vcfsample2info.md

% VCFSAMPLE2INFO(1) vcfsample2info (vcflib) | vcfsample2info (VCF transformation) % Erik Garrison and vcflib contributors

NAME

vcfsample2info

SYNOPSIS

vcfsample2info [options]

DESCRIPTION

Take annotations given in the per-sample fields and add the mean, median, min, or max to the site-level INFO.

OPTIONS

options:
    -f, --field         Add information about this field in samples to INFO column
    -i, --info          Store the computed statistic in this info field
    -a, --average       Take the mean of samples for field (default)
    -m, --median        Use the median
    -n, --min           Use the min
    -x, --max           Use the max

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfsample2info.cpp

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.