vcfcleancomplex.md

% VCFCLEANCOMPLEX(1) vcfcleancomplex (vcflib) | vcfcleancomplex (VCF transformation) % Erik Garrison and vcflib contributors

NAME

vcfcleancomplex

SYNOPSIS

vcfcleancomplex

DESCRIPTION

Removes reference-matching sequence from complex alleles and adjusts records to reflect positional change.

OPTIONS

Generate a VCF stream in which 'long' non-complexalleles have their position corrected.
assumes that VCF records can't overlap 5'->3'

Type: transformation

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfcleancomplex.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.