vcfgenosummarize.md

% VCFGENOSUMMARIZE(1) vcfgenosummarize (vcflib) | vcfgenosummarize (VCF statistics) % Erik Garrison and vcflib contributors

NAME

vcfgenosummarize

SYNOPSIS

vcfgenosummarize <[input file] >[output vcf]

DESCRIPTION

Adds summary statistics to each record summarizing qualities reported in called genotypes. Uses: RO (reference observation count), QR (quality sum reference observations) AO (alternate observation count), QA (quality sum alternate observations)

OPTIONS

Type: statistics

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfgenosummarize.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.