diff --git a/Documentation/Plugin_development.MRI.MRI_PIQTparser.rst b/Documentation/Plugin_development.MRI.MRI_PIQTparser.rst
new file mode 100644
index 0000000..82e7049
--- /dev/null
+++ b/Documentation/Plugin_development.MRI.MRI_PIQTparser.rst
@@ -0,0 +1,22 @@
+Plugin_development.MRI.MRI_PIQTparser package
+=============================================
+
+Submodules
+----------
+
+Plugin_development.MRI.MRI_PIQTparser.PIQTparser module
+-------------------------------------------------------
+
+.. automodule:: Plugin_development.MRI.MRI_PIQTparser.PIQTparser
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: Plugin_development.MRI.MRI_PIQTparser
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/Documentation/Plugins.Fluoro.PinCushion.rst b/Documentation/Plugins.Fluoro.PinCushion.rst
new file mode 100644
index 0000000..a02a356
--- /dev/null
+++ b/Documentation/Plugins.Fluoro.PinCushion.rst
@@ -0,0 +1,22 @@
+Plugins.Fluoro.PinCushion package
+=================================
+
+Submodules
+----------
+
+Plugins.Fluoro.PinCushion.pincushionWAD module
+----------------------------------------------
+
+.. automodule:: Plugins.Fluoro.PinCushion.pincushionWAD
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: Plugins.Fluoro.PinCushion
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/Documentation/Plugins.MG.Mammo_CDMam.rst b/Documentation/Plugins.MG.Mammo_CDMam.rst
new file mode 100644
index 0000000..1f6b641
--- /dev/null
+++ b/Documentation/Plugins.MG.Mammo_CDMam.rst
@@ -0,0 +1,38 @@
+Plugins.MG.Mammo_CDMam package
+==============================
+
+Submodules
+----------
+
+Plugins.MG.Mammo_CDMam.CDMam_constants module
+---------------------------------------------
+
+.. automodule:: Plugins.MG.Mammo_CDMam.CDMam_constants
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+Plugins.MG.Mammo_CDMam.CDMam_lib module
+---------------------------------------
+
+.. automodule:: Plugins.MG.Mammo_CDMam.CDMam_lib
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+Plugins.MG.Mammo_CDMam.CDMam_wadwrapper module
+----------------------------------------------
+
+.. automodule:: Plugins.MG.Mammo_CDMam.CDMam_wadwrapper
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: Plugins.MG.Mammo_CDMam
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/Documentation/Plugins.MG.Mammo_Flatfield.rst b/Documentation/Plugins.MG.Mammo_Flatfield.rst
new file mode 100644
index 0000000..8173769
--- /dev/null
+++ b/Documentation/Plugins.MG.Mammo_Flatfield.rst
@@ -0,0 +1,38 @@
+Plugins.MG.Mammo_Flatfield package
+==================================
+
+Submodules
+----------
+
+Plugins.MG.Mammo_Flatfield.QCMammo_constants module
+---------------------------------------------------
+
+.. automodule:: Plugins.MG.Mammo_Flatfield.QCMammo_constants
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+Plugins.MG.Mammo_Flatfield.QCMammo_lib module
+---------------------------------------------
+
+.. automodule:: Plugins.MG.Mammo_Flatfield.QCMammo_lib
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+Plugins.MG.Mammo_Flatfield.QCMammo_wadwrapper module
+----------------------------------------------------
+
+.. automodule:: Plugins.MG.Mammo_Flatfield.QCMammo_wadwrapper
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: Plugins.MG.Mammo_Flatfield
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/Documentation/Plugins.MG.rst b/Documentation/Plugins.MG.rst
new file mode 100644
index 0000000..de699d8
--- /dev/null
+++ b/Documentation/Plugins.MG.rst
@@ -0,0 +1,18 @@
+Plugins.MG package
+==================
+
+Subpackages
+-----------
+
+.. toctree::
+
+    Plugins.MG.Mammo_CDMam
+    Plugins.MG.Mammo_Flatfield
+
+Module contents
+---------------
+
+.. automodule:: Plugins.MG
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/Documentation/Tools.Input2DCM.rst b/Documentation/Tools.Input2DCM.rst
new file mode 100644
index 0000000..3917366
--- /dev/null
+++ b/Documentation/Tools.Input2DCM.rst
@@ -0,0 +1,22 @@
+Tools.Input2DCM package
+=======================
+
+Submodules
+----------
+
+Tools.Input2DCM.Input2DCM module
+--------------------------------
+
+.. automodule:: Tools.Input2DCM.Input2DCM
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: Tools.Input2DCM
+    :members:
+    :undoc-members:
+    :show-inheritance: