From 19ee33efef0edc039475f66585bc3dcf233993e6 Mon Sep 17 00:00:00 2001 From: Manuel Holtgrewe Date: Wed, 20 Nov 2024 09:18:41 +0100 Subject: [PATCH] fail early, fail often --- .github/workflows/build.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 991f4f1..d3866d7 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -51,6 +51,12 @@ jobs: sysctl kernel.apparmor_restrict_unprivileged_unconfined \ kernel.apparmor_restrict_unprivileged_userns \ kernel.unprivileged_userns_clone + imgdir=/github/workspace/mehari-data-tx-workflow/.snakemake/singularity + mkdir -p $imgdir + pushd $imgdir + singularity pull --name bc40b59cbb87acb3ff98d1dbdc12639e.simg docker://ghcr.io/varfish-org/mehari:pr-603 + popd + singularity exec --home '/github/workspace/mehari-data-tx-workflow' -B /github/workspace/snakemake_cache:/github/workspace/snakemake_cache:rw /github/workspace/mehari-data-tx-workflow/.snakemake/singularity/bc40b59cbb87acb3ff98d1dbdc12639e.simg bash -c 'set -euo pipefail; mehari --help' - name: Cache data directory id: cache-mehari-data-tx