vcfinfosummarize.md

% VCFINFOSUMMARIZE(1) vcfinfosummarize (vcflib) | vcfinfosummarize (VCF transformation) % Erik Garrison and vcflib contributors

NAME

vcfinfosummarize

SYNOPSIS

vcfinfosummarize [options]

DESCRIPTION

Take annotations given in the per-sample fields and add the mean, median, min, or max to the site-level INFO.

OPTIONS

options:
    -f, --field         Summarize this field in the INFO column
    -i, --info          Store the computed statistic in this info field
    -a, --average       Take the mean for field (default)
    -m, --median        Use the median
    -n, --min           Use the min
    -x, --max           Use the max
    -h, --help          Print this message
    -v, --version       Print version

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfinfosummarize.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.