mog_2
[13:02:28] Fixed 9 duplicate /gene - accD_1 accD_2 accD_3 accD_4 accD_5 accD_6 accD_7 accD_8 accD_9
[13:02:28] Fixed 6 duplicate /gene - tatA_1 tatA_2 tatA_3 tatA_4 tatA_5 tatA_6
[13:02:28] Fixed 2 duplicate /gene - gcvPB_1 gcvPB_2
[13:02:28] Fixed 5 duplicate /gene - uvrC_1 uvrC_2 uvrC_3 uvrC_4 uvrC_5
[13:02:28] Fixed 4 duplicate /gene - mnmA_1 mnmA_2 mnmA_3 mnmA_4
[13:02:28] Fixed 2 duplicate /gene - cadA_1 cadA_2
[13:02:28] Fixed 2 duplicate /gene - sbp_1 sbp_2
[13:02:28] Fixed 2 duplicate /gene - pepQ_1 pepQ_2
[13:02:28] Fixed 10 duplicate /gene - mshA_1 mshA_2 mshA_3 mshA_4 mshA_5 mshA_6 mshA_7 mshA_8 mshA_9 mshA_10
[13:02:28] Fixed 3 duplicate /gene - pilQ_1 pilQ_2 pilQ_3
[13:02:28] Fixed 2 duplicate /gene - motB_1 motB_2
[13:02:28] Fixed 6 duplicate /gene - gstB_1 gstB_2 gstB_3 gstB_4 gstB_5 gstB_6
[13:02:28] Fixed 3 duplicate /gene - trmH_1 trmH_2 trmH_3
[13:02:28] Fixed 6 duplicate /gene - etfA_1 etfA_2 etfA_3 etfA_4 etfA_5 etfA_6
[13:02:28] Fixed 6 duplicate /gene - degP1_1 degP1_2 degP1_3 degP1_4 degP1_5 degP1_6
[13:02:28] Fixed 5 duplicate /gene - tme_1 tme_2 tme_3 tme_4 tme_5
[13:02:28] Fixed 4 duplicate /gene - alkJ_1 alkJ_2 alkJ_3 alkJ_4
[13:02:28] Fixed 2 duplicate /gene - oppC_1 oppC_2
[13:02:28] Fixed 3 duplicate /gene - dnaK_1 dnaK_2 dnaK_3
[13:02:28] Fixed 4 duplicate /gene - truA_1 truA_2 truA_3 truA_4
[13:02:28] Fixed 7 duplicate /gene - tkrA_1 tkrA_2 tkrA_3 tkrA_4 tkrA_5 tkrA_6 tkrA_7
[13:02:28] Fixed 2 duplicate /gene - lytR_1 lytR_2
[13:02:28] Fixed 2 duplicate /gene - pta_1 pta_2
[13:02:28] Fixed 2 duplicate /gene - fixK_1 fixK_2
[13:02:28] Fixed 4 duplicate /gene - hisG_1 hisG_2 hisG_3 hisG_4
[13:02:28] Fixed 4 duplicate /gene - queA_1 queA_2 queA_3 queA_4
[13:02:28] Fixed 3 duplicate /gene - ccmF_1 ccmF_2 ccmF_3
[13:02:28] Fixed 3 duplicate /gene - ddpC_1 ddpC_2 ddpC_3
[13:02:28] Fixed 2 duplicate /gene - yciB_1 yciB_2
[13:02:28] Fixed 12 duplicate /gene - corA_1 corA_2 corA_3 corA_4 corA_5 corA_6 corA_7 corA_8 corA_9 corA_10 corA_11 corA_12
[13:02:28] Fixed 3 duplicate /gene - stp_1 stp_2 stp_3
[13:02:28] Fixed 4 duplicate /gene - mnmE_1 mnmE_2 mnmE_3 mnmE_4
[13:02:28] Fixed 3 duplicate /gene - ftsE_1 ftsE_2 ftsE_3
[13:02:28] Fixed 7 duplicate /gene - echA8_1 echA8_2 echA8_3 echA8_4 echA8_5 echA8_6 echA8_7
[13:02:28] Fixed 9 duplicate /gene - atpG_1 atpG_2 atpG_3 atpG_4 atpG_5 atpG_6 atpG_7 atpG_8 atpG_9
[13:02:28] Fixed 2 duplicate /gene - paaA_1 paaA_2
[13:02:28] Fixed 2 duplicate /gene - gor_1 gor_2
[13:02:28] Fixed 4 duplicate /gene - sodC_1 sodC_2 sodC_3 sodC_4
[13:02:28] Fixed 2 duplicate /gene - ligI_1 ligI_2
[13:02:28] Fixed 2 duplicate /gene - rng_1 rng_2
[13:02:28] Fixed 2 duplicate /gene - ysnE_1 ysnE_2
[13:02:28] Fixed 4 duplicate /gene - dapE_1 dapE_2 dapE_3 dapE_4
[13:02:28] Fixed 2 duplicate /gene - lutA_1 lutA_2
[13:02:28] Fixed 5 duplicate /gene - icd_1 icd_2 icd_3 icd_4 icd_5
[13:02:28] Fixed 4 duplicate /gene - ispB_1 ispB_2 ispB_3 ispB_4
[13:02:28] Fixed 3 duplicate /gene - trpS_1 trpS_2 trpS_3
[13:02:28] Fixed 2 duplicate /gene - fabG3_1 fabG3_2
[13:02:28] Fixed 3 duplicate /gene - psaB_1 psaB_2 psaB_3
[13:02:28] Fixed 7 duplicate /gene - envC_1 envC_2 envC_3 envC_4 envC_5 envC_6 envC_7
[13:02:28] Fixed 6 duplicate /gene - rplN_1 rplN_2 rplN_3 rplN_4 rplN_5 rplN_6
[13:02:28] Fixed 3 duplicate /gene - metC_1 metC_2 metC_3
[13:02:28] Fixed 2 duplicate /gene - cc4_1 cc4_2
[13:02:28] Fixed 3 duplicate /gene - slt_1 slt_2 slt_3
[13:02:28] Fixed 2 duplicate /gene - mrcA_1 mrcA_2
[13:02:28] Fixed 2 duplicate /gene - tfdA_1 tfdA_2
[13:02:28] Fixed 2 duplicate /gene - gspD_1 gspD_2
[13:02:28] Fixed 2 duplicate /gene - ctaD_1 ctaD_2
[13:02:28] Fixed 2 duplicate /gene - gbsA_1 gbsA_2
[13:02:28] Fixed 5 duplicate /gene - moeB_1 moeB_2 moeB_3 moeB_4 moeB_5
[13:02:28] Fixed 3 duplicate /gene - pqqD_1 pqqD_2 pqqD_3
[13:02:28] Fixed 3 duplicate /gene - yycF_1 yycF_2 yycF_3
[13:02:28] Fixed 2 duplicate /gene - hycG_1 hycG_2
[13:02:28] Fixed 6 duplicate /gene - xecA1_1 xecA1_2 xecA1_3 xecA1_4 xecA1_5 xecA1_6
[13:02:28] Fixed 3 duplicate /gene - kdpD_1 kdpD_2 kdpD_3
[13:02:28] Fixed 2 duplicate /gene - queG_1 queG_2
[13:02:28] Fixed 4 duplicate /gene - fabD_1 fabD_2 fabD_3 fabD_4
[13:02:28] Fixed 2 duplicate /gene - pcsA_1 pcsA_2
[13:02:28] Fixed 4 duplicate /gene - napC_1 napC_2 napC_3 napC_4
[13:02:28] Fixed 9 duplicate /gene - fabZ_1 fabZ_2 fabZ_3 fabZ_4 fabZ_5 fabZ_6 fabZ_7 fabZ_8 fabZ_9
[13:02:28] Fixed 2 duplicate /gene - bamD_1 bamD_2
[13:02:28] Fixed 3 duplicate /gene - lolC_1 lolC_2 lolC_3
[13:02:28] Fixed 19 duplicate /gene - gyrB_1 gyrB_2 gyrB_3 gyrB_4 gyrB_5 gyrB_6 gyrB_7 gyrB_8 gyrB_9 gyrB_10 gyrB_11 gyrB_12 gyrB_13 gyrB_14 gyrB_15 gyrB_16 gyrB_17 gyrB_18 gyrB_19
[13:02:28] Fixed 2 duplicate /gene - thrC_1 thrC_2
[13:02:28] Fixed 9 duplicate /gene - hemL_1 hemL_2 hemL_3 hemL_4 hemL_5 hemL_6 hemL_7 hemL_8 hemL_9
[13:02:28] Fixed 2 duplicate /gene - acn_1 acn_2
[13:02:28] Fixed 3 duplicate /gene - zwf_1 zwf_2 zwf_3
[13:02:28] Fixed 7 duplicate /gene - glmM_1 glmM_2 glmM_3 glmM_4 glmM_5 glmM_6 glmM_7
[13:02:28] Fixed 3 duplicate /gene - pbpA_1 pbpA_2 pbpA_3
[13:02:28] Fixed 3 duplicate /gene - cusF_1 cusF_2 cusF_3
[13:02:28] Fixed 5 duplicate /gene - ycdF_1 ycdF_2 ycdF_3 ycdF_4 ycdF_5
[13:02:28] Fixed 2 duplicate /gene - corC_1 corC_2
[13:02:28] Fixed 6 duplicate /gene - acrC_1 acrC_2 acrC_3 acrC_4 acrC_5 acrC_6
[13:02:28] Fixed 7 duplicate /gene - pheT_1 pheT_2 pheT_3 pheT_4 pheT_5 pheT_6 pheT_7
[13:02:28] Fixed 2 duplicate /gene - yidA_1 yidA_2
[13:02:28] Fixed 2 duplicate /gene - yocK_1 yocK_2
[13:02:28] Fixed 2 duplicate /gene - groL3_1 groL3_2
[13:02:28] Fixed 2 duplicate /gene - rpoS_1 rpoS_2
[13:02:28] Fixed 6 duplicate /gene - rnr_1 rnr_2 rnr_3 rnr_4 rnr_5 rnr_6
[13:02:28] Fixed 7 duplicate /gene - mdlB_1 mdlB_2 mdlB_3 mdlB_4 mdlB_5 mdlB_6 mdlB_7
[13:02:28] Fixed 5 duplicate /gene - rlmI_1 rlmI_2 rlmI_3 rlmI_4 rlmI_5
[13:02:28] Fixed 2 duplicate /gene - argH1_1 argH1_2
[13:02:28] Fixed 3 duplicate /gene - devR_1 devR_2 devR_3
[13:02:28] Fixed 6 duplicate /gene - trmL_1 trmL_2 trmL_3 trmL_4 trmL_5 trmL_6
[13:02:28] Fixed 2 duplicate /gene - mutB_1 mutB_2
[13:02:28] Fixed 2 duplicate /gene - hisD_1 hisD_2
[13:02:28] Fixed 2 duplicate /gene - yccA_1 yccA_2
[13:02:28] Fixed 2 duplicate /gene - galE_1 galE_2
[13:02:28] Fixed 2 duplicate /gene - bktB_1 bktB_2
[13:02:28] Fixed 5 duplicate /gene - regX3_1 regX3_2 regX3_3 regX3_4 regX3_5
[13:02:28] Fixed 2 duplicate /gene - ctrA_1 ctrA_2
[13:02:28] Fixed 2 duplicate /gene - yncA_1 yncA_2
[13:02:28] Fixed 8 duplicate /gene - acpP_1 acpP_2 acpP_3 acpP_4 acpP_5 acpP_6 acpP_7 acpP_8
[13:02:28] Fixed 3 duplicate /gene - ptrB_1 ptrB_2 ptrB_3
[13:02:28] Fixed 3 duplicate /gene - atpA_1 atpA_2 atpA_3
[13:02:28] Fixed 2 duplicate /gene - kdpB_1 kdpB_2
[13:02:28] Fixed 8 duplicate /gene - sigE_1 sigE_2 sigE_3 sigE_4 sigE_5 sigE_6 sigE_7 sigE_8
[13:02:28] Fixed 4 duplicate /gene - mtfA_1 mtfA_2 mtfA_3 mtfA_4
[13:02:28] Fixed 9 duplicate /gene - gph_1 gph_2 gph_3 gph_4 gph_5 gph_6 gph_7 gph_8 gph_9
[13:02:28] Fixed 3 duplicate /gene - patA_1 patA_2 patA_3
[13:02:28] Fixed 3 duplicate /gene - fsr_1 fsr_2 fsr_3
[13:02:28] Fixed 2 duplicate /gene - opuBB_1 opuBB_2
[13:02:28] Fixed 2 duplicate /gene - sdpR_1 sdpR_2
[13:02:28] Fixed 2 duplicate /gene - rpiA_1 rpiA_2
[13:02:28] Fixed 2 duplicate /gene - ywfH_1 ywfH_2
[13:02:28] Fixed 8 duplicate /gene - rpsL_1 rpsL_2 rpsL_3 rpsL_4 rpsL_5 rpsL_6 rpsL_7 rpsL_8
[13:02:28] Fixed 6 duplicate /gene - infB_1 infB_2 infB_3 infB_4 infB_5 infB_6
[13:02:28] Fixed 2 duplicate /gene - chaA_1 chaA_2
[13:02:28] Fixed 5 duplicate /gene - pntA_1 pntA_2 pntA_3 pntA_4 pntA_5
[13:02:28] Fixed 3 duplicate /gene - hmuV_1 hmuV_2 hmuV_3
[13:02:28] Fixed 2 duplicate /gene - tsaD1_1 tsaD1_2
[13:02:28] Fixed 5 duplicate /gene - rimO_1 rimO_2 rimO_3 rimO_4 rimO_5
[13:02:28] Fixed 4 duplicate /gene - thiC_1 thiC_2 thiC_3 thiC_4
[13:02:28] Fixed 3 duplicate /gene - vraR_1 vraR_2 vraR_3
[13:02:28] Fixed 5 duplicate /gene - xsc_1 xsc_2 xsc_3 xsc_4 xsc_5
[13:02:28] Fixed 3 duplicate /gene - dat_1 dat_2 dat_3
[13:02:28] Fixed 2 duplicate /gene - ctaA_1 ctaA_2
[13:02:28] Fixed 3 duplicate /gene - araQ_1 araQ_2 araQ_3
[13:02:28] Fixed 2 duplicate /gene - rlmJ_1 rlmJ_2
[13:02:28] Fixed 3 duplicate /gene - plsX_1 plsX_2 plsX_3
[13:02:28] Fixed 8 duplicate /gene - ogt_1 ogt_2 ogt_3 ogt_4 ogt_5 ogt_6 ogt_7 ogt_8
[13:02:28] Fixed 5 duplicate /gene - coaX_1 coaX_2 coaX_3 coaX_4 coaX_5
[13:02:28] Fixed 5 duplicate /gene - htrB_1 htrB_2 htrB_3 htrB_4 htrB_5
[13:02:28] Fixed 5 duplicate /gene - clpX_1 clpX_2 clpX_3 clpX_4 clpX_5
[13:02:28] Fixed 6 duplicate /gene - accC_1 accC_2 accC_3 accC_4 accC_5 accC_6
[13:02:28] Fixed 6 duplicate /gene - clpP_1 clpP_2 clpP_3 clpP_4 clpP_5 clpP_6
[13:02:28] Fixed 2 duplicate /gene - degP_1 degP_2
[13:02:28] Fixed 3 duplicate /gene - mcl2_1 mcl2_2 mcl2_3
[13:02:28] Fixed 4 duplicate /gene - atpF_1 atpF_2 atpF_3 atpF_4
[13:02:28] Fixed 4 duplicate /gene - csd_1 csd_2 csd_3 csd_4
[13:02:28] Fixed 4 duplicate /gene - dksA_1 dksA_2 dksA_3 dksA_4
[13:02:28] Fixed 3 duplicate /gene - ispH_1 ispH_2 ispH_3
[13:02:28] Fixed 5 duplicate /gene - guaA_1 guaA_2 guaA_3 guaA_4 guaA_5
[13:02:28] Fixed 2 duplicate /gene - fumA_1 fumA_2
[13:02:28] Fixed 2 duplicate /gene - egtD_1 egtD_2
[13:02:28] Fixed 2 duplicate /gene - rseP_1 rseP_2
[13:02:28] Fixed 2 duplicate /gene - comC_1 comC_2
[13:02:28] Fixed 5 duplicate /gene - iscA_1 iscA_2 iscA_3 iscA_4 iscA_5
[13:02:28] Fixed 2 duplicate /gene - recQ_1 recQ_2
[13:02:28] Fixed 2 duplicate /gene - cusB_1 cusB_2
[13:02:28] Fixed 3 duplicate /gene - kdsB_1 kdsB_2 kdsB_3
[13:02:28] Fixed 2 duplicate /gene - rasP_1 rasP_2
[13:02:28] Fixed 2 duplicate /gene - rny_1 rny_2
[13:02:28] Fixed 4 duplicate /gene - phhB_1 phhB_2 phhB_3 phhB_4
[13:02:28] Fixed 9 duplicate /gene - argB_1 argB_2 argB_3 argB_4 argB_5 argB_6 argB_7 argB_8 argB_9
[13:02:28] Fixed 2 duplicate /gene - ptsH_1 ptsH_2
[13:02:28] Fixed 3 duplicate /gene - pcnB_1 pcnB_2 pcnB_3
[13:02:28] Fixed 2 duplicate /gene - fadK_1 fadK_2
[13:02:28] Fixed 8 duplicate /gene - aroQ_1 aroQ_2 aroQ_3 aroQ_4 aroQ_5 aroQ_6 aroQ_7 aroQ_8
[13:02:28] Fixed 2 duplicate /gene - trpD_1 trpD_2
[13:02:28] Fixed 2 duplicate /gene - mop_1 mop_2
[13:02:28] Fixed 2 duplicate /gene - tagH_1 tagH_2
[13:02:28] Fixed 3 duplicate /gene - csoR_1 csoR_2 csoR_3
[13:02:28] Fixed 2 duplicate /gene - aapJ_1 aapJ_2
[13:02:28] Fixed 4 duplicate /gene - glnS_1 glnS_2 glnS_3 glnS_4
[13:02:28] Fixed 5 duplicate /gene - flhA_1 flhA_2 flhA_3 flhA_4 flhA_5
[13:02:28] Fixed 6 duplicate /gene - tpx_1 tpx_2 tpx_3 tpx_4 tpx_5 tpx_6
[13:02:28] Fixed 2 duplicate /gene - bpoC_1 bpoC_2
[13:02:28] Fixed 3 duplicate /gene - proB_1 proB_2 proB_3
[13:02:28] Fixed 11 duplicate /gene - acsA_1 acsA_2 acsA_3 acsA_4 acsA_5 acsA_6 acsA_7 acsA_8 acsA_9 acsA_10 acsA_11
[13:02:28] Fixed 3 duplicate /gene - birA_1 birA_2 birA_3
[13:02:28] Fixed 2 duplicate /gene - trmB_1 trmB_2
[13:02:28] Fixed 2 duplicate /gene - gltS_1 gltS_2
[13:02:28] Fixed 4 duplicate /gene - murB_1 murB_2 murB_3 murB_4
[13:02:28] Fixed 2 duplicate /gene - clpA_1 clpA_2
[13:02:28] Fixed 2 duplicate /gene - grxC_1 grxC_2
[13:02:28] Fixed 3 duplicate /gene - iolA_1 iolA_2 iolA_3
[13:02:28] Fixed 2 duplicate /gene - egtB_1 egtB_2
[13:02:28] Fixed 10 duplicate /gene - prs_1 prs_2 prs_3 prs_4 prs_5 prs_6 prs_7 prs_8 prs_9 prs_10
[13:02:28] Fixed 7 duplicate /gene - aroA_1 aroA_2 aroA_3 aroA_4 aroA_5 aroA_6 aroA_7
[13:02:28] Fixed 6 duplicate /gene - scpB_1 scpB_2 scpB_3 scpB_4 scpB_5 scpB_6
[13:02:28] Fixed 3 duplicate /gene - nikB_1 nikB_2 nikB_3
[13:02:28] Fixed 4 duplicate /gene - groL_1 groL_2 groL_3 groL_4
[13:02:28] Fixed 5 duplicate /gene - mprA_1 mprA_2 mprA_3 mprA_4 mprA_5
[13:02:28] Fixed 4 duplicate /gene - phbC_1 phbC_2 phbC_3 phbC_4
[13:02:28] Fixed 2 duplicate /gene - pabB_1 pabB_2
[13:02:28] Fixed 2 duplicate /gene - tyrB_1 tyrB_2
[13:02:28] Fixed 12 duplicate /gene - cspA_1 cspA_2 cspA_3 cspA_4 cspA_5 cspA_6 cspA_7 cspA_8 cspA_9 cspA_10 cspA_11 cspA_12
[13:02:28] Fixed 2 duplicate /gene - ntaA_1 ntaA_2
[13:02:28] Fixed 2 duplicate /gene - tig_1 tig_2
[13:02:28] Fixed 10 duplicate /gene - rnhA_1 rnhA_2 rnhA_3 rnhA_4 rnhA_5 rnhA_6 rnhA_7 rnhA_8 rnhA_9 rnhA_10
[13:02:28] Fixed 3 duplicate /gene - yfgC_1 yfgC_2 yfgC_3
[13:02:28] Fixed 2 duplicate /gene - gumD_1 gumD_2
[13:02:28] Fixed 3 duplicate /gene - msrA_1 msrA_2 msrA_3
[13:02:28] Fixed 11 duplicate /gene - fadA_1 fadA_2 fadA_3 fadA_4 fadA_5 fadA_6 fadA_7 fadA_8 fadA_9 fadA_10 fadA_11
[13:02:28] Fixed 2 duplicate /gene - mqnE_1 mqnE_2
[13:02:28] Fixed 4 duplicate /gene - smc_1 smc_2 smc_3 smc_4
[13:02:28] Fixed 3 duplicate /gene - hisB_1 hisB_2 hisB_3
[13:02:28] Fixed 2 duplicate /gene - osmC_1 osmC_2
[13:02:28] Fixed 2 duplicate /gene - pdxS_1 pdxS_2
[13:02:28] Fixed 8 duplicate /gene - exbB_1 exbB_2 exbB_3 exbB_4 exbB_5 exbB_6 exbB_7 exbB_8
[13:02:28] Fixed 4 duplicate /gene - rfaE_1 rfaE_2 rfaE_3 rfaE_4
[13:02:28] Fixed 9 duplicate /gene - def_1 def_2 def_3 def_4 def_5 def_6 def_7 def_8 def_9
[13:02:28] Fixed 2 duplicate /gene - amiC_1 amiC_2
[13:02:28] Fixed 5 duplicate /gene - gmhA_1 gmhA_2 gmhA_3 gmhA_4 gmhA_5
[13:02:28] Fixed 2 duplicate /gene - hemX_1 hemX_2
[13:02:28] Fixed 3 duplicate /gene - dxr_1 dxr_2 dxr_3
[13:02:28] Fixed 5 duplicate /gene - hisC2_1 hisC2_2 hisC2_3 hisC2_4 hisC2_5
[13:02:28] Fixed 3 duplicate /gene - phoD_1 phoD_2 phoD_3
[13:02:28] Fixed 5 duplicate /gene - kynA_1 kynA_2 kynA_3 kynA_4 kynA_5
[13:02:28] Fixed 6 duplicate /gene - lipB_1 lipB_2 lipB_3 lipB_4 lipB_5 lipB_6
[13:02:28] Fixed 2 duplicate /gene - luh_1 luh_2
[13:02:28] Fixed 4 duplicate /gene - rlmB_1 rlmB_2 rlmB_3 rlmB_4
[13:02:28] Fixed 6 duplicate /gene - ftsY_1 ftsY_2 ftsY_3 ftsY_4 ftsY_5 ftsY_6
[13:02:28] Fixed 4 duplicate /gene - fabG1_1 fabG1_2 fabG1_3 fabG1_4
[13:02:28] Fixed 6 duplicate /gene - zraR_1 zraR_2 zraR_3 zraR_4 zraR_5 zraR_6
[13:02:28] Fixed 2 duplicate /gene - ybgC_1 ybgC_2
[13:02:28] Fixed 5 duplicate /gene - lepB_1 lepB_2 lepB_3 lepB_4 lepB_5
[13:02:28] Fixed 3 duplicate /gene - liaR_1 liaR_2 liaR_3
[13:02:28] Fixed 9 duplicate /gene - pntB_1 pntB_2 pntB_3 pntB_4 pntB_5 pntB_6 pntB_7 pntB_8 pntB_9
[13:02:28] Fixed 4 duplicate /gene - nupX_1 nupX_2 nupX_3 nupX_4
[13:02:28] Fixed 4 duplicate /gene - uppS_1 uppS_2 uppS_3 uppS_4
[13:02:28] Fixed 5 duplicate /gene - typA_1 typA_2 typA_3 typA_4 typA_5
[13:02:28] Fixed 2 duplicate /gene - cmpC_1 cmpC_2
[13:02:28] Fixed 6 duplicate /gene - recR_1 recR_2 recR_3 recR_4 recR_5 recR_6
[13:02:28] Fixed 7 duplicate /gene - metK_1 metK_2 metK_3 metK_4 metK_5 metK_6 metK_7
[13:02:28] Fixed 3 duplicate /gene - ymdB_1 ymdB_2 ymdB_3
[13:02:28] Fixed 7 duplicate /gene - acdA_1 acdA_2 acdA_3 acdA_4 acdA_5 acdA_6 acdA_7
[13:02:28] Fixed 2 duplicate /gene - tesE_1 tesE_2
[13:02:28] Fixed 7 duplicate /gene - yadH_1 yadH_2 yadH_3 yadH_4 yadH_5 yadH_6 yadH_7
[13:02:28] Fixed 8 duplicate /gene - hicd_1 hicd_2 hicd_3 hicd_4 hicd_5 hicd_6 hicd_7 hicd_8
[13:02:28] Fixed 2 duplicate /gene - higB-2_1 higB-2_2
[13:02:28] Fixed 5 duplicate /gene - cmpD_1 cmpD_2 cmpD_3 cmpD_4 cmpD_5
[13:02:28] Fixed 4 duplicate /gene - erpA_1 erpA_2 erpA_3 erpA_4
[13:02:28] Fixed 2 duplicate /gene - adaB_1 adaB_2
[13:02:28] Fixed 2 duplicate /gene - wecB_1 wecB_2
[13:02:28] Fixed 2 duplicate /gene - yrrK_1 yrrK_2
[13:02:28] Fixed 3 duplicate /gene - ggt_1 ggt_2 ggt_3
[13:02:28] Fixed 4 duplicate /gene - ribD_1 ribD_2 ribD_3 ribD_4
[13:02:28] Fixed 2 duplicate /gene - carD_1 carD_2
[13:02:28] Fixed 3 duplicate /gene - dapD_1 dapD_2 dapD_3
[13:02:28] Fixed 2 duplicate /gene - dctA_1 dctA_2
[13:02:28] Fixed 6 duplicate /gene - phoB_1 phoB_2 phoB_3 phoB_4 phoB_5 phoB_6
[13:02:28] Fixed 10 duplicate /gene - frr_1 frr_2 frr_3 frr_4 frr_5 frr_6 frr_7 frr_8 frr_9 frr_10
