diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index ec51749..991f4f1 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -51,7 +51,6 @@ jobs: sysctl kernel.apparmor_restrict_unprivileged_unconfined \ kernel.apparmor_restrict_unprivileged_userns \ kernel.unprivileged_userns_clone - apptainer run docker://ghcr.io/varfish-org/mehari:pr-603 - name: Cache data directory id: cache-mehari-data-tx @@ -79,7 +78,7 @@ jobs: mkdir -p /github/workspace/snakemake_cache mkdir -p ~/snakemake_cache mkdir -p ${{ github.workspace }}/snakemake_cache - args: "--configfile config/config.yaml --workflow-profile workflow/profiles/default --show-failed-logs --cores 4 --jobs 4 results/${{ matrix.genome_release }}-${{ matrix.source }}/mehari/seqrepo/report/mehari_db_check.txt" + args: "--verbose --configfile config/config.yaml --workflow-profile workflow/profiles/default --show-failed-logs --cores 4 --jobs 4 results/${{ matrix.genome_release }}-${{ matrix.source }}/mehari/seqrepo/report/mehari_db_check.txt" show-disk-usage-on-error: true - name: List files