From ec87a427d97f2d02671ac41edcab0b0fd63178d0 Mon Sep 17 00:00:00 2001 From: Wouter De Coster Date: Mon, 6 May 2024 08:47:24 +0200 Subject: [PATCH] describe --arrow --- README.md | 11 ++++------- 1 file changed, 4 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 02cc4ac..407cdf4 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,6 @@ # NanoPlot Plotting tool for long read sequencing data and alignments. -[![Twitter URL](https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster)](https://twitter.com/wouter_decoster) -[![conda badge](https://anaconda.org/bioconda/nanoplot/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplot) -[![Build Status](https://travis-ci.org/wdecoster/NanoPlot.svg?branch=master)](https://travis-ci.org/wdecoster/NanoPlot) - ### NanoPlot is also available as a [web service](http://nanoplot.bioinf.be). ![Example plot](https://github.com/wdecoster/NanoPlot/blob/master/examples/scaled_Log_Downsampled_LengthvsQualityScatterPlot_kde.png) @@ -23,7 +19,8 @@ This script performs data extraction from Oxford Nanopore sequencing data in the (can be gzip, bz2, zip and xz compressed) - fasta files (can be bgzip, bzip2 or gzip compressed) -Multiple files of the same type can be offered simultaneously +- arrow files (as created by other tools I have developed) +Multiple files of the same type can be provided simultaneously ### INSTALLATION @@ -129,8 +126,8 @@ Input data sources, one of these is required.: --cram file [file ...] Data is in one or more sorted cram file(s). --pickle pickle Data is a pickle file stored earlier. - --feather file [file ...] - Data is in one or more feather file(s). + --feather/--arrow file [file ...] + Data is in one or more feather/arrow file(s). EXAMPLES: NanoPlot --summary sequencing_summary.txt --loglength -o summary-plots-log-transformed