[13:02:28] Fixed 4 duplicate /gene - amtB_1 amtB_2 amtB_3 amtB_4
[13:02:28] Fixed 22 duplicate /gene - fusA_1 fusA_2 fusA_3 fusA_4 fusA_5 fusA_6 fusA_7 fusA_8 fusA_9 fusA_10 fusA_11 fusA_12 fusA_13 fusA_14 fusA_15 fusA_16 fusA_17 fusA_18 fusA_19 fusA_20 fusA_21 fusA_22
[13:02:28] Fixed 4 duplicate /gene - mnmG_1 mnmG_2 mnmG_3 mnmG_4
[13:02:28] Fixed 2 duplicate /gene - sigA_1 sigA_2
[13:02:28] Fixed 3 duplicate /gene - fadN_1 fadN_2 fadN_3
[13:02:28] Fixed 5 duplicate /gene - uvrB_1 uvrB_2 uvrB_3 uvrB_4 uvrB_5
[13:02:28] Fixed 2 duplicate /gene - rpiB_1 rpiB_2
[13:02:28] Fixed 6 duplicate /gene - lpxA_1 lpxA_2 lpxA_3 lpxA_4 lpxA_5 lpxA_6
[13:02:28] Fixed 2 duplicate /gene - pdxA2_1 pdxA2_2
[13:02:28] Fixed 3 duplicate /gene - fabB_1 fabB_2 fabB_3
[13:02:28] Fixed 6 duplicate /gene - bioB_1 bioB_2 bioB_3 bioB_4 bioB_5 bioB_6
[13:02:28] Fixed 5 duplicate /gene - pleD_1 pleD_2 pleD_3 pleD_4 pleD_5
[13:02:28] Fixed 2 duplicate /gene - pcaK_1 pcaK_2
[13:02:28] Fixed 2 duplicate /gene - ycjP_1 ycjP_2
[13:02:28] Fixed 8 duplicate /gene - rpmB_1 rpmB_2 rpmB_3 rpmB_4 rpmB_5 rpmB_6 rpmB_7 rpmB_8
[13:02:28] Fixed 2 duplicate /gene - merA_1 merA_2
[13:02:28] Fixed 2 duplicate /gene - nfo_1 nfo_2
[13:02:28] Fixed 2 duplicate /gene - hemA_1 hemA_2
[13:02:28] Fixed 2 duplicate /gene - ripA_1 ripA_2
[13:02:28] Fixed 2 duplicate /gene - xecE_1 xecE_2
[13:02:28] Fixed 2 duplicate /gene - pad1_1 pad1_2
[13:02:28] Fixed 7 duplicate /gene - ftsH_1 ftsH_2 ftsH_3 ftsH_4 ftsH_5 ftsH_6 ftsH_7
[13:02:28] Fixed 5 duplicate /gene - rph_1 rph_2 rph_3 rph_4 rph_5
[13:02:28] Fixed 3 duplicate /gene - leuA_1 leuA_2 leuA_3
[13:02:28] Fixed 4 duplicate /gene - yidD_1 yidD_2 yidD_3 yidD_4
[13:02:28] Fixed 5 duplicate /gene - ctaE_1 ctaE_2 ctaE_3 ctaE_4 ctaE_5
[13:02:28] Fixed 6 duplicate /gene - soxA_1 soxA_2 soxA_3 soxA_4 soxA_5 soxA_6
[13:02:28] Fixed 13 duplicate /gene - trxA_1 trxA_2 trxA_3 trxA_4 trxA_5 trxA_6 trxA_7 trxA_8 trxA_9 trxA_10 trxA_11 trxA_12 trxA_13
[13:02:28] Fixed 3 duplicate /gene - hslV_1 hslV_2 hslV_3
[13:02:28] Fixed 2 duplicate /gene - fldH_1 fldH_2
[13:02:28] Fixed 4 duplicate /gene - clpS_1 clpS_2 clpS_3 clpS_4
[13:02:28] Fixed 3 duplicate /gene - pgpA_1 pgpA_2 pgpA_3
[13:02:28] Fixed 2 duplicate /gene - ecfA2_1 ecfA2_2
[13:02:28] Fixed 4 duplicate /gene - punA_1 punA_2 punA_3 punA_4
[13:02:28] Fixed 7 duplicate /gene - rimM_1 rimM_2 rimM_3 rimM_4 rimM_5 rimM_6 rimM_7
[13:02:28] Fixed 2 duplicate /gene - hcl_1 hcl_2
[13:02:28] Fixed 8 duplicate /gene - thiG_1 thiG_2 thiG_3 thiG_4 thiG_5 thiG_6 thiG_7 thiG_8
[13:02:28] Fixed 2 duplicate /gene - hflC_1 hflC_2
[13:02:28] Fixed 4 duplicate /gene - ssuC_1 ssuC_2 ssuC_3 ssuC_4
[13:02:28] Fixed 3 duplicate /gene - ppk_1 ppk_2 ppk_3
[13:02:28] Fixed 3 duplicate /gene - thrA_1 thrA_2 thrA_3
[13:02:28] Fixed 5 duplicate /gene - ykuD_1 ykuD_2 ykuD_3 ykuD_4 ykuD_5
[13:02:28] Fixed 4 duplicate /gene - parB_1 parB_2 parB_3 parB_4
[13:02:28] Fixed 2 duplicate /gene - mip_1 mip_2
[13:02:28] Fixed 4 duplicate /gene - cspB_1 cspB_2 cspB_3 cspB_4
[13:02:28] Fixed 5 duplicate /gene - prlC_1 prlC_2 prlC_3 prlC_4 prlC_5
[13:02:28] Fixed 7 duplicate /gene - frc_1 frc_2 frc_3 frc_4 frc_5 frc_6 frc_7
[13:02:28] Fixed 2 duplicate /gene - exaA_1 exaA_2
[13:02:28] Fixed 4 duplicate /gene - uvrY_1 uvrY_2 uvrY_3 uvrY_4
[13:02:28] Fixed 2 duplicate /gene - sspA_1 sspA_2
[13:02:28] Fixed 3 duplicate /gene - lolD_1 lolD_2 lolD_3
[13:02:28] Fixed 2 duplicate /gene - rlmD_1 rlmD_2
[13:02:28] Fixed 3 duplicate /gene - phhA_1 phhA_2 phhA_3
[13:02:28] Fixed 2 duplicate /gene - kinE_1 kinE_2
[13:02:28] Fixed 5 duplicate /gene - cysS_1 cysS_2 cysS_3 cysS_4 cysS_5
[13:02:28] Fixed 2 duplicate /gene - clpY_1 clpY_2
[13:02:28] Fixed 2 duplicate /gene - nodM_1 nodM_2
[13:02:28] Fixed 3 duplicate /gene - lutC_1 lutC_2 lutC_3
[13:02:28] Fixed 5 duplicate /gene - gno_1 gno_2 gno_3 gno_4 gno_5
[13:02:28] Fixed 6 duplicate /gene - rpsN_1 rpsN_2 rpsN_3 rpsN_4 rpsN_5 rpsN_6
[13:02:28] Fixed 9 duplicate /gene - rplS_1 rplS_2 rplS_3 rplS_4 rplS_5 rplS_6 rplS_7 rplS_8 rplS_9
[13:02:28] Fixed 5 duplicate /gene - tufA_1 tufA_2 tufA_3 tufA_4 tufA_5
[13:02:28] Fixed 3 duplicate /gene - thiS_1 thiS_2 thiS_3
[13:02:28] Fixed 3 duplicate /gene - sugE_1 sugE_2 sugE_3
[13:02:28] Fixed 4 duplicate /gene - metZ_1 metZ_2 metZ_3 metZ_4
[13:02:28] Fixed 6 duplicate /gene - pyrF_1 pyrF_2 pyrF_3 pyrF_4 pyrF_5 pyrF_6
[13:02:28] Fixed 2 duplicate /gene - bkdC_1 bkdC_2
[13:02:28] Fixed 2 duplicate /gene - ttuC_1 ttuC_2
[13:02:28] Fixed 4 duplicate /gene - aceF_1 aceF_2 aceF_3 aceF_4
[13:02:28] Fixed 2 duplicate /gene - nth_1 nth_2
[13:02:28] Fixed 4 duplicate /gene - petJ_1 petJ_2 petJ_3 petJ_4
[13:02:28] Fixed 4 duplicate /gene - can_1 can_2 can_3 can_4
[13:02:28] Fixed 4 duplicate /gene - ispG_1 ispG_2 ispG_3 ispG_4
[13:02:28] Fixed 2 duplicate /gene - czcR_1 czcR_2
[13:02:28] Fixed 2 duplicate /gene - murG_1 murG_2
[13:02:28] Fixed 2 duplicate /gene - yqgF_1 yqgF_2
[13:02:28] Fixed 2 duplicate /gene - fccB_1 fccB_2
[13:02:28] Fixed 3 duplicate /gene - miaA_1 miaA_2 miaA_3
[13:02:28] Fixed 2 duplicate /gene - hyfE_1 hyfE_2
[13:02:28] Fixed 2 duplicate /gene - trkA_1 trkA_2
[13:02:28] Fixed 7 duplicate /gene - rplB_1 rplB_2 rplB_3 rplB_4 rplB_5 rplB_6 rplB_7
[13:02:28] Fixed 4 duplicate /gene - ispF_1 ispF_2 ispF_3 ispF_4
[13:02:28] Fixed 7 duplicate /gene - prfA_1 prfA_2 prfA_3 prfA_4 prfA_5 prfA_6 prfA_7
[13:02:28] Fixed 2 duplicate /gene - atpB_1 atpB_2
[13:02:28] Fixed 5 duplicate /gene - glyS_1 glyS_2 glyS_3 glyS_4 glyS_5
[13:02:28] Fixed 6 duplicate /gene - nuoB_1 nuoB_2 nuoB_3 nuoB_4 nuoB_5 nuoB_6
[13:02:28] Fixed 7 duplicate /gene - cph1_1 cph1_2 cph1_3 cph1_4 cph1_5 cph1_6 cph1_7
[13:02:28] Fixed 3 duplicate /gene - ndh_1 ndh_2 ndh_3
[13:02:28] Fixed 6 duplicate /gene - rbfA_1 rbfA_2 rbfA_3 rbfA_4 rbfA_5 rbfA_6
[13:02:28] Fixed 4 duplicate /gene - leuS_1 leuS_2 leuS_3 leuS_4
[13:02:28] Fixed 3 duplicate /gene - ybeZ_1 ybeZ_2 ybeZ_3
[13:02:28] Fixed 9 duplicate /gene - rplL_1 rplL_2 rplL_3 rplL_4 rplL_5 rplL_6 rplL_7 rplL_8 rplL_9
[13:02:28] Fixed 2 duplicate /gene - rhlG_1 rhlG_2
[13:02:28] Fixed 2 duplicate /gene - hpd_1 hpd_2
[13:02:28] Fixed 5 duplicate /gene - rsfS_1 rsfS_2 rsfS_3 rsfS_4 rsfS_5
[13:02:28] Fixed 3 duplicate /gene - folE_1 folE_2 folE_3
[13:02:28] Fixed 6 duplicate /gene - argD_1 argD_2 argD_3 argD_4 argD_5 argD_6
[13:02:28] Fixed 5 duplicate /gene - gcvA_1 gcvA_2 gcvA_3 gcvA_4 gcvA_5
[13:02:28] Fixed 2 duplicate /gene - purB_1 purB_2
[13:02:28] Fixed 4 duplicate /gene - kdsA_1 kdsA_2 kdsA_3 kdsA_4
[13:02:28] Fixed 3 duplicate /gene - hpf_1 hpf_2 hpf_3
[13:02:28] Fixed 3 duplicate /gene - nlpD_1 nlpD_2 nlpD_3
[13:02:28] Fixed 3 duplicate /gene - fadJ_1 fadJ_2 fadJ_3
[13:02:28] Fixed 6 duplicate /gene - rpmG_1 rpmG_2 rpmG_3 rpmG_4 rpmG_5 rpmG_6
[13:02:28] Fixed 5 duplicate /gene - hisF_1 hisF_2 hisF_3 hisF_4 hisF_5
[13:02:28] Fixed 3 duplicate /gene - selA_1 selA_2 selA_3
[13:02:28] Fixed 5 duplicate /gene - cmk_1 cmk_2 cmk_3 cmk_4 cmk_5
[13:02:28] Fixed 2 duplicate /gene - rnk_1 rnk_2
[13:02:28] Fixed 4 duplicate /gene - hprK_1 hprK_2 hprK_3 hprK_4
[13:02:28] Fixed 2 duplicate /gene - fliN_1 fliN_2
[13:02:28] Fixed 2 duplicate /gene - mnmC_1 mnmC_2
[13:02:28] Fixed 2 duplicate /gene - adoK_1 adoK_2
[13:02:28] Fixed 11 duplicate /gene - tuf_1 tuf_2 tuf_3 tuf_4 tuf_5 tuf_6 tuf_7 tuf_8 tuf_9 tuf_10 tuf_11
[13:02:28] Fixed 4 duplicate /gene - nreC_1 nreC_2 nreC_3 nreC_4
[13:02:28] Fixed 4 duplicate /gene - futA2_1 futA2_2 futA2_3 futA2_4
[13:02:28] Fixed 6 duplicate /gene - rpe_1 rpe_2 rpe_3 rpe_4 rpe_5 rpe_6
[13:02:28] Fixed 3 duplicate /gene - aroC_1 aroC_2 aroC_3
[13:02:28] Fixed 6 duplicate /gene - uup_1 uup_2 uup_3 uup_4 uup_5 uup_6
[13:02:28] Fixed 3 duplicate /gene - aspC_1 aspC_2 aspC_3
[13:02:28] Fixed 4 duplicate /gene - trpF_1 trpF_2 trpF_3 trpF_4
[13:02:28] Fixed 2 duplicate /gene - dpnM_1 dpnM_2
