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[DocDB] Tserver process rpc_tp_TabletSe crashes in rocksdb::Block::NewIterator() #13109

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sonalsagarwal opened this issue Jun 30, 2022 · 3 comments
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[DocDB] Tserver process rpc_tp_TabletSe crashes in rocksdb::Block::NewIterator() #13109

sonalsagarwal opened this issue Jun 30, 2022 · 3 comments
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@ttyusupov
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area/docdb YugabyteDB core features kind/bug This issue is a bug priority/high High Priority

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@sonalsagarwal
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sonalsagarwal commented Jun 30, 2022 •
edited by yugabyte-ci
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Jira Link: DB-2817

Description

YB version: 2.15.1.0-b91
Test run : TPCC 2700 WH load phase
3 node RF3 single zone

The tserver process was restarted when the rcp_tp_TabletSe process crashed.

From tserver err log :

*** Aborted at 1656537840 (unix time) try "date -d @1656537840" if you are using GNU date ***
PC: @                0x0 (unknown)
*** SIGSEGV (@0x0) received by PID 19961 (TID 0x7f91a6d40700) from PID 0; stack trace: ***
    @          0x3364449 rocksdb::Block::NewIterator()
    @          0x3387a79 rocksdb::BlockBasedTable::NewDataBlockIterator()
    @          0x33af087 rocksdb::(anonymous namespace)::TwoLevelIterator::InitDataBlock()
    @          0x33ae9d4 rocksdb::(anonymous namespace)::TwoLevelIterator::Seek()
    @          0x339bbf3 rocksdb::MergingIterator::Seek()
    @          0x32ffc5c rocksdb::DBIter::Seek()
    @          0x2fb33c2 yb::docdb::IntentsWriter::Apply()
    @          0x3351d37 rocksdb::WriteBatch::Iterate()
    @          0x33565b1 rocksdb::WriteBatchInternal::InsertInto()
    @          0x32ca1f2 rocksdb::DBImpl::WriteImpl()
    @          0x32bb5c1 rocksdb::DBImpl::Write()
    @          0x356c425 yb::tablet::Tablet::WriteToRocksDB()
    @          0x3568b18 yb::tablet::Tablet::ApplyIntents()
    @          0x3569722 yb::tablet::Tablet::ApplyIntents()
    @          0x360c612 yb::tablet::TransactionParticipant::Impl::ProcessReplicated()
    @          0x354f9c3 yb::tablet::UpdateTxnOperation::DoReplicated()
    @          0x35450af yb::tablet::Operation::Replicated()
    @          0x35463d5 yb::tablet::OperationDriver::ReplicationFinished()
    @          0x2e29175 yb::consensus::ConsensusRound::NotifyReplicationFinished()
    @          0x2e75a45 yb::consensus::ReplicaState::ApplyPendingOperationsUnlocked()
    @          0x2e74d6d yb::consensus::ReplicaState::AdvanceCommittedOpIdUnlocked()
    @          0x2e5ef8f yb::consensus::RaftConsensus::UpdateReplica()
    @          0x2e44c4f yb::consensus::RaftConsensus::Update()
    @          0x374c045 yb::tserver::ConsensusServiceImpl::UpdateConsensus()
    @          0x2eabdf2 std::__1::__function::__func<>::operator()()
    @          0x2eaca66 yb::consensus::ConsensusServiceIf::Handle()
    @          0x34c0c9f yb::rpc::ServicePoolImpl::Handle()
    @          0x34126e5 yb::rpc::InboundCall::InboundCallTask::Run()
    @          0x34cfbbd yb::rpc::(anonymous namespace)::Worker::Execute()
    @          0x3a96514 yb::Thread::SuperviseThread()
    @     0x7f94af9c1694 start_thread
    @     0x7f94afec341d __clone

Stack from Core dump :

warning: File "/home/yugabyte/yb-software/yugabyte-2.15.1.0-b91-centos-x86_64/linuxbrew/lib/libthread_db.so.1" auto-loading has been declined by your `auto-load safe-path' set to "$debugdir:$datadir/auto-load:/usr/bin/mono-gdb.py".
To enable execution of this file add
	add-auto-load-safe-path /home/yugabyte/yb-software/yugabyte-2.15.1.0-b91-centos-x86_64/linuxbrew/lib/libthread_db.so.1
line to your configuration file "/root/.gdbinit".
To completely disable this security protection add
	set auto-load safe-path /
line to your configuration file "/root/.gdbinit".
For more information about this security protection see the
"Auto-loading safe path" section in the GDB manual.  E.g., run from the shell:
	info "(gdb)Auto-loading safe path"

warning: Unable to find libthread_db matching inferior's thread library, thread debugging will not be available.

warning: File "/home/yugabyte/yb-software/yugabyte-2.15.1.0-b91-centos-x86_64/linuxbrew/lib/libthread_db.so.1" auto-loading has been declined by your `auto-load safe-path' set to "$debugdir:$datadir/auto-load:/usr/bin/mono-gdb.py".

warning: Unable to find libthread_db matching inferior's thread library, thread debugging will not be available.
Core was generated by `/home/yugabyte/tserver/bin/yb-tserver --flagfile /home/yugabyte/tserver/conf/se'.
Program terminated with signal 11, Segmentation fault.
Dwarf Error: Cannot find DIE at 0xd5fb referenced from DIE at 0x1f3e92 [in module /home/yugabyte/yb-software/yugabyte-2.15.1.0-b91-centos-x86_64/bin/yb-tserver]
#-1 DecodeFixed32 (ptr=<optimized out>) at ../../src/yb/rocksdb/util/coding.h:110
110	../../src/yb/rocksdb/util/coding.h: No such file or directory.
(gdb) bt
#-1 DecodeFixed32 (ptr=<optimized out>) at ../../src/yb/rocksdb/util/coding.h:110
#0  DecodeFixed32 (ptr=<optimized out>) at ../../src/yb/rocksdb/util/coding.h:110
#1  NumRestarts (this=0x44cd08390) at ../../src/yb/rocksdb/table/block.cc:512
#2  rocksdb::Block::NewIterator(rocksdb::Comparator const*, rocksdb::KeyValueEncodingFormat, rocksdb::BlockIter*, bool) const (this=0x44cd08390, cmp=0xbf6fa98, key_value_encoding_format=1, iter=0x0, total_order_seek=true)
    at ../../src/yb/rocksdb/table/block.cc:543
#3  0x0000000003387a79 in rocksdb::BlockBasedTable::NewDataBlockIterator(rocksdb::ReadOptions const&, yb::Slice const&, rocksdb::BlockType, rocksdb::BlockIter*) (this=0x2999780d0, ro=..., index_value=..., block_type=kData, input_iter=0x0)
    at ../../src/yb/rocksdb/table/block_based_table_reader.cc:1260
#4  0x00000000033af087 in rocksdb::(anonymous namespace)::TwoLevelIterator::InitDataBlock() (this=0x3047dee8) at ../../src/yb/rocksdb/table/two_level_iterator.cc:207
#5  0x00000000033ae9d4 in rocksdb::(anonymous namespace)::TwoLevelIterator::Seek(yb::Slice const&) (this=0x3047dee8, target=...) at ../../src/yb/rocksdb/table/two_level_iterator.cc:117
#6  0x000000000339bbf3 in Seek (this=0x3047dd20, k=...) at ../../src/yb/rocksdb/table/iterator_wrapper.h:126
#7  rocksdb::MergingIterator::Seek(yb::Slice const&) (this=0x3047dca0, target=...) at ../../src/yb/rocksdb/table/merger.cc:154
#8  0x00000000032ffc5c in rocksdb::DBIter::Seek(yb::Slice const&) (this=0x3047db38, target=...) at ../../src/yb/rocksdb/db/db_iter.cc:759
#9  0x0000000002fb33c2 in yb::docdb::IntentsWriter::Apply(rocksdb::DirectWriteHandler*) (this=0x7f91a6d36fc0, handler=0x7f91a6d36518) at ../../src/yb/docdb/rocksdb_writer.cc:386
#10 0x0000000003351d37 in DirectInsert (handler=0x7f91a6d36a28, writer=0x7f91a6d36fc0) at ../../src/yb/rocksdb/db/write_batch.cc:983
#11 rocksdb::WriteBatch::Iterate(rocksdb::WriteBatch::Handler*) const (this=<optimized out>, handler=0x7f91a6d36a28) at ../../src/yb/rocksdb/db/write_batch.cc:341
#12 0x00000000033565b1 in rocksdb::WriteBatchInternal::InsertInto(rocksdb::autovector<rocksdb::WriteThread::Writer*, 8ul> const&, unsigned long, rocksdb::ColumnFamilyMemTables*, rocksdb::FlushScheduler*, bool, unsigned long, rocksdb::DB*, yb::EnumBitSet<rocksdb::InsertFlag>) (writers=..., sequence=<optimized out>, memtables=<optimized out>, flush_scheduler=<optimized out>, ignore_missing_column_families=<optimized out>, log_number=0, db=0x6ee1c000, insert_flags=...)
    at ../../src/yb/rocksdb/db/write_batch.cc:927
#13 0x00000000032ca1f2 in rocksdb::DBImpl::WriteImpl(rocksdb::WriteOptions const&, rocksdb::WriteBatch*, rocksdb::WriteCallback*) (this=<optimized out>, write_options=..., my_batch=<optimized out>, callback=<optimized out>)
    at ../../src/yb/rocksdb/db/db_impl.cc:5291
#14 0x00000000032bb5c1 in rocksdb::DBImpl::Write(rocksdb::WriteOptions const&, rocksdb::WriteBatch*) (this=0xbf6fa98, write_options=..., my_batch=0x0) at ../../src/yb/rocksdb/db/db_impl.cc:4924
#15 0x000000000356c425 in yb::tablet::Tablet::WriteToRocksDB(rocksdb::UserFrontiers const*, rocksdb::WriteBatch*, yb::docdb::StorageDbType) (this=0x3469d0020, frontiers=<optimized out>, write_batch=0x7f91a6d37088, storage_db_type=0)
    at ../../src/yb/tablet/tablet.cc:1335
#16 0x0000000003568b18 in yb::tablet::Tablet::ApplyIntents(yb::tablet::TransactionApplyData const&) (this=0x3469d0020, data=...) at ../../src/yb/tablet/tablet.cc:1776
#17 0x0000000003569722 in non-virtual thunk to yb::tablet::Tablet::ApplyIntents(yb::tablet::TransactionApplyData const&) () at ../../src/yb/util/status.cc:632
#18 0x000000000360c612 in ProcessApply (this=0x25bb0700, data=...) at ../../src/yb/tablet/transaction_participant.cc:561
#19 ReplicatedApplying (this=<optimized out>, id=..., data=...) at ../../src/yb/tablet/transaction_participant.cc:1420
#20 yb::tablet::TransactionParticipant::Impl::ProcessReplicated(yb::tablet::TransactionParticipant::ReplicatedData const&) (this=<optimized out>, data=...) at ../../src/yb/tablet/transaction_participant.cc:492
#21 0x000000000354f9c3 in ProcessReplicated (this=0x2ee058ba0, data=...) at ../../src/yb/tablet/transaction_participant.cc:1695
#22 yb::tablet::UpdateTxnOperation::DoReplicated(long, yb::Status*) (this=0x931c8c0, leader_term=<optimized out>, complete_status=<optimized out>) at ../../src/yb/tablet/operations/update_txn_operation.cc:65
#23 0x00000000035450af in yb::tablet::Operation::Replicated(long, yb::StronglyTypedBool<yb::tablet::WasPending_Tag>) (this=0x931c8c0, leader_term=1, was_pending=...) at ../../src/yb/tablet/operations/operation.cc:70
#24 0x00000000035463d5 in ApplyTask (this=0x241f4c480, leader_term=-1, applied_op_ids=0x7f91a6d377c0) at ../../src/yb/tablet/operations/operation_driver.cc:395
#25 yb::tablet::OperationDriver::ReplicationFinished(yb::Status const&, long, std::__1::vector<yb::OpId, std::__1::allocator<yb::OpId> >*) (this=<optimized out>, status=..., leader_term=1, applied_op_ids=0x7f91a6d377c0)
    at ../../src/yb/tablet/operations/operation_driver.cc:353
#26 0x0000000002e29175 in yb::consensus::ConsensusRound::NotifyReplicationFinished(yb::Status const&, long, std::__1::vector<yb::OpId, std::__1::allocator<yb::OpId> >*) (this=0xc0010780, status=..., leader_term=-1, applied_op_ids=0x7f91a6d377c0)
    at ../../src/yb/consensus/consensus_round.cc:47
#27 0x0000000002e75a45 in NotifyReplicationFinishedUnlocked (this=0x171ae700, round=..., status=..., leader_term=-1, applied_op_ids=0x7f91a6d377c0) at ../../src/yb/consensus/replica_state.cc:1378
#28 yb::consensus::ReplicaState::ApplyPendingOperationsUnlocked(yb::OpId const&, yb::StronglyTypedBool<yb::consensus::CouldStop_Tag>) (this=0x171ae700, committed_op_id=..., could_stop=...) at ../../src/yb/consensus/replica_state.cc:956
#29 0x0000000002e74d6d in yb::consensus::ReplicaState::AdvanceCommittedOpIdUnlocked(yb::OpId const&, yb::StronglyTypedBool<yb::consensus::CouldStop_Tag>) (this=0x171ae700, committed_op_id=..., could_stop=...)
    at ../../src/yb/consensus/replica_state.cc:869
#30 0x0000000002e5ef8f in EarlyCommitUnlocked (this=0x1084cfb98, request=..., deduped_req=...) at ../../src/yb/consensus/raft_consensus.cc:2033
#31 yb::consensus::RaftConsensus::UpdateReplica(yb::consensus::ConsensusRequestPB*, yb::consensus::ConsensusResponsePB*) (this=<optimized out>, request=0x377113e20, response=0x377113ea0) at ../../src/yb/consensus/raft_consensus.cc:1967
#32 0x0000000002e44c4f in yb::consensus::RaftConsensus::Update(yb::consensus::ConsensusRequestPB*, yb::consensus::ConsensusResponsePB*, std::__1::chrono::time_point<yb::CoarseMonoClock, std::__1::chrono::duration<long long, std::__1::ratio<1l, 1000000000l> > >) (this=0x1084cfb98, request=0x377113e20, response=0x377113ea0, deadline=...) at ../../src/yb/consensus/raft_consensus.cc:1530
#33 0x000000000374c045 in yb::tserver::ConsensusServiceImpl::UpdateConsensus(yb::consensus::ConsensusRequestPB const*, yb::consensus::ConsensusResponsePB*, yb::rpc::RpcContext) (this=<optimized out>, req=0x377113e20, resp=0x377113ea0, context=...)
    at ../../src/yb/tserver/tablet_service.cc:1867
#34 0x0000000002eabdf2 in operator() (this=<optimized out>, req=0x377113e20, resp=0x377113ea0, rpc_context=...) at src/yb/consensus/consensus.service.cc:288
#35 HandleCall<yb::rpc::RpcCallPBParamsImpl<yb::consensus::ConsensusRequestPB, yb::consensus::ConsensusResponsePB>, (lambda at src/yb/consensus/consensus.service.cc:287:28)> (call=..., f=...) at ../../src/yb/rpc/local_call.h:124
#36 operator() (this=<optimized out>, call=...) at src/yb/consensus/consensus.service.cc:286
#37 __invoke<(lambda at src/yb/consensus/consensus.service.cc:284:16) &, std::shared_ptr<yb::rpc::InboundCall> > (__f=..., __args=<optimized out>)
    at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/type_traits:3694
#38 __call<(lambda at src/yb/consensus/consensus.service.cc:284:16) &, std::shared_ptr<yb::rpc::InboundCall> > (__args=<optimized out>, __args=<optimized out>)
    at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/__functional_base:348
#39 operator() (this=<optimized out>, __arg=<optimized out>) at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/functional:1558
