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README

Sara Colom 2023-06-05

This repo contains the source function to generate one or two-way cross tab summary stats on the fly with var_summarise()

Installation

Make sure you have devtools, credentials and remotes already installed and loaded. Also be sure to be active on the UCSF VPN.

  • install.packages("devtools")
  • install.packages("credentials")
  • install.packages("remotes"
  • library(devtools)
  • library(credentials)
  • library(remotes)

Steps are commented out below beneath its description.

#set config
# usethis::use_git_config(user.name = "YourName", user.email = "your@mail.com")

#Go to github page to generate token
# usethis::create_github_token() 

#paste your PAT into pop-up that follows...
# credentials::set_github_pat()

#now remotes::install_github() will work
# remotes::install_github("ucsf-bhhi/SummaryTable")

Examples

This package was created to generate summary statics tables for one to two-cross tabs on the fly. You need to provide a data set with the variables you want to summarise.

Read in library

library(SummaryTable)
library(dplyr)
#> Warning: package 'dplyr' was built under R version 4.2.3
#> 
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#> 
#>     filter, lag
#> The following objects are masked from 'package:base':
#> 
#>     intersect, setdiff, setequal, union

Example

Data: iris

This is the output for Sepal.Width a continuous variable w/o stratification. Without any other sepcification, the function spits out the mean and SD.

#var_summarise(dat = iris, var = "Sepal.Width")