[13:02:28] Fixed 2 duplicate /gene - eutD_1 eutD_2
[13:02:28] Fixed 2 duplicate /gene - yebC_1 yebC_2
[13:02:28] Fixed 3 duplicate /gene - ppa_1 ppa_2 ppa_3
[13:02:28] Fixed 3 duplicate /gene - todT_1 todT_2 todT_3
[13:02:28] Fixed 11 duplicate /gene - sucD_1 sucD_2 sucD_3 sucD_4 sucD_5 sucD_6 sucD_7 sucD_8 sucD_9 sucD_10 sucD_11
[13:02:28] Fixed 2 duplicate /gene - menB_1 menB_2
[13:02:28] Fixed 7 duplicate /gene - yknZ_1 yknZ_2 yknZ_3 yknZ_4 yknZ_5 yknZ_6 yknZ_7
[13:02:28] Fixed 2 duplicate /gene - ubiG_1 ubiG_2
[13:02:28] Fixed 10 duplicate /gene - lexA_1 lexA_2 lexA_3 lexA_4 lexA_5 lexA_6 lexA_7 lexA_8 lexA_9 lexA_10
[13:02:28] Fixed 2 duplicate /gene - ftsI_1 ftsI_2
[13:02:28] Fixed 2 duplicate /gene - rnc_1 rnc_2
[13:02:28] Fixed 3 duplicate /gene - pstB3_1 pstB3_2 pstB3_3
[13:02:28] Fixed 11 duplicate /gene - groS_1 groS_2 groS_3 groS_4 groS_5 groS_6 groS_7 groS_8 groS_9 groS_10 groS_11
[13:02:28] Fixed 3 duplicate /gene - serB_1 serB_2 serB_3
[13:02:28] Fixed 6 duplicate /gene - trmD_1 trmD_2 trmD_3 trmD_4 trmD_5 trmD_6
[13:02:28] Fixed 4 duplicate /gene - rpsP_1 rpsP_2 rpsP_3 rpsP_4
[13:02:28] Fixed 2 duplicate /gene - ribH1_1 ribH1_2
[13:02:28] Fixed 2 duplicate /gene - sphR_1 sphR_2
[13:02:28] Fixed 7 duplicate /gene - paaF_1 paaF_2 paaF_3 paaF_4 paaF_5 paaF_6 paaF_7
[13:02:28] Fixed 2 duplicate /gene - araE_1 araE_2
[13:02:28] Fixed 3 duplicate /gene - thyA_1 thyA_2 thyA_3
[13:02:28] Fixed 4 duplicate /gene - actP_1 actP_2 actP_3 actP_4
[13:02:28] Fixed 3 duplicate /gene - bbsG_1 bbsG_2 bbsG_3
[13:02:28] Fixed 5 duplicate /gene - purA_1 purA_2 purA_3 purA_4 purA_5
[13:02:28] Fixed 5 duplicate /gene - fumC_1 fumC_2 fumC_3 fumC_4 fumC_5
[13:02:28] Fixed 7 duplicate /gene - degU_1 degU_2 degU_3 degU_4 degU_5 degU_6 degU_7
[13:02:28] Fixed 2 duplicate /gene - pstA_1 pstA_2
[13:02:28] Fixed 3 duplicate /gene - ygbM_1 ygbM_2 ygbM_3
[13:02:28] Fixed 5 duplicate /gene - hup_1 hup_2 hup_3 hup_4 hup_5
[13:02:28] Fixed 11 duplicate /gene - rpsU_1 rpsU_2 rpsU_3 rpsU_4 rpsU_5 rpsU_6 rpsU_7 rpsU_8 rpsU_9 rpsU_10 rpsU_11
[13:02:28] Fixed 2 duplicate /gene - polX_1 polX_2
[13:02:28] Fixed 2 duplicate /gene - ftsQ_1 ftsQ_2
[13:02:28] Fixed 2 duplicate /gene - dgkA_1 dgkA_2
[13:02:28] Fixed 11 duplicate /gene - rplK_1 rplK_2 rplK_3 rplK_4 rplK_5 rplK_6 rplK_7 rplK_8 rplK_9 rplK_10 rplK_11
[13:02:28] Fixed 2 duplicate /gene - ctaG_1 ctaG_2
[13:02:28] Fixed 6 duplicate /gene - rplD_1 rplD_2 rplD_3 rplD_4 rplD_5 rplD_6
[13:02:28] Fixed 4 duplicate /gene - arcA_1 arcA_2 arcA_3 arcA_4
[13:02:28] Fixed 6 duplicate /gene - pheS_1 pheS_2 pheS_3 pheS_4 pheS_5 pheS_6
[13:02:28] Fixed 4 duplicate /gene - trkH_1 trkH_2 trkH_3 trkH_4
[13:02:28] Fixed 4 duplicate /gene - qseB_1 qseB_2 qseB_3 qseB_4
[13:02:28] Fixed 2 duplicate /gene - anr_1 anr_2
[13:02:28] Fixed 2 duplicate /gene - paiB_1 paiB_2
[13:02:28] Fixed 3 duplicate /gene - hdhA_1 hdhA_2 hdhA_3
[13:02:28] Fixed 4 duplicate /gene - betA_1 betA_2 betA_3 betA_4
[13:02:28] Fixed 11 duplicate /gene - rplP_1 rplP_2 rplP_3 rplP_4 rplP_5 rplP_6 rplP_7 rplP_8 rplP_9 rplP_10 rplP_11
[13:02:28] Fixed 2 duplicate /gene - mco_1 mco_2
[13:02:28] Fixed 2 duplicate /gene - hcrC_1 hcrC_2
[13:02:28] Fixed 4 duplicate /gene - gltK_1 gltK_2 gltK_3 gltK_4
[13:02:28] Fixed 5 duplicate /gene - ubiD_1 ubiD_2 ubiD_3 ubiD_4 ubiD_5
[13:02:28] Fixed 2 duplicate /gene - asnB_1 asnB_2
[13:02:28] Fixed 3 duplicate /gene - namA_1 namA_2 namA_3
[13:02:28] Fixed 4 duplicate /gene - apaH_1 apaH_2 apaH_3 apaH_4
[13:02:28] Fixed 2 duplicate /gene - lpd_1 lpd_2
[13:02:28] Fixed 3 duplicate /gene - ratA_1 ratA_2 ratA_3
[13:02:28] Fixed 9 duplicate /gene - argC_1 argC_2 argC_3 argC_4 argC_5 argC_6 argC_7 argC_8 argC_9
[13:02:28] Fixed 2 duplicate /gene - djlA_1 djlA_2
[13:02:28] Fixed 4 duplicate /gene - boxC_1 boxC_2 boxC_3 boxC_4
[13:02:28] Fixed 5 duplicate /gene - lpdA_1 lpdA_2 lpdA_3 lpdA_4 lpdA_5
[13:02:28] Fixed 4 duplicate /gene - rpsF_1 rpsF_2 rpsF_3 rpsF_4
[13:02:28] Fixed 3 duplicate /gene - opuCA_1 opuCA_2 opuCA_3
[13:02:28] Fixed 3 duplicate /gene - cheR2_1 cheR2_2 cheR2_3
[13:02:28] Fixed 3 duplicate /gene - yojM_1 yojM_2 yojM_3
[13:02:28] Fixed 3 duplicate /gene - ndhJ_1 ndhJ_2 ndhJ_3
[13:02:28] Fixed 8 duplicate /gene - lepA_1 lepA_2 lepA_3 lepA_4 lepA_5 lepA_6 lepA_7 lepA_8
[13:02:28] Fixed 4 duplicate /gene - grpE_1 grpE_2 grpE_3 grpE_4
[13:02:28] Fixed 6 duplicate /gene - algA_1 algA_2 algA_3 algA_4 algA_5 algA_6
[13:02:28] Fixed 2 duplicate /gene - queE_1 queE_2
[13:02:28] Fixed 8 duplicate /gene - sucC_1 sucC_2 sucC_3 sucC_4 sucC_5 sucC_6 sucC_7 sucC_8
[13:02:28] Fixed 3 duplicate /gene - pdxJ_1 pdxJ_2 pdxJ_3
[13:02:28] Fixed 7 duplicate /gene - fabF_1 fabF_2 fabF_3 fabF_4 fabF_5 fabF_6 fabF_7
[13:02:28] Fixed 8 duplicate /gene - mrdB_1 mrdB_2 mrdB_3 mrdB_4 mrdB_5 mrdB_6 mrdB_7 mrdB_8
[13:02:28] Fixed 10 duplicate /gene - argF_1 argF_2 argF_3 argF_4 argF_5 argF_6 argF_7 argF_8 argF_9 argF_10
[13:02:28] Fixed 5 duplicate /gene - cobB_1 cobB_2 cobB_3 cobB_4 cobB_5
[13:02:28] Fixed 4 duplicate /gene - ribBA_1 ribBA_2 ribBA_3 ribBA_4
[13:02:28] Fixed 3 duplicate /gene - ribF_1 ribF_2 ribF_3
[13:02:28] Fixed 4 duplicate /gene - iorB_1 iorB_2 iorB_3 iorB_4
[13:02:28] Fixed 3 duplicate /gene - dnaA_1 dnaA_2 dnaA_3
[13:02:28] Fixed 2 duplicate /gene - ywqF_1 ywqF_2
[13:02:28] Fixed 3 duplicate /gene - purU_1 purU_2 purU_3
[13:02:28] Fixed 2 duplicate /gene - msrC_1 msrC_2
[13:02:28] Fixed 9 duplicate /gene - metH_1 metH_2 metH_3 metH_4 metH_5 metH_6 metH_7 metH_8 metH_9
[13:02:28] Fixed 3 duplicate /gene - serC_1 serC_2 serC_3
[13:02:28] Fixed 2 duplicate /gene - baiF_1 baiF_2
[13:02:28] Fixed 8 duplicate /gene - rplM_1 rplM_2 rplM_3 rplM_4 rplM_5 rplM_6 rplM_7 rplM_8
[13:02:28] Fixed 3 duplicate /gene - ompR_1 ompR_2 ompR_3
[13:02:28] Fixed 3 duplicate /gene - catD_1 catD_2 catD_3
[13:02:28] Fixed 8 duplicate /gene - trxB_1 trxB_2 trxB_3 trxB_4 trxB_5 trxB_6 trxB_7 trxB_8
[13:02:28] Fixed 2 duplicate /gene - sat_1 sat_2
[13:02:28] Fixed 2 duplicate /gene - citZ_1 citZ_2
[13:02:28] Fixed 2 duplicate /gene - amiB_1 amiB_2
[13:02:28] Fixed 7 duplicate /gene - gyrA_1 gyrA_2 gyrA_3 gyrA_4 gyrA_5 gyrA_6 gyrA_7
[13:02:28] Fixed 2 duplicate /gene - ywlF_1 ywlF_2
[13:02:28] Fixed 2 duplicate /gene - takP_1 takP_2
[13:02:28] Fixed 5 duplicate /gene - trpB_1 trpB_2 trpB_3 trpB_4 trpB_5
[13:02:28] Fixed 3 duplicate /gene - tesA_1 tesA_2 tesA_3
[13:02:28] Fixed 4 duplicate /gene - lgt_1 lgt_2 lgt_3 lgt_4
[13:02:28] Fixed 3 duplicate /gene - moeZ_1 moeZ_2 moeZ_3
[13:02:28] Fixed 4 duplicate /gene - tgt_1 tgt_2 tgt_3 tgt_4
[13:02:28] Fixed 8 duplicate /gene - glyA_1 glyA_2 glyA_3 glyA_4 glyA_5 glyA_6 glyA_7 glyA_8
[13:02:28] Fixed 2 duplicate /gene - glpE_1 glpE_2
[13:02:28] Fixed 2 duplicate /gene - butA_1 butA_2
[13:02:28] Fixed 2 duplicate /gene - yngG_1 yngG_2
[13:02:28] Fixed 2 duplicate /gene - nudG_1 nudG_2
[13:02:28] Fixed 5 duplicate /gene - rplX_1 rplX_2 rplX_3 rplX_4 rplX_5
[13:02:28] Fixed 7 duplicate /gene - rpmC_1 rpmC_2 rpmC_3 rpmC_4 rpmC_5 rpmC_6 rpmC_7
[13:02:28] Fixed 7 duplicate /gene - oprF_1 oprF_2 oprF_3 oprF_4 oprF_5 oprF_6 oprF_7
[13:02:28] Fixed 2 duplicate /gene - wcaJ_1 wcaJ_2
[13:02:28] Fixed 2 duplicate /gene - hslO_1 hslO_2
[13:02:28] Fixed 3 duplicate /gene - cysW_1 cysW_2 cysW_3
[13:02:28] Fixed 14 duplicate /gene - gatA_1 gatA_2 gatA_3 gatA_4 gatA_5 gatA_6 gatA_7 gatA_8 gatA_9 gatA_10 gatA_11 gatA_12 gatA_13 gatA_14
[13:02:28] Fixed 3 duplicate /gene - rutB_1 rutB_2 rutB_3
[13:02:28] Fixed 3 duplicate /gene - gcvP_1 gcvP_2 gcvP_3
[13:02:28] Fixed 2 duplicate /gene - fdhA_1 fdhA_2
[13:02:28] Fixed 2 duplicate /gene - yhjE_1 yhjE_2
[13:02:28] Fixed 7 duplicate /gene - panB_1 panB_2 panB_3 panB_4 panB_5 panB_6 panB_7
[13:02:28] Fixed 3 duplicate /gene - ribH_1 ribH_2 ribH_3
[13:02:28] Fixed 9 duplicate /gene - atpD_1 atpD_2 atpD_3 atpD_4 atpD_5 atpD_6 atpD_7 atpD_8 atpD_9
[13:02:28] Fixed 11 duplicate /gene - tsf_1 tsf_2 tsf_3 tsf_4 tsf_5 tsf_6 tsf_7 tsf_8 tsf_9 tsf_10 tsf_11
[13:02:28] Fixed 4 duplicate /gene - tolC_1 tolC_2 tolC_3 tolC_4
[13:02:28] Fixed 3 duplicate /gene - dsbA_1 dsbA_2 dsbA_3
[13:02:28] Fixed 2 duplicate /gene - hutH_1 hutH_2
[13:02:28] Fixed 2 duplicate /gene - cmpB_1 cmpB_2
[13:02:28] Fixed 2 duplicate /gene - folB_1 folB_2
[13:02:28] Fixed 8 duplicate /gene - dppB_1 dppB_2 dppB_3 dppB_4 dppB_5 dppB_6 dppB_7 dppB_8
[13:02:28] Fixed 5 duplicate /gene - ilvH_1 ilvH_2 ilvH_3 ilvH_4 ilvH_5
[13:02:28] Fixed 14 duplicate /gene - bcp_1 bcp_2 bcp_3 bcp_4 bcp_5 bcp_6 bcp_7 bcp_8 bcp_9 bcp_10 bcp_11 bcp_12 bcp_13 bcp_14
[13:02:28] Fixed 3 duplicate /gene - poxB_1 poxB_2 poxB_3
[13:02:28] Fixed 3 duplicate /gene - ftsW_1 ftsW_2 ftsW_3
[13:02:28] Fixed 5 duplicate /gene - trpG_1 trpG_2 trpG_3 trpG_4 trpG_5
[13:02:28] Fixed 2 duplicate /gene - vraS_1 vraS_2
[13:02:28] Fixed 2 duplicate /gene - recN_1 recN_2
[13:02:28] Fixed 8 duplicate /gene - aceE_1 aceE_2 aceE_3 aceE_4 aceE_5 aceE_6 aceE_7 aceE_8
[13:02:28] Fixed 7 duplicate /gene - glmU_1 glmU_2 glmU_3 glmU_4 glmU_5 glmU_6 glmU_7
[13:02:28] Fixed 4 duplicate /gene - fadB2_1 fadB2_2 fadB2_3 fadB2_4
[13:02:28] Fixed 13 duplicate /gene - infA_1 infA_2 infA_3 infA_4 infA_5 infA_6 infA_7 infA_8 infA_9 infA_10 infA_11 infA_12 infA_13
[13:02:28] Fixed 4 duplicate /gene - argA_1 argA_2 argA_3 argA_4
[13:02:28] Fixed 4 duplicate /gene - ahcY_1 ahcY_2 ahcY_3 ahcY_4
[13:02:28] Fixed 5 duplicate /gene - yabJ_1 yabJ_2 yabJ_3 yabJ_4 yabJ_5
[13:02:28] Fixed 2 duplicate /gene - rluF_1 rluF_2
[13:02:28] Fixed 5 duplicate /gene - rplF_1 rplF_2 rplF_3 rplF_4 rplF_5
[13:02:28] Fixed 5 duplicate /gene - lspA_1 lspA_2 lspA_3 lspA_4 lspA_5
[13:02:28] Fixed 2 duplicate /gene - moaD_1 moaD_2
[13:02:28] Fixed 2 duplicate /gene - rmlA1_1 rmlA1_2
[13:02:28] Fixed 2 duplicate /gene - yybR_1 yybR_2
[13:02:28] Fixed 2 duplicate /gene - degS_1 degS_2
[13:02:28] Fixed 2 duplicate /gene - pdxT_1 pdxT_2
[13:02:28] Fixed 6 duplicate /gene - ppiB_1 ppiB_2 ppiB_3 ppiB_4 ppiB_5 ppiB_6
[13:02:28] Fixed 2 duplicate /gene - tatC2_1 tatC2_2
[13:02:28] Fixed 4 duplicate /gene - hutI_1 hutI_2 hutI_3 hutI_4
[13:02:28] Fixed 3 duplicate /gene - lolA_1 lolA_2 lolA_3
[13:02:28] Fixed 3 duplicate /gene - ilvI_1 ilvI_2 ilvI_3
[13:02:28] Fixed 2 duplicate /gene - penA_1 penA_2
[13:02:28] Fixed 10 duplicate /gene - efp_1 efp_2 efp_3 efp_4 efp_5 efp_6 efp_7 efp_8 efp_9 efp_10
[13:02:28] Fixed 3 duplicate /gene - purE_1 purE_2 purE_3
[13:02:28] Fixed 6 duplicate /gene - bclA_1 bclA_2 bclA_3 bclA_4 bclA_5 bclA_6
[13:02:28] Fixed 3 duplicate /gene - recB_1 recB_2 recB_3
[13:02:28] Fixed 2 duplicate /gene - rplV_1 rplV_2
[13:02:28] Fixed 5 duplicate /gene - dsbC_1 dsbC_2 dsbC_3 dsbC_4 dsbC_5
[13:02:28] Fixed 2 duplicate /gene - xdhA_1 xdhA_2
[13:02:28] Fixed 3 duplicate /gene - moaB_1 moaB_2 moaB_3
[13:02:28] Fixed 4 duplicate /gene - yjcC_1 yjcC_2 yjcC_3 yjcC_4
[13:02:28] Fixed 4 duplicate /gene - dut_1 dut_2 dut_3 dut_4
[13:02:28] Fixed 7 duplicate /gene - trpE_1 trpE_2 trpE_3 trpE_4 trpE_5 trpE_6 trpE_7
[13:02:28] Fixed 2 duplicate /gene - arpB_1 arpB_2
[13:02:28] Fixed 6 duplicate /gene - tyrS_1 tyrS_2 tyrS_3 tyrS_4 tyrS_5 tyrS_6
[13:02:28] Fixed 4 duplicate /gene - nadD_1 nadD_2 nadD_3 nadD_4
[13:02:28] Fixed 2 duplicate /gene - crcB_1 crcB_2
[13:02:28] Fixed 5 duplicate /gene - surE_1 surE_2 surE_3 surE_4 surE_5
[13:02:28] Fixed 5 duplicate /gene - htpX_1 htpX_2 htpX_3 htpX_4 htpX_5
[13:02:28] Fixed 5 duplicate /gene - rpmA_1 rpmA_2 rpmA_3 rpmA_4 rpmA_5
[13:02:28] Fixed 4 duplicate /gene - rluD_1 rluD_2 rluD_3 rluD_4
[13:02:28] Fixed 3 duplicate /gene - glcB_1 glcB_2 glcB_3
[13:02:28] Fixed 2 duplicate /gene - adrB_1 adrB_2
[13:02:28] Fixed 3 duplicate /gene - galA_1 galA_2 galA_3
[13:02:28] Fixed 6 duplicate /gene - gmd_1 gmd_2 gmd_3 gmd_4 gmd_5 gmd_6
[13:02:28] Fixed 2 duplicate /gene - pepN_1 pepN_2
[13:02:28] Fixed 3 duplicate /gene - adk_1 adk_2 adk_3
[13:02:28] Fixed 5 duplicate /gene - rpoB_1 rpoB_2 rpoB_3 rpoB_4 rpoB_5
[13:02:28] Fixed 3 duplicate /gene - nreB_1 nreB_2 nreB_3
[13:02:28] Fixed 3 duplicate /gene - srrB_1 srrB_2 srrB_3
[13:02:28] Fixed 4 duplicate /gene - pnp_1 pnp_2 pnp_3 pnp_4
[13:02:28] Fixed 2 duplicate /gene - rbsA_1 rbsA_2
[13:02:28] Fixed 2 duplicate /gene - yjmC_1 yjmC_2
[13:02:28] Fixed 3 duplicate /gene - accD5_1 accD5_2 accD5_3
[13:02:28] Fixed 7 duplicate /gene - tauD_1 tauD_2 tauD_3 tauD_4 tauD_5 tauD_6 tauD_7
[13:02:28] Fixed 3 duplicate /gene - tamA_1 tamA_2 tamA_3
[13:02:28] Fixed 2 duplicate /gene - hinT_1 hinT_2
[13:02:28] Fixed 4 duplicate /gene - garB_1 garB_2 garB_3 garB_4
[13:02:28] Fixed 2 duplicate /gene - araB_1 araB_2
[13:02:28] Fixed 3 duplicate /gene - petB_1 petB_2 petB_3
[13:02:28] Fixed 7 duplicate /gene - irtA_1 irtA_2 irtA_3 irtA_4 irtA_5 irtA_6 irtA_7
[13:02:28] Fixed 3 duplicate /gene - dapA_1 dapA_2 dapA_3
[13:02:28] Fixed 6 duplicate /gene - tpiA_1 tpiA_2 tpiA_3 tpiA_4 tpiA_5 tpiA_6
[13:02:28] Fixed 3 duplicate /gene - gap2_1 gap2_2 gap2_3
[13:02:28] Fixed 3 duplicate /gene - cls_1 cls_2 cls_3
[13:02:28] Fixed 4 duplicate /gene - hda_1 hda_2 hda_3 hda_4
[13:02:28] Fixed 6 duplicate /gene - ruvB_1 ruvB_2 ruvB_3 ruvB_4 ruvB_5 ruvB_6
[13:02:28] Fixed 5 duplicate /gene - Hgd_1 Hgd_2 Hgd_3 Hgd_4 Hgd_5
[13:02:28] Fixed 2 duplicate /gene - gpmA_1 gpmA_2
[13:02:28] Fixed 4 duplicate /gene - maeB_1 maeB_2 maeB_3 maeB_4
[13:02:28] Fixed 6 duplicate /gene - iscS_1 iscS_2 iscS_3 iscS_4 iscS_5 iscS_6
[13:02:28] Fixed 3 duplicate /gene - glnK_1 glnK_2 glnK_3
[13:02:28] Fixed 2 duplicate /gene - nylA_1 nylA_2
[13:02:28] Fixed 3 duplicate /gene - rsgA_1 rsgA_2 rsgA_3
[13:02:28] Fixed 2 duplicate /gene - mazF_1 mazF_2
[13:02:28] Fixed 4 duplicate /gene - yvqK_1 yvqK_2 yvqK_3 yvqK_4
[13:02:28] Fixed 4 duplicate /gene - cysB_1 cysB_2 cysB_3 cysB_4
[13:02:28] Fixed 4 duplicate /gene - rluB_1 rluB_2 rluB_3 rluB_4
[13:02:28] Fixed 6 duplicate /gene - osmY_1 osmY_2 osmY_3 osmY_4 osmY_5 osmY_6
[13:02:28] Fixed 4 duplicate /gene - rcsC_1 rcsC_2 rcsC_3 rcsC_4
[13:02:28] Fixed 6 duplicate /gene - pyrC_1 pyrC_2 pyrC_3 pyrC_4 pyrC_5 pyrC_6
[13:02:28] Fixed 4 duplicate /gene - lpd3_1 lpd3_2 lpd3_3 lpd3_4
[13:02:28] Fixed 2 duplicate /gene - rlmL_1 rlmL_2
[13:02:28] Fixed 4 duplicate /gene - uvrD_1 uvrD_2 uvrD_3 uvrD_4
[13:02:28] Fixed 10 duplicate /gene - mdh_1 mdh_2 mdh_3 mdh_4 mdh_5 mdh_6 mdh_7 mdh_8 mdh_9 mdh_10
[13:02:28] Fixed 4 duplicate /gene - rpmE_1 rpmE_2 rpmE_3 rpmE_4
[13:02:28] Fixed 2 duplicate /gene - uhpA_1 uhpA_2
[13:02:28] Fixed 2 duplicate /gene - selD_1 selD_2
[13:02:28] Fixed 3 duplicate /gene - xylG_1 xylG_2 xylG_3
[13:02:28] Fixed 5 duplicate /gene - kduD_1 kduD_2 kduD_3 kduD_4 kduD_5
[13:02:28] Fixed 3 duplicate /gene - yhhW_1 yhhW_2 yhhW_3
[13:02:28] Fixed 2 duplicate /gene - fpr_1 fpr_2
[13:02:28] Fixed 5 duplicate /gene - siaT_1 siaT_2 siaT_3 siaT_4 siaT_5
[13:02:28] Fixed 8 duplicate /gene - nrdR_1 nrdR_2 nrdR_3 nrdR_4 nrdR_5 nrdR_6 nrdR_7 nrdR_8
[13:02:28] Fixed 2 duplicate /gene - alkB_1 alkB_2
[13:02:28] Fixed 3 duplicate /gene - ybhF_1 ybhF_2 ybhF_3
[13:02:28] Fixed 3 duplicate /gene - acyP_1 acyP_2 acyP_3
[13:02:28] Fixed 2 duplicate /gene - rsmB_1 rsmB_2
[13:02:28] Fixed 2 duplicate /gene - strE_1 strE_2
[13:02:28] Fixed 9 duplicate /gene - rpmI_1 rpmI_2 rpmI_3 rpmI_4 rpmI_5 rpmI_6 rpmI_7 rpmI_8 rpmI_9
[13:02:28] Fixed 2 duplicate /gene - vapC_1 vapC_2
[13:02:28] Fixed 6 duplicate /gene - argJ_1 argJ_2 argJ_3 argJ_4 argJ_5 argJ_6
[13:02:28] Fixed 3 duplicate /gene - msbA_1 msbA_2 msbA_3
[13:02:28] Fixed 10 duplicate /gene - rpsG_1 rpsG_2 rpsG_3 rpsG_4 rpsG_5 rpsG_6 rpsG_7 rpsG_8 rpsG_9 rpsG_10
[13:02:28] Fixed 2 duplicate /gene - yqaA_1 yqaA_2
[13:02:28] Fixed 6 duplicate /gene - cutS_1 cutS_2 cutS_3 cutS_4 cutS_5 cutS_6
[13:02:28] Fixed 2 duplicate /gene - yvdP_1 yvdP_2
[13:02:28] Fixed 5 duplicate /gene - rpoE_1 rpoE_2 rpoE_3 rpoE_4 rpoE_5
