vcfroc.md

% VCFROC(1) vcfroc (vcflib) | vcfroc (VCF statistics) % Erik Garrison and vcflib contributors

NAME

vcfroc

SYNOPSIS

vcfroc [options] []

DESCRIPTION

Generates a pseudo-ROC curve using sensitivity and specificity estimated against a putative truth set. Thresholding is provided by successive QUAL cutoffs.

OPTIONS

options:
    -t, --truth-vcf FILE      use this VCF as ground truth for ROC generation
    -w, --window-size N       compare records up to this many bp away (default 30)
    -c, --complex             directly compare complex alleles, don't parse into primitives
    -r, --reference FILE      FASTA reference file

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfroc.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.