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viewAllCNVByGenes.blade.php
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viewAllCNVByGenes.blade.php
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@php
include resource_path() . '/views/system/config.blade.php';
$organism = $info['organism'];
$cnv_data_option = $info['cnv_data_option'];
$gene_result_arr = $info['gene_result_arr'];
$cnv_result_arr = $info['cnv_result_arr'];
@endphp
<head>
<title>{{ $config_organism }}-KB</title>
<link rel="shortcut icon" href="{{ asset('css/images/Header/kbcommons_icon.ico') }}">
<script src="https://code.jquery.com/jquery-3.6.0.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script>
</head>
<body>
<!-- Back button -->
<a href="{{ route('system.tools.GenVarX', ['organism'=>$organism]) }}"><button> < Back </button></a>
<br />
<br />
<h3><b>Queried genes:</b></h3>
@php
if (isset($gene_result_arr) && is_array($gene_result_arr) && !empty($gene_result_arr) && !is_null($gene_result_arr)) {
echo "<div style=\"width:auto; height:auto; border:3px solid #000; max-height:1000px; overflow:scroll;\">";
echo "<table style=\"text-align:center; width:100%;\">";
// Table header
echo "<tr>";
foreach ($gene_result_arr[0] as $key => $value) {
echo "<th style=\"border:1px solid black; text-align:center; min-width:80px;\">" . $key . "</th>";
}
echo "</tr>";
// Table row
for ($i = 0; $i < count($gene_result_arr); $i++) {
// Table row
echo "<tr bgcolor=\"" . ($i % 2 ? "#FFFFFF" : "#DDFDD") . "\">";
foreach ($gene_result_arr[$i] as $key => $value) {
echo "<td style=\"border:1px solid black; min-width:80px;\">" . $value . "</td>";
}
echo "</tr>";
}
echo "</table>";
echo "</div>";
} else {
echo "<p>Queried genes not found!!!</p>";
}
@endphp
<br /><br />
<h3><b>CNV regions and accession counts in different CNs:</b></h3>
@php
if (isset($cnv_result_arr) && is_array($cnv_result_arr) && !empty($cnv_result_arr) && !is_null($cnv_result_arr)) {
echo "<div style=\"width:auto; height:auto; border:3px solid #000; max-height:1000px; overflow:scroll;\">";
echo "<table style=\"text-align:center; width:100%;\">";
// Table header
echo "<tr>";
foreach ($cnv_result_arr[0] as $key => $value) {
if ($key != "Neighbouring_Genes") {
echo "<th style=\"border:1px solid black; text-align:center; min-width:80px;\">" . $key . "</th>";
}
}
echo "</tr>";
// Table row
for ($i = 0; $i < count($cnv_result_arr); $i++) {
// Table row
echo "<tr bgcolor=\"" . ($i % 2 ? "#FFFFFF" : "#DDFDD") . "\">";
foreach ($cnv_result_arr[$i] as $key => $value) {
if ($key != "Neighbouring_Genes") {
echo "<td style=\"border:1px solid black; min-width:80px;\">" . $value . "</td>";
}
}
echo "<td>";
echo "<a href=\"" . route('system.tools.GenVarX.viewCNVAndImprovementStatus', ['organism'=>$organism, 'Chromosome'=>$cnv_result_arr[$i]->Chromosome, 'Position_Start'=>$cnv_result_arr[$i]->Start, 'Position_End'=>$cnv_result_arr[$i]->End, 'CNV_Data_Option'=>$cnv_data_option]) . "\" target=\"_blank\">";
echo "<button>View Details</button>";
echo "</a>";
echo "</td>";
echo "<td>";
echo "<a href=\"" . route('system.tools.GenVarX.viewCNVAndPhenotype', ['organism'=>$organism, 'Chromosome'=>$cnv_result_arr[$i]->Chromosome, 'Position_Start'=>$cnv_result_arr[$i]->Start, 'Position_End'=>$cnv_result_arr[$i]->End, 'CNV_Data_Option'=>$cnv_data_option]) . "\" target=\"_blank\">";
echo "<button>Connect Phenotypes</button>";
echo "</a>";
echo "</td>";
echo "</tr>";
}
echo "</table>";
echo "</div>";
} else {
echo "<p>No CNV region found!!!</p>";
}
@endphp
<br /><br />
<h3><b>Neighbouring genes in different CNV regions:</b></h3>
@php
if (isset($cnv_result_arr) && is_array($cnv_result_arr) && !empty($cnv_result_arr) && !is_null($cnv_result_arr)) {
for ($i = 0; $i < count($cnv_result_arr); $i++) {
echo "<div style=\"width:auto; height:auto; border:3px solid #000; max-height:1000px; overflow:scroll;\">";
echo "<table style=\"text-align:center; width:100%;\">";
// Table header
echo "<tr>";
foreach ($cnv_result_arr[$i]->Neighbouring_Genes[0] as $key => $value) {
echo "<th style=\"border:1px solid black; text-align:center; min-width:80px;\">" . $key . "</th>";
}
echo "</tr>";
// Table row
for ($j = 0; $j < count($cnv_result_arr[$i]->Neighbouring_Genes); $j++) {
// Table row
echo "<tr bgcolor=\"" . ($j % 2 ? "#FFFFFF" : "#DDFDD") . "\">";
foreach ($cnv_result_arr[$i]->Neighbouring_Genes[$j] as $key => $value) {
echo "<td style=\"border:1px solid black; min-width:80px;\">" . $value . "</td>";
}
echo "</tr>";
}
echo "</table>";
echo "</div>";
echo "<br /><br />";
}
} else {
echo "<p>No neighbouring gene found!!!</p>";
}
@endphp
</body>
<script type="text/javascript">
</script>