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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[tool.poetry]
name = "clinlp"
version = "0.9.0"
description = "Performant and production-ready NLP pipelines for clinical text written in Dutch"
authors = ["UMCU DIT Analytics <analytics@umcutrecht.nl>"]
readme = "README.md"
[tool.poetry.dependencies]
python = ">=3.10,<3.13"
spacy = "^3.5.3"
intervaltree = "^3.1.0"
transformers = {extras = ["torch"], version = "^4.30.2"}
makefun = "^1.15.1"
pandas = "^2.2.0"
pydantic = "^2.6.1"
numpy = "^1.26.4"
nervaluate = "^0.1.8"
scikit-learn = "^1.4.2"
[tool.poetry.extras]
transformers = ["transformers"]
metrics = ["nervaluate", "scikit-learn"]
[tool.poetry.group.dev.dependencies]
pytest = "^8.1.1"
pytest-cov = "^5.0.0"
ruff = "^0.4.1"
[tool.poetry.group.docs.dependencies]
sphinx = "^7.3.7"
myst-parser = "^3.0.1"
emoji = "^2.12.1"
toml = "^0.10.2"
furo = "^2024.5.6"
sphinx-new-tab-link = "^0.4.0"
[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "--cov=clinlp --cov-fail-under=85"
[tool.ruff]
src = ["src"]
[tool.ruff.lint]
select = [
"F", "E", "W", "C90", "I", "N", "D", "UP", "ANN", "S",
"BLE", "FBT", "B", "C4", "EM", "PIE", "T20",
"PT", "RSE", "RET", "SIM", "ARG", "PTH", "ERA",
"TRY", "PERF", "RUF"
]
ignore = [
"ANN002", "ANN003", "ANN101", "ANN102"
]
[tool.ruff.lint.per-file-ignores]
"docs/*" = ["D"]
"tests/*" = ["D", "S", "ANN"]
"scripts/*" = ["D", "T20"]
[tool.ruff.lint.pydocstyle]
convention = "numpy"