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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(make_complex_heatmap)
export(plot_all_transcripts)
export(plot_colData_histogram)
export(plot_colData_on_embedding)
export(plot_feature_on_embedding)
export(plot_gene_coverage_by_var)
export(plot_marker_features)
export(plot_transcript_composition)
export(plot_violin)
export(plotly_settings)
import(SingleCellExperiment)
import(SummarizedExperiment)
import(chevreulProcess)
import(dplyr)
import(ggplot2)
import(stringr)
import(tidyr)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,draw)
importFrom(EnsDb.Hsapiens.v86,EnsDb.Hsapiens.v86)
importFrom(EnsDb.Mmusculus.v79,EnsDb.Mmusculus.v79)
importFrom(S4Vectors,metadata)
importFrom(chevreuldata,human_gene_transcript_sce)
importFrom(circlize,colorRamp2)
importFrom(cluster,agnes)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,coalesce)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,one_of)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,top_n)
importFrom(forcats,fct_na_value_to_level)
importFrom(fs,dir_ls)
importFrom(fs,path)
importFrom(fs,path_abs)
importFrom(fs,path_dir)
importFrom(fs,path_expand)
importFrom(fs,path_ext_remove)
importFrom(fs,path_ext_set)
importFrom(fs,path_file)
importFrom(glue,glue)
importFrom(grid,unit)
importFrom(patchwork,wrap_plots)
importFrom(plotly,config)
importFrom(plotly,event_data)
importFrom(plotly,ggplotly)
importFrom(plotly,highlight)
importFrom(plotly,layout)
importFrom(plotly,partial_bundle)
importFrom(plotly,style)
importFrom(plotly,toWebGL)
importFrom(purrr,flatten_chr)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(purrr,map_if)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap)
importFrom(purrr,reduce)
importFrom(purrr,set_names)
importFrom(scales,hue_pal)
importFrom(scales,pseudo_log_trans)
importFrom(scales,rescale)
importFrom(scater,plotDots)
importFrom(scater,plotExpression)
importFrom(scater,plotReducedDim)
importFrom(scran,getTopHVGs)
importFrom(stats,as.dendrogram)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,reorder)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stringr,str_detect)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_subset)
importFrom(stringr,str_to_title)
importFrom(tibble,column_to_rownames)
importFrom(tibble,deframe)
importFrom(tibble,enframe)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,drop_na)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,unite)
importFrom(utils,capture.output)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,sessionInfo)
importFrom(wiggleplotr,plotCoverageFromEnsembldb)