Pure python implementation for analyzing Phy style in vivo electrophysiology data. Currently designed for Intan stimulus data
but with plans to expand to other recording systems (using Neo for reading ephys data, so just need wrapper to expand). There
are classes for preparing stimulus data as well as the spike data. Then spiketrain analysis or analog based stimulus analysis can
occur. Finally plotting classes allow for easy plotting of the data.
Really just for my labmates, but if you find something useful or a mistake let me know :)
Currently there is no pypi or conda-forge package. So installation should be from repo. For automatic install with conda
copy:
environment.yml
Then cd to folder containing the yaml and in terminal or Anaconda Prompt type
conda env create -f environment.yml
conda activate spikeanalysis_envThis does not install in editable mode. For editable mode modify the downloaded .yml by removing the pip install of spikeanalysis
and instead do git clone and run pip install -e . from the folder.