#40 std::__1::__function::__func<yb::consensus::ConsensusServiceIf::InitMethods(scoped_refptr<yb::MetricEntity> const&)::$_0, std::__1::allocator<yb::consensus::ConsensusServiceIf::InitMethods(scoped_refptr<yb::MetricEntity> const&)::$_0>, void (std::__1::shared_ptr<yb::rpc::InboundCall>)>::operator()(std::__1::shared_ptr<yb::rpc::InboundCall>&&) (this=<optimized out>, __arg=<optimized out>)
    at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/functional:1732
#41 0x0000000002eaca66 in operator() (this=<optimized out>, __args=<unknown type in /home/yugabyte/yb-software/yugabyte-2.15.1.0-b91-centos-x86_64/bin/yb-tserver, CU 0x15649dc, DIE 0x15b547f>)
    at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/functional:1885
#42 operator() (this=<optimized out>, __arg=...) at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/functional:2560
#43 yb::consensus::ConsensusServiceIf::Handle(std::__1::shared_ptr<yb::rpc::InboundCall>) (this=<optimized out>, call=...) at src/yb/consensus/consensus.service.cc:271
#44 0x00000000034c0c9f in yb::rpc::ServicePoolImpl::Handle(std::__1::shared_ptr<yb::rpc::InboundCall>) (this=0x6bdd680, incoming=...) at ../../src/yb/rpc/service_pool.cc:270
#45 0x00000000034126e5 in yb::rpc::InboundCall::InboundCallTask::Run() (this=<optimized out>) at ../../src/yb/rpc/inbound_call.cc:237
#46 0x00000000034cfbbd in yb::rpc::(anonymous namespace)::Worker::Execute() (this=<optimized out>) at ../../src/yb/rpc/thread_pool.cc:104
#47 0x0000000003a96514 in operator() (this=0xbb4c4170) at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/functional:1885
#48 operator() (this=0xbb4c4170) at /opt/yb-build/thirdparty/yugabyte-db-thirdparty-v20220531054925-62ed7bc00f-almalinux8-x86_64-clang12-linuxbrew-full-lto/installed/uninstrumented/libcxx/include/c++/v1/functional:2560
#49 yb::Thread::SuperviseThread(void*) (arg=0xbb4c4120) at ../../src/yb/util/thread.cc:774
#50 0x00007f94af9c1694 in start_thread (arg=0x7f91a6d40700) at pthread_create.c:333
#51 0x00007f94afec341d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:109
@sonalsagarwal sonalsagarwal added area/docdb YugabyteDB core features status/awaiting-triage Issue awaiting triage labels Jun 30, 2022
@yugabyte-ci yugabyte-ci added kind/bug This issue is a bug priority/medium Medium priority issue labels Jun 30, 2022
@sonalsagarwal
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Universe Link : http://10.9.131.126/universes/9567c618-f6f3-4399-b24d-b0d18293f0df

@sonalsagarwal
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Similar to issue : #12681

@sonalsagarwal sonalsagarwal mentioned this issue Jun 30, 2022
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@yugabyte-ci yugabyte-ci removed the status/awaiting-triage Issue awaiting triage label Jul 5, 2022
@yugabyte-ci yugabyte-ci added priority/critical Critical issue and removed priority/medium Medium priority issue labels Jul 20, 2022
@yugabyte-ci yugabyte-ci assigned ttyusupov and unassigned rthallamko3 Jul 29, 2022
@yugabyte-ci yugabyte-ci added priority/high High Priority and removed priority/critical Critical issue labels Feb 22, 2023
This was referenced Jun 22, 2023
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@arybochkin arybochkin mentioned this issue Jan 30, 2024
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@rthallamko3
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closing this as DUP of #20852

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