[13:02:28] Fixed 2 duplicate /gene - ddlB_1 ddlB_2
[13:02:28] Fixed 8 duplicate /gene - ligA_1 ligA_2 ligA_3 ligA_4 ligA_5 ligA_6 ligA_7 ligA_8
[13:02:28] Fixed 2 duplicate /gene - ctpV_1 ctpV_2
[13:02:28] Fixed 2 duplicate /gene - pyrE_1 pyrE_2
[13:02:28] Fixed 3 duplicate /gene - ftsB_1 ftsB_2 ftsB_3
[13:02:28] Fixed 2 duplicate /gene - lcfB_1 lcfB_2
[13:02:28] Fixed 2 duplicate /gene - uspE_1 uspE_2
[13:02:28] Fixed 3 duplicate /gene - cspC_1 cspC_2 cspC_3
[13:02:28] Fixed 7 duplicate /gene - mdeA_1 mdeA_2 mdeA_3 mdeA_4 mdeA_5 mdeA_6 mdeA_7
[13:02:28] Fixed 3 duplicate /gene - rsmG_1 rsmG_2 rsmG_3
[13:02:28] Fixed 6 duplicate /gene - yheH_1 yheH_2 yheH_3 yheH_4 yheH_5 yheH_6
[13:02:28] Fixed 10 duplicate /gene - map_1 map_2 map_3 map_4 map_5 map_6 map_7 map_8 map_9 map_10
[13:02:28] Fixed 2 duplicate /gene - rps1_1 rps1_2
[13:02:28] Fixed 6 duplicate /gene - cutA_1 cutA_2 cutA_3 cutA_4 cutA_5 cutA_6
[13:02:28] Fixed 3 duplicate /gene - cpnA_1 cpnA_2 cpnA_3
[13:02:28] Fixed 4 duplicate /gene - rplQ_1 rplQ_2 rplQ_3 rplQ_4
[13:02:28] Fixed 5 duplicate /gene - gpsA_1 gpsA_2 gpsA_3 gpsA_4 gpsA_5
[13:02:28] Fixed 2 duplicate /gene - nuoM_1 nuoM_2
[13:02:28] Fixed 3 duplicate /gene - yngHB_1 yngHB_2 yngHB_3
[13:02:28] Fixed 3 duplicate /gene - lipA_1 lipA_2 lipA_3
[13:02:28] Fixed 2 duplicate /gene - yghA_1 yghA_2
[13:02:28] Fixed 4 duplicate /gene - czcA_1 czcA_2 czcA_3 czcA_4
[13:02:28] Fixed 5 duplicate /gene - soxS_1 soxS_2 soxS_3 soxS_4 soxS_5
[13:02:28] Fixed 2 duplicate /gene - ppnK_1 ppnK_2
[13:02:28] Fixed 3 duplicate /gene - iscU_1 iscU_2 iscU_3
[13:02:28] Fixed 6 duplicate /gene - etfB_1 etfB_2 etfB_3 etfB_4 etfB_5 etfB_6
[13:02:28] Fixed 2 duplicate /gene - gpx2_1 gpx2_2
[13:02:28] Fixed 3 duplicate /gene - pdhC_1 pdhC_2 pdhC_3
[13:02:28] Fixed 2 duplicate /gene - rsmI_1 rsmI_2
[13:02:28] Fixed 6 duplicate /gene - resA_1 resA_2 resA_3 resA_4 resA_5 resA_6
[13:02:28] Fixed 3 duplicate /gene - dosC_1 dosC_2 dosC_3
[13:02:28] Fixed 4 duplicate /gene - yjjK_1 yjjK_2 yjjK_3 yjjK_4
[13:02:28] Fixed 3 duplicate /gene - mcrA_1 mcrA_2 mcrA_3
[13:02:28] Fixed 4 duplicate /gene - tdh_1 tdh_2 tdh_3 tdh_4
[13:02:28] Fixed 4 duplicate /gene - epsE_1 epsE_2 epsE_3 epsE_4
[13:02:28] Fixed 2 duplicate /gene - lnt_1 lnt_2
[13:02:28] Fixed 3 duplicate /gene - acs_1 acs_2 acs_3
[13:02:28] Fixed 4 duplicate /gene - gmr_1 gmr_2 gmr_3 gmr_4
[13:02:28] Fixed 4 duplicate /gene - nqo5_1 nqo5_2 nqo5_3 nqo5_4
[13:02:28] Fixed 4 duplicate /gene - panC_1 panC_2 panC_3 panC_4
[13:02:28] Fixed 2 duplicate /gene - ydcV_1 ydcV_2
[13:02:28] Fixed 2 duplicate /gene - sdcS_1 sdcS_2
[13:02:28] Fixed 2 duplicate /gene - maiA_1 maiA_2
[13:02:28] Fixed 4 duplicate /gene - ppsA_1 ppsA_2 ppsA_3 ppsA_4
[13:02:28] Fixed 8 duplicate /gene - lysS_1 lysS_2 lysS_3 lysS_4 lysS_5 lysS_6 lysS_7 lysS_8
[13:02:28] Fixed 2 duplicate /gene - xylA_1 xylA_2
[13:02:28] Fixed 2 duplicate /gene - argR_1 argR_2
[13:02:28] Fixed 7 duplicate /gene - slyD_1 slyD_2 slyD_3 slyD_4 slyD_5 slyD_6 slyD_7
[13:02:28] Fixed 6 duplicate /gene - ihfA_1 ihfA_2 ihfA_3 ihfA_4 ihfA_5 ihfA_6
[13:02:28] Fixed 6 duplicate /gene - coq7_1 coq7_2 coq7_3 coq7_4 coq7_5 coq7_6
[13:02:28] Fixed 9 duplicate /gene - lpxD_1 lpxD_2 lpxD_3 lpxD_4 lpxD_5 lpxD_6 lpxD_7 lpxD_8 lpxD_9
[13:02:28] Fixed 8 duplicate /gene - tatC_1 tatC_2 tatC_3 tatC_4 tatC_5 tatC_6 tatC_7 tatC_8
[13:02:28] Fixed 2 duplicate /gene - tusA_1 tusA_2
[13:02:28] Fixed 2 duplicate /gene - dhaa_1 dhaa_2
[13:02:28] Fixed 4 duplicate /gene - mraY_1 mraY_2 mraY_3 mraY_4
[13:02:28] Fixed 2 duplicate /gene - lldD_1 lldD_2
[13:02:28] Fixed 9 duplicate /gene - rpsS_1 rpsS_2 rpsS_3 rpsS_4 rpsS_5 rpsS_6 rpsS_7 rpsS_8 rpsS_9
[13:02:28] Fixed 3 duplicate /gene - gdhI_1 gdhI_2 gdhI_3
[13:02:28] Fixed 4 duplicate /gene - rnhB_1 rnhB_2 rnhB_3 rnhB_4
[13:02:28] Fixed 3 duplicate /gene - parC_1 parC_2 parC_3
[13:02:28] Fixed 5 duplicate /gene - yiaD_1 yiaD_2 yiaD_3 yiaD_4 yiaD_5
[13:02:28] Fixed 5 duplicate /gene - rplO_1 rplO_2 rplO_3 rplO_4 rplO_5
[13:02:28] Fixed 2 duplicate /gene - rhmD_1 rhmD_2
[13:02:28] Fixed 2 duplicate /gene - rsh_1 rsh_2
[13:02:28] Fixed 4 duplicate /gene - mmsA_1 mmsA_2 mmsA_3 mmsA_4
[13:02:28] Fixed 3 duplicate /gene - psdht_1 psdht_2 psdht_3
[13:02:28] Fixed 7 duplicate /gene - hldE_1 hldE_2 hldE_3 hldE_4 hldE_5 hldE_6 hldE_7
[13:02:28] Fixed 3 duplicate /gene - senX3_1 senX3_2 senX3_3
[13:02:28] Fixed 4 duplicate /gene - dapH_1 dapH_2 dapH_3 dapH_4
[13:02:28] Fixed 45 duplicate /gene - fabG_1 fabG_2 fabG_3 fabG_4 fabG_5 fabG_6 fabG_7 fabG_8 fabG_9 fabG_10 fabG_11 fabG_12 fabG_13 fabG_14 fabG_15 fabG_16 fabG_17 fabG_18 fabG_19 fabG_20 fabG_21 fabG_22 fabG_23 fabG_24 fabG_25 fabG_26 fabG_27 fabG_28 fabG_29 fabG_30 fabG_31 fabG_32 fabG_33 fabG_34 fabG_35 fabG_36 fabG_37 fabG_38 fabG_39 fabG_40 fabG_41 fabG_42 fabG_43 fabG_44 fabG_45
[13:02:28] Fixed 7 duplicate /gene - gsiD_1 gsiD_2 gsiD_3 gsiD_4 gsiD_5 gsiD_6 gsiD_7
[13:02:28] Fixed 3 duplicate /gene - epd_1 epd_2 epd_3
[13:02:28] Fixed 6 duplicate /gene - yidC_1 yidC_2 yidC_3 yidC_4 yidC_5 yidC_6
[13:02:28] Fixed 10 duplicate /gene - ndhC_1 ndhC_2 ndhC_3 ndhC_4 ndhC_5 ndhC_6 ndhC_7 ndhC_8 ndhC_9 ndhC_10
[13:02:28] Fixed 2 duplicate /gene - folC_1 folC_2
[13:02:28] Fixed 8 duplicate /gene - fcl_1 fcl_2 fcl_3 fcl_4 fcl_5 fcl_6 fcl_7 fcl_8
[13:02:28] Fixed 3 duplicate /gene - ppdK_1 ppdK_2 ppdK_3
[13:02:28] Fixed 2 duplicate /gene - rpoZ_1 rpoZ_2
[13:02:28] Fixed 2 duplicate /gene - pduA_1 pduA_2
[13:02:28] Fixed 11 duplicate /gene - pyrB_1 pyrB_2 pyrB_3 pyrB_4 pyrB_5 pyrB_6 pyrB_7 pyrB_8 pyrB_9 pyrB_10 pyrB_11
[13:02:28] Fixed 4 duplicate /gene - trpC_1 trpC_2 trpC_3 trpC_4
[13:02:28] Fixed 4 duplicate /gene - sufB_1 sufB_2 sufB_3 sufB_4
[13:02:28] Fixed 2 duplicate /gene - dnaN_1 dnaN_2
[13:02:28] Fixed 9 duplicate /gene - pgk_1 pgk_2 pgk_3 pgk_4 pgk_5 pgk_6 pgk_7 pgk_8 pgk_9
[13:02:28] Fixed 8 duplicate /gene - tag_1 tag_2 tag_3 tag_4 tag_5 tag_6 tag_7 tag_8
[13:02:28] Fixed 5 duplicate /gene - dapB_1 dapB_2 dapB_3 dapB_4 dapB_5
[13:02:28] Fixed 6 duplicate /gene - rpsA_1 rpsA_2 rpsA_3 rpsA_4 rpsA_5 rpsA_6
[13:02:28] Fixed 3 duplicate /gene - gshB_1 gshB_2 gshB_3
[13:02:28] Fixed 5 duplicate /gene - purN_1 purN_2 purN_3 purN_4 purN_5
[13:02:28] Fixed 2 duplicate /gene - purC_1 purC_2
[13:02:28] Fixed 2 duplicate /gene - mfd_1 mfd_2
[13:02:28] Fixed 6 duplicate /gene - suhB_1 suhB_2 suhB_3 suhB_4 suhB_5 suhB_6
[13:02:28] Fixed 4 duplicate /gene - tuf1_1 tuf1_2 tuf1_3 tuf1_4
[13:02:28] Fixed 2 duplicate /gene - ccmC_1 ccmC_2
[13:02:28] Fixed 2 duplicate /gene - nuoC_1 nuoC_2
[13:02:28] Fixed 4 duplicate /gene - kbl_1 kbl_2 kbl_3 kbl_4
[13:02:28] Fixed 6 duplicate /gene - divK_1 divK_2 divK_3 divK_4 divK_5 divK_6
[13:02:28] Fixed 3 duplicate /gene - trmJ_1 trmJ_2 trmJ_3
[13:02:28] Fixed 2 duplicate /gene - pepA_1 pepA_2
[13:02:28] Fixed 2 duplicate /gene - hrcA_1 hrcA_2
[13:02:28] Fixed 5 duplicate /gene - boxB_1 boxB_2 boxB_3 boxB_4 boxB_5
[13:02:28] Fixed 2 duplicate /gene - rpsB_1 rpsB_2
[13:02:28] Fixed 15 duplicate /gene - macB_1 macB_2 macB_3 macB_4 macB_5 macB_6 macB_7 macB_8 macB_9 macB_10 macB_11 macB_12 macB_13 macB_14 macB_15
[13:02:28] Fixed 4 duplicate /gene - valS_1 valS_2 valS_3 valS_4
[13:02:28] Fixed 2 duplicate /gene - dehH2_1 dehH2_2
[13:02:28] Fixed 14 duplicate /gene - greA_1 greA_2 greA_3 greA_4 greA_5 greA_6 greA_7 greA_8 greA_9 greA_10 greA_11 greA_12 greA_13 greA_14
[13:02:28] Fixed 10 duplicate /gene - dppC_1 dppC_2 dppC_3 dppC_4 dppC_5 dppC_6 dppC_7 dppC_8 dppC_9 dppC_10
[13:02:28] Fixed 2 duplicate /gene - tktA_1 tktA_2
[13:02:28] Fixed 2 duplicate /gene - rpsI_1 rpsI_2
[13:02:28] Fixed 4 duplicate /gene - higB-1_1 higB-1_2 higB-1_3 higB-1_4
[13:02:28] Fixed 9 duplicate /gene - lptB_1 lptB_2 lptB_3 lptB_4 lptB_5 lptB_6 lptB_7 lptB_8 lptB_9
[13:02:28] Fixed 2 duplicate /gene - hpcE_1 hpcE_2
