diff --git a/vignettes/seismicGWAS.Rmd b/vignettes/seismicGWAS.Rmd index a230b5f..ba107e6 100644 --- a/vignettes/seismicGWAS.Rmd +++ b/vignettes/seismicGWAS.Rmd @@ -119,7 +119,12 @@ Next, to aid in result interpretation we make use of the `biomaRt` package to convert entrez ids to gene symbols. ```{r message=FALSE} # convert ids to symbols using biomaRt -library(biomaRt) +if (!require(biomaRt)){ + if (!require(BiocManager, quietly = TRUE)) + install.packages("BiocManager") + BiocManager::install("biomaRt") + library(biomaRt) +} ensembl <- useMart("ensembl", dataset = "hsapiens_gene_ensembl") hsa.map <- getBM(attributes = c('entrezgene_id', 'hgnc_symbol'),