.gitmodules

[submodule "src/svtyper"]
	path = src/svtyper
	url = https://github.com/hall-lab/svtyper.git
[submodule "src/samblaster"]
	path = src/samblaster
	url = https://github.com/GregoryFaust/samblaster.git
[submodule "src/vawk"]
	path = src/vawk
	url = https://github.com/cc2qe/vawk.git
[submodule "src/tabix"]
	path = src/tabix
	url = https://github.com/samtools/tabix.git
[submodule "src/freebayes"]
	path = src/freebayes
	url = https://github.com/ekg/freebayes.git
[submodule "src/bwa"]
	path = src/bwa
	url = https://github.com/lh3/bwa.git
[submodule "src/bamkit"]
	path = src/bamkit
	url = https://github.com/cc2qe/bamkit.git
[submodule "src/parallel"]
	path = src/parallel
	url = http://git.savannah.gnu.org/r/parallel.git
[submodule "src/lumpy-sv"]
	path = src/lumpy-sv
	url = https://github.com/hall-lab/lumpy-sv.git
	branch = 0.2.13_cram_support
[submodule "src/CNVnator"]
	path = src/CNVnator
	url = https://github.com/abyzovlab/CNVnator