[13:02:28] Fixed 3 duplicate /gene - cysD_1 cysD_2 cysD_3
[13:02:28] Fixed 4 duplicate /gene - parA_1 parA_2 parA_3 parA_4
[13:02:28] Fixed 2 duplicate /gene - orn_1 orn_2
[13:02:28] Fixed 2 duplicate /gene - ytrA_1 ytrA_2
[13:02:28] Fixed 9 duplicate /gene - glnQ_1 glnQ_2 glnQ_3 glnQ_4 glnQ_5 glnQ_6 glnQ_7 glnQ_8 glnQ_9
[13:02:28] Fixed 7 duplicate /gene - miaB_1 miaB_2 miaB_3 miaB_4 miaB_5 miaB_6 miaB_7
[13:02:28] Fixed 3 duplicate /gene - ndhI_1 ndhI_2 ndhI_3
[13:02:28] Fixed 3 duplicate /gene - cofC_1 cofC_2 cofC_3
[13:02:28] Fixed 2 duplicate /gene - hflK_1 hflK_2
[13:02:28] Fixed 4 duplicate /gene - soj_1 soj_2 soj_3 soj_4
[13:02:28] Fixed 3 duplicate /gene - scpA_1 scpA_2 scpA_3
[13:02:28] Fixed 2 duplicate /gene - ybdK_1 ybdK_2
[13:02:28] Fixed 2 duplicate /gene - pcaI_1 pcaI_2
[13:02:28] Fixed 4 duplicate /gene - rplA_1 rplA_2 rplA_3 rplA_4
[13:02:28] Fixed 7 duplicate /gene - cysM_1 cysM_2 cysM_3 cysM_4 cysM_5 cysM_6 cysM_7
[13:02:28] Fixed 3 duplicate /gene - ttcA_1 ttcA_2 ttcA_3
[13:02:28] Fixed 3 duplicate /gene - xerD_1 xerD_2 xerD_3
[13:02:28] Fixed 6 duplicate /gene - metX_1 metX_2 metX_3 metX_4 metX_5 metX_6
[13:02:28] Fixed 5 duplicate /gene - sucB_1 sucB_2 sucB_3 sucB_4 sucB_5
[13:02:28] Fixed 7 duplicate /gene - rplI_1 rplI_2 rplI_3 rplI_4 rplI_5 rplI_6 rplI_7
[13:02:28] Fixed 2 duplicate /gene - nicA_1 nicA_2
[13:02:28] Fixed 2 duplicate /gene - gltT_1 gltT_2
[13:02:28] Fixed 3 duplicate /gene - gsiC_1 gsiC_2 gsiC_3
[13:02:28] Fixed 2 duplicate /gene - korA_1 korA_2
[13:02:28] Fixed 3 duplicate /gene - ttgH_1 ttgH_2 ttgH_3
[13:02:28] Fixed 4 duplicate /gene - rplR_1 rplR_2 rplR_3 rplR_4
[13:02:28] Fixed 3 duplicate /gene - atpH_1 atpH_2 atpH_3
[13:02:28] Fixed 13 duplicate /gene - accB_1 accB_2 accB_3 accB_4 accB_5 accB_6 accB_7 accB_8 accB_9 accB_10 accB_11 accB_12 accB_13
[13:02:28] Fixed 2 duplicate /gene - nqo4_1 nqo4_2
[13:02:28] Fixed 3 duplicate /gene - ilvA_1 ilvA_2 ilvA_3
[13:02:28] Fixed 5 duplicate /gene - pal_1 pal_2 pal_3 pal_4 pal_5
[13:02:28] Fixed 10 duplicate /gene - mreB_1 mreB_2 mreB_3 mreB_4 mreB_5 mreB_6 mreB_7 mreB_8 mreB_9 mreB_10
[13:02:28] Fixed 2 duplicate /gene - psuT_1 psuT_2
[13:02:28] Fixed 2 duplicate /gene - rplT_1 rplT_2
[13:02:28] Fixed 2 duplicate /gene - hsaA_1 hsaA_2
[13:02:28] Fixed 4 duplicate /gene - hacA_1 hacA_2 hacA_3 hacA_4
[13:02:28] Fixed 2 duplicate /gene - cheB_1 cheB_2
[13:02:28] Fixed 3 duplicate /gene - cysK_1 cysK_2 cysK_3
[13:02:28] Fixed 6 duplicate /gene - atpE_1 atpE_2 atpE_3 atpE_4 atpE_5 atpE_6
[13:02:28] Fixed 6 duplicate /gene - yliI_1 yliI_2 yliI_3 yliI_4 yliI_5 yliI_6
[13:02:28] Fixed 2 duplicate /gene - grdB_1 grdB_2
[13:02:28] Fixed 2 duplicate /gene - mgtE_1 mgtE_2
[13:02:28] Fixed 3 duplicate /gene - bdhA_1 bdhA_2 bdhA_3
[13:02:28] Fixed 2 duplicate /gene - prpC_1 prpC_2
[13:02:28] Fixed 12 duplicate /gene - rplW_1 rplW_2 rplW_3 rplW_4 rplW_5 rplW_6 rplW_7 rplW_8 rplW_9 rplW_10 rplW_11 rplW_12
[13:02:28] Fixed 5 duplicate /gene - tal_1 tal_2 tal_3 tal_4 tal_5
[13:02:28] Fixed 2 duplicate /gene - bphF_1 bphF_2
[13:02:28] Fixed 6 duplicate /gene - rplJ_1 rplJ_2 rplJ_3 rplJ_4 rplJ_5 rplJ_6
[13:02:28] Fixed 2 duplicate /gene - putA_1 putA_2
[13:02:28] Fixed 17 duplicate /gene - glnB_1 glnB_2 glnB_3 glnB_4 glnB_5 glnB_6 glnB_7 glnB_8 glnB_9 glnB_10 glnB_11 glnB_12 glnB_13 glnB_14 glnB_15 glnB_16 glnB_17
[13:02:28] Fixed 11 duplicate /gene - nuoK_1 nuoK_2 nuoK_3 nuoK_4 nuoK_5 nuoK_6 nuoK_7 nuoK_8 nuoK_9 nuoK_10 nuoK_11
[13:02:28] Fixed 9 duplicate /gene - proA_1 proA_2 proA_3 proA_4 proA_5 proA_6 proA_7 proA_8 proA_9
[13:02:28] Fixed 2 duplicate /gene - rpmH_1 rpmH_2
[13:02:28] Fixed 9 duplicate /gene - aspS_1 aspS_2 aspS_3 aspS_4 aspS_5 aspS_6 aspS_7 aspS_8 aspS_9
[13:02:28] Fixed 2 duplicate /gene - ascD_1 ascD_2
[13:02:28] Fixed 4 duplicate /gene - ycfH_1 ycfH_2 ycfH_3 ycfH_4
[13:02:28] Fixed 3 duplicate /gene - ureA_1 ureA_2 ureA_3
[13:02:28] Fixed 2 duplicate /gene - degQ_1 degQ_2
[13:02:28] Fixed 6 duplicate /gene - pckA_1 pckA_2 pckA_3 pckA_4 pckA_5 pckA_6
[13:02:28] Fixed 2 duplicate /gene - ldh_1 ldh_2
[13:02:28] Fixed 4 duplicate /gene - rpsE_1 rpsE_2 rpsE_3 rpsE_4
[13:02:28] Fixed 2 duplicate /gene - hemH_1 hemH_2
[13:02:28] Fixed 2 duplicate /gene - cheB2_1 cheB2_2
[13:02:28] Fixed 2 duplicate /gene - phnW_1 phnW_2
[13:02:28] Fixed 7 duplicate /gene - fadH_1 fadH_2 fadH_3 fadH_4 fadH_5 fadH_6 fadH_7
[13:02:28] Fixed 2 duplicate /gene - gdhA_1 gdhA_2
[13:02:28] Fixed 5 duplicate /gene - mmgB_1 mmgB_2 mmgB_3 mmgB_4 mmgB_5
[13:02:28] Fixed 3 duplicate /gene - alr_1 alr_2 alr_3
[13:02:28] Fixed 2 duplicate /gene - mopII_1 mopII_2
[13:02:28] Fixed 5 duplicate /gene - exbD_1 exbD_2 exbD_3 exbD_4 exbD_5
[13:02:28] Fixed 6 duplicate /gene - prpD_1 prpD_2 prpD_3 prpD_4 prpD_5 prpD_6
[13:02:28] Fixed 2 duplicate /gene - xseB_1 xseB_2
[13:02:28] Fixed 9 duplicate /gene - rpsD_1 rpsD_2 rpsD_3 rpsD_4 rpsD_5 rpsD_6 rpsD_7 rpsD_8 rpsD_9
[13:02:28] Fixed 4 duplicate /gene - yycG_1 yycG_2 yycG_3 yycG_4
[13:02:28] Fixed 5 duplicate /gene - nagL_1 nagL_2 nagL_3 nagL_4 nagL_5
[13:02:28] Fixed 4 duplicate /gene - nrdB_1 nrdB_2 nrdB_3 nrdB_4
[13:02:28] Fixed 3 duplicate /gene - aroE_1 aroE_2 aroE_3
[13:02:28] Fixed 4 duplicate /gene - C2-hpah_1 C2-hpah_2 C2-hpah_3 C2-hpah_4
[13:02:28] Fixed 4 duplicate /gene - argG_1 argG_2 argG_3 argG_4
[13:02:28] Fixed 2 duplicate /gene - rsbT_1 rsbT_2
[13:02:28] Fixed 5 duplicate /gene - hslU_1 hslU_2 hslU_3 hslU_4 hslU_5
[13:02:28] Fixed 2 duplicate /gene - mcl1_1 mcl1_2
[13:02:28] Fixed 8 duplicate /gene - zraS_1 zraS_2 zraS_3 zraS_4 zraS_5 zraS_6 zraS_7 zraS_8
[13:02:28] Fixed 2 duplicate /gene - yvyD_1 yvyD_2
[13:02:28] Fixed 5 duplicate /gene - alaC_1 alaC_2 alaC_3 alaC_4 alaC_5
[13:02:28] Fixed 6 duplicate /gene - nadC_1 nadC_2 nadC_3 nadC_4 nadC_5 nadC_6
[13:02:28] Fixed 5 duplicate /gene - baeR_1 baeR_2 baeR_3 baeR_4 baeR_5
[13:02:28] Fixed 3 duplicate /gene - alaS_1 alaS_2 alaS_3
[13:02:28] Fixed 2 duplicate /gene - hldD_1 hldD_2
[13:02:28] Fixed 4 duplicate /gene - rpsO_1 rpsO_2 rpsO_3 rpsO_4
[13:02:28] Fixed 7 duplicate /gene - ychF_1 ychF_2 ychF_3 ychF_4 ychF_5 ychF_6 ychF_7
[13:02:28] Fixed 4 duplicate /gene - hrp1_1 hrp1_2 hrp1_3 hrp1_4
[13:02:28] Fixed 2 duplicate /gene - bcrA_1 bcrA_2
[13:02:28] Fixed 3 duplicate /gene - tsaC1_1 tsaC1_2 tsaC1_3
[13:02:28] Fixed 2 duplicate /gene - gdh_1 gdh_2
[13:02:28] Fixed 3 duplicate /gene - arsC_1 arsC_2 arsC_3
[13:02:28] Fixed 11 duplicate /gene - cutL_1 cutL_2 cutL_3 cutL_4 cutL_5 cutL_6 cutL_7 cutL_8 cutL_9 cutL_10 cutL_11
[13:02:28] Fixed 3 duplicate /gene - rpoA_1 rpoA_2 rpoA_3
[13:02:28] Fixed 3 duplicate /gene - aceB_1 aceB_2 aceB_3
[13:02:28] Fixed 5 duplicate /gene - rpmD_1 rpmD_2 rpmD_3 rpmD_4 rpmD_5
[13:02:28] Fixed 2 duplicate /gene - lpxC_1 lpxC_2
[13:02:28] Fixed 2 duplicate /gene - sigH_1 sigH_2
[13:02:28] Fixed 3 duplicate /gene - cdd_1 cdd_2 cdd_3
[13:02:28] Fixed 4 duplicate /gene - bamA_1 bamA_2 bamA_3 bamA_4
[13:02:28] Fixed 3 duplicate /gene - comEA_1 comEA_2 comEA_3
[13:02:28] Fixed 4 duplicate /gene - bbsF_1 bbsF_2 bbsF_3 bbsF_4
[13:02:28] Fixed 7 duplicate /gene - uvrA_1 uvrA_2 uvrA_3 uvrA_4 uvrA_5 uvrA_6 uvrA_7
[13:02:28] Fixed 5 duplicate /gene - hspA_1 hspA_2 hspA_3 hspA_4 hspA_5
[13:02:28] Fixed 2 duplicate /gene - lacA_1 lacA_2
[13:02:28] Fixed 3 duplicate /gene - hppA_1 hppA_2 hppA_3
[13:02:28] Fixed 2 duplicate /gene - tdcB_1 tdcB_2
[13:02:28] Fixed 3 duplicate /gene - queC_1 queC_2 queC_3
[13:02:28] Fixed 4 duplicate /gene - purD_1 purD_2 purD_3 purD_4
[13:02:28] Fixed 4 duplicate /gene - glpK_1 glpK_2 glpK_3 glpK_4
[13:02:28] Fixed 6 duplicate /gene - ndhS_1 ndhS_2 ndhS_3 ndhS_4 ndhS_5 ndhS_6
[13:02:28] Fixed 3 duplicate /gene - coaA_1 coaA_2 coaA_3
[13:02:28] Fixed 2 duplicate /gene - yghU_1 yghU_2
[13:02:28] Fixed 4 duplicate /gene - trxC_1 trxC_2 trxC_3 trxC_4
[13:02:28] Fixed 2 duplicate /gene - kup_1 kup_2
[13:02:28] Fixed 4 duplicate /gene - gcvT_1 gcvT_2 gcvT_3 gcvT_4
[13:02:28] Fixed 3 duplicate /gene - pntAA_1 pntAA_2 pntAA_3
[13:02:28] Fixed 3 duplicate /gene - pdxA_1 pdxA_2 pdxA_3
[13:02:28] Fixed 6 duplicate /gene - nagK_1 nagK_2 nagK_3 nagK_4 nagK_5 nagK_6
[13:02:28] Fixed 3 duplicate /gene - prfC_1 prfC_2 prfC_3
[13:02:28] Fixed 2 duplicate /gene - hsdA_1 hsdA_2
[13:02:28] Fixed 3 duplicate /gene - rpmF_1 rpmF_2 rpmF_3
[13:02:28] Fixed 4 duplicate /gene - nuoI_1 nuoI_2 nuoI_3 nuoI_4
[13:02:28] Fixed 4 duplicate /gene - comM_1 comM_2 comM_3 comM_4
[13:02:28] Fixed 5 duplicate /gene - tuaD_1 tuaD_2 tuaD_3 tuaD_4 tuaD_5
[13:02:28] Fixed 6 duplicate /gene - purH_1 purH_2 purH_3 purH_4 purH_5 purH_6
[13:02:28] Fixed 2 duplicate /gene - ugpB_1 ugpB_2
[13:02:28] Fixed 3 duplicate /gene - rpoH_1 rpoH_2 rpoH_3
[13:02:28] Fixed 2 duplicate /gene - fdx_1 fdx_2
[13:02:28] Fixed 2 duplicate /gene - mepH_1 mepH_2
[13:02:28] Fixed 3 duplicate /gene - fhs_1 fhs_2 fhs_3
[13:02:28] Fixed 2 duplicate /gene - mazG_1 mazG_2
[13:02:28] Fixed 2 duplicate /gene - gapA_1 gapA_2
[13:02:28] Fixed 4 duplicate /gene - tmk_1 tmk_2 tmk_3 tmk_4
[13:02:28] Fixed 3 duplicate /gene - pepP_1 pepP_2 pepP_3
[13:02:28] Fixed 6 duplicate /gene - nuoD_1 nuoD_2 nuoD_3 nuoD_4 nuoD_5 nuoD_6
[13:02:28] Fixed 4 duplicate /gene - tesB_1 tesB_2 tesB_3 tesB_4
[13:02:28] Fixed 5 duplicate /gene - htpG_1 htpG_2 htpG_3 htpG_4 htpG_5
[13:02:28] Fixed 5 duplicate /gene - ccmE_1 ccmE_2 ccmE_3 ccmE_4 ccmE_5
[13:02:28] Fixed 7 duplicate /gene - araC_1 araC_2 araC_3 araC_4 araC_5 araC_6 araC_7
[13:02:28] Fixed 3 duplicate /gene - yhdE_1 yhdE_2 yhdE_3
[13:02:28] Fixed 3 duplicate /gene - nqo1_1 nqo1_2 nqo1_3
[13:02:28] Fixed 4 duplicate /gene - fabH_1 fabH_2 fabH_3 fabH_4
[13:02:28] Fixed 4 duplicate /gene - rpoC_1 rpoC_2 rpoC_3 rpoC_4
[13:02:28] Fixed 2 duplicate /gene - potH_1 potH_2
[13:02:28] Fixed 3 duplicate /gene - hmuU_1 hmuU_2 hmuU_3
[13:02:28] Fixed 7 duplicate /gene - fabI_1 fabI_2 fabI_3 fabI_4 fabI_5 fabI_6 fabI_7
[13:02:28] Fixed 6 duplicate /gene - gcvH_1 gcvH_2 gcvH_3 gcvH_4 gcvH_5 gcvH_6
[13:02:28] Fixed 2 duplicate /gene - mrpF_1 mrpF_2
[13:02:28] Fixed 9 duplicate /gene - gatB_1 gatB_2 gatB_3 gatB_4 gatB_5 gatB_6 gatB_7 gatB_8 gatB_9
[13:02:28] Fixed 3 duplicate /gene - pheA_1 pheA_2 pheA_3
[13:02:28] Fixed 3 duplicate /gene - spoT_1 spoT_2 spoT_3
[13:02:28] Fixed 2 duplicate /gene - hisC_1 hisC_2
[13:02:28] Fixed 4 duplicate /gene - aroK_1 aroK_2 aroK_3 aroK_4
[13:02:28] Fixed 2 duplicate /gene - rarA_1 rarA_2
[13:02:28] Fixed 2 duplicate /gene - ctaC_1 ctaC_2
[13:02:28] Fixed 7 duplicate /gene - clpB_1 clpB_2 clpB_3 clpB_4 clpB_5 clpB_6 clpB_7
[13:02:28] Fixed 3 duplicate /gene - clsB_1 clsB_2 clsB_3
[13:02:28] Fixed 4 duplicate /gene - rlmE_1 rlmE_2 rlmE_3 rlmE_4
[13:02:28] Fixed 8 duplicate /gene - rplU_1 rplU_2 rplU_3 rplU_4 rplU_5 rplU_6 rplU_7 rplU_8
[13:02:28] Fixed 11 duplicate /gene - pyrH_1 pyrH_2 pyrH_3 pyrH_4 pyrH_5 pyrH_6 pyrH_7 pyrH_8 pyrH_9 pyrH_10 pyrH_11
[13:02:28] Fixed 7 duplicate /gene - ddl_1 ddl_2 ddl_3 ddl_4 ddl_5 ddl_6 ddl_7
[13:02:28] Fixed 7 duplicate /gene - dnaB_1 dnaB_2 dnaB_3 dnaB_4 dnaB_5 dnaB_6 dnaB_7
[13:02:28] Fixed 2 duplicate /gene - cysT_1 cysT_2
[13:02:28] Fixed 4 duplicate /gene - lrp_1 lrp_2 lrp_3 lrp_4
[13:02:28] Fixed 3 duplicate /gene - dadA_1 dadA_2 dadA_3
[13:02:28] Fixed 10 duplicate /gene - polA_1 polA_2 polA_3 polA_4 polA_5 polA_6 polA_7 polA_8 polA_9 polA_10
[13:02:28] Fixed 2 duplicate /gene - cspD_1 cspD_2
[13:02:28] Fixed 5 duplicate /gene - bkdA2_1 bkdA2_2 bkdA2_3 bkdA2_4 bkdA2_5
[13:02:28] Fixed 3 duplicate /gene - fur_1 fur_2 fur_3
[13:02:28] Fixed 2 duplicate /gene - fdxA_1 fdxA_2
[13:02:28] Fixed 2 duplicate /gene - hisH_1 hisH_2
[13:02:28] Fixed 4 duplicate /gene - glmS_1 glmS_2 glmS_3 glmS_4
[13:02:28] Fixed 2 duplicate /gene - nhhA_1 nhhA_2
[13:02:28] Fixed 13 duplicate /gene - ilvC_1 ilvC_2 ilvC_3 ilvC_4 ilvC_5 ilvC_6 ilvC_7 ilvC_8 ilvC_9 ilvC_10 ilvC_11 ilvC_12 ilvC_13
[13:02:28] Fixed 13 duplicate /gene - rpoD_1 rpoD_2 rpoD_3 rpoD_4 rpoD_5 rpoD_6 rpoD_7 rpoD_8 rpoD_9 rpoD_10 rpoD_11 rpoD_12 rpoD_13
[13:02:28] Fixed 2 duplicate /gene - pncC_1 pncC_2
[13:02:28] Fixed 2 duplicate /gene - suyB_1 suyB_2
[13:02:28] Fixed 2 duplicate /gene - thiE_1 thiE_2
[13:02:28] Fixed 2 duplicate /gene - cpo_1 cpo_2
[13:02:28] Fixed 3 duplicate /gene - thrS_1 thrS_2 thrS_3
[13:02:28] Fixed 3 duplicate /gene - aceA_1 aceA_2 aceA_3
[13:02:28] Fixed 6 duplicate /gene - mscL_1 mscL_2 mscL_3 mscL_4 mscL_5 mscL_6
[13:02:28] Fixed 3 duplicate /gene - mdtC_1 mdtC_2 mdtC_3
[13:02:28] Fixed 3 duplicate /gene - nudC_1 nudC_2 nudC_3
[13:02:28] Fixed 7 duplicate /gene - livH_1 livH_2 livH_3 livH_4 livH_5 livH_6 livH_7
[13:02:28] Fixed 6 duplicate /gene - cdsA_1 cdsA_2 cdsA_3 cdsA_4 cdsA_5 cdsA_6
[13:02:28] Fixed 2 duplicate /gene - alx_1 alx_2
[13:02:28] Fixed 3 duplicate /gene - folE2_1 folE2_2 folE2_3
[13:02:28] Fixed 4 duplicate /gene - fixL_1 fixL_2 fixL_3 fixL_4
[13:02:28] Fixed 1133 colliding /gene names.
[13:02:28] Adding /locus_tag identifiers
[13:02:36] Assigned 34161 locus_tags to CDS and RNA features.
[13:02:36] Writing outputs to REGE2/

--------------------- WARNING ---------------------
MSG: Seq [locustag_73850]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_92450]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_108210]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_131560]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_135290]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_141840]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_156770]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_178820]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_180600]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_201600]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_203890]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_204420]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_204830]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_210760]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_213330]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_214840]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_226340]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_261170]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_265330]: Terminator codon inside CDS!
---------------------------------------------------

--------------------- WARNING ---------------------
MSG: Seq [locustag_322730]: Terminator codon inside CDS!
---------------------------------------------------
[13:05:08] Generating annotation statistics file
[13:05:11] Generating Genbank and Sequin files
[13:05:11] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.11 from http://www.vicbioinformatics.com' -Z REGE2\/prefix\.err -i REGE2\/prefix\.fsa 2> /dev/null
[09:18:43] Deleting unwanted file: REGE2/errorsummary.val
[09:18:43] Deleting unwanted file: REGE2/prefix.dr
[09:18:43] Deleting unwanted file: REGE2/prefix.fixedproducts
[09:18:43] Deleting unwanted file: REGE2/prefix.ecn
[09:18:43] Deleting unwanted file: REGE2/prefix.val
[09:18:43] Repairing broken .GBK output that tbl2asn produces...
[09:18:43] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < REGE2\/prefix\.gbf > REGE2\/prefix\.gbk
[09:18:52] Deleting unwanted file: REGE2/prefix.gbf
[09:18:52] Output files:
[09:18:52] REGE2/prefix.log
[09:18:52] REGE2/prefix.fna
[09:18:52] REGE2/prefix.gff
[09:18:52] REGE2/prefix.faa
[09:18:52] REGE2/prefix.ffn
[09:18:52] REGE2/prefix.tbl
[09:18:52] REGE2/prefix.fsa
[09:18:52] REGE2/prefix.txt
[09:18:52] REGE2/prefix.sqn
[09:18:52] REGE2/prefix.err
[09:18:52] REGE2/prefix.gbk
[09:18:52] Walltime used: 15019.32 minutes
[09:18:52] If you use this result please cite the Prokka paper:
[09:18:52] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
[09:18:52] Type 'prokka --citation' for more details.
[09:18:52] Share and